mRNA_H-paniculata_contig30550.8277.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30550.8277.1
Unique NamemRNA_H-paniculata_contig30550.8277.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig30550.8277.1 vs. uniprot
Match: A0A485L7G2_9STRA (Aste57867_16617 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L7G2_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 8.350e-8
Identity = 31/82 (37.80%), Postives = 45/82 (54.88%), Query Frame = 1 
Query:    1 WICDSGATGHATPSAANMSSYRQVKETLRIASGQVIPIVGRGHLSMTFRTSNGNVPLSVL--NVA-----HAPELHYNLFSL 225
            WI DSGAT   TP+    S Y   K++LR+A G+++ ++G G L + F  S  + P  V   NV      H P+L +NL S+
Sbjct:  365 WIIDSGATASTTPTRTFFSKYVPCKQSLRVADGKMLAVIGYGELCLRFNLSEPDPPAQVRKGNVLFTFGLHCPDLKFNLLSV 446
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BLAST of mRNA_H-paniculata_contig30550.8277.1 vs. uniprot
Match: H3H469_PHYRM (Retrotran_gag_3 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H469_PHYRM)

HSP 1 Score: 50.4 bits (119), Expect = 3.180e-5
Identity = 28/86 (32.56%), Postives = 47/86 (54.65%), Query Frame = 1 
Query:    1 WICDSGATGHATPSAANMSSYRQV-KETLRIASGQVIPIVGRGHLSMTFRTSNGNVPL-SVLNVAHAPELHYNLFSLRKVADAGNK 252
            W  DSG T + T S       + +  +T+ +     IPI+G+G ++MT   + G+  + S+ +V +APEL +NL S+R+  D   K
Sbjct:  381 WTIDSGCTRYVTSSPHWFEDLKPIIGKTITVGGNHQIPILGKGTVNMTVTDTKGSKRIISLSDVLYAPELKFNLLSVRQAVDGDYK 466
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30550.8277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A485L7G2_9STRA8.350e-837.80Aste57867_16617 protein n=1 Tax=Aphanomyces stella... [more]
H3H469_PHYRM3.180e-532.56Retrotran_gag_3 domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30550contigH-paniculata_contig30550:1740..1997 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score66.6
Seed ortholog evalue6.4e-09
Seed eggNOG ortholog161934.XP_010672823.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs37Z1Z@33090,3GN55@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929938.6368315-CDS-H-paniculata_contig30550:1739..19971622929938.6368315-CDS-H-paniculata_contig30550:1739..1997Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30550 1740..1997 +
1691481078.2243063-CDS-H-paniculata_contig30550:1739..19971691481078.2243063-CDS-H-paniculata_contig30550:1739..1997Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30550 1740..1997 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30550.8277.1prot_H-paniculata_contig30550.8277.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30550 1740..1997 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30550.8277.1

>prot_H-paniculata_contig30550.8277.1 ID=prot_H-paniculata_contig30550.8277.1|Name=mRNA_H-paniculata_contig30550.8277.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=86bp
WICDSGATGHATPSAANMSSYRQVKETLRIASGQVIPIVGRGHLSMTFRT
SNGNVPLSVLNVAHAPELHYNLFSLRKVADAGNKDV
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mRNA from alignment at H-paniculata_contig30550:1740..1997+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30550.8277.1 ID=mRNA_H-paniculata_contig30550.8277.1|Name=mRNA_H-paniculata_contig30550.8277.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=258bp|location=Sequence derived from alignment at H-paniculata_contig30550:1740..1997+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGATTTGTGATAGTGGGGCCACAGGTCATGCAACACCATCTGCGGCTAA
CATGTCTAGCTATCGGCAAGTCAAAGAGACGCTGCGGATTGCATCAGGAC
AAGTGATCCCGATTGTTGGTCGGGGACACCTGAGCATGACATTTAGGACG
AGTAATGGAAATGTGCCTCTCTCGGTTCTGAATGTCGCACATGCCCCTGA
ACTCCACTACAATTTATTTTCGCTGAGGAAAGTGGCCGATGCCGGTAATA
AAGATGTT
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Coding sequence (CDS) from alignment at H-paniculata_contig30550:1740..1997+

>mRNA_H-paniculata_contig30550.8277.1 ID=mRNA_H-paniculata_contig30550.8277.1|Name=mRNA_H-paniculata_contig30550.8277.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at H-paniculata_contig30550:1740..1997+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGATTTGTGATAGTGGGGCCACAGGTCATGCAACACCATCTGCGGCTAA
CATGTCTAGCTATCGGCAAGTCAAAGAGACGCTGCGGATTGCATCAGGAC
AAGTGATCCCGATTGTTGGTCGGGGACACCTGAGCATGACATTTAGGACG
AGTAATGGAAATGTGCCTCTCTCGGTTCTGAATGTCGCACATGCCCCTGA
ACTCCACTACAATTTATTTTCGCTGAGGAAAGTGGCCGATGCCGGTAATA
AAGATGTTTGGATTTGTGATAGTGGGGCCACAGGTCATGCAACACCATCT
GCGGCTAACATGTCTAGCTATCGGCAAGTCAAAGAGACGCTGCGGATTGC
ATCAGGACAAGTGATCCCGATTGTTGGTCGGGGACACCTGAGCATGACAT
TTAGGACGAGTAATGGAAATGTGCCTCTCTCGGTTCTGAATGTCGCACAT
GCCCCTGAACTCCACTACAATTTATTTTCGCTGAGGAAAGTGGCCGATGC
CGGTAATAAAGATGTT
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