mRNA_H-paniculata_contig3054.8273.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3054.8273.1 vs. uniprot
Match: A0A6H5JNE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNE6_9PHAE) HSP 1 Score: 324 bits (831), Expect = 1.330e-101 Identity = 177/271 (65.31%), Postives = 210/271 (77.49%), Query Frame = 2
Query: 461 GRAEALRRFAEGRAMKTGTTIAGVVFQGGVILGADTRATGGRTVCDRNCDKIHILAANIACCGAGTSADAMRITEGVKLVLLRMAREMQACLPTRGTATIMARTKSLSSSAPASATETAPAVKTSPNIGENQSRGTISYGGDRGVREVQREHGRVAAAAVLLKQHLFRHQGTVSAALVLGGVDVLGPHLYQ---IQPGGSFDEVMYTALGSGSLAALSVLERGHHESLSEEEAKELVIAAILAGIENDLGSGSNIDICVITADRGLEHTRG 1264
G AEALRRFA RAMKTGTTIAGVVF+GGV+LGADTRATGG+TVCDRNCDKIHILA+NIACCGAGTSADA+RITEG +L LLRMAREMQACLP+ + + +++++ AS D G+ EVQR+H RV AAA+LL++HLFR+QGTVSAALVLGGVDV+G H+YQ I GGS EV +TA+GSGSLAALSVLERG+ E+++E+EAKELV+ I AGI+NDLGSGSNID+CVITA+RGLEH RG
Sbjct: 53 GGAEALRRFASTRAMKTGTTIAGVVFEGGVVLGADTRATGGKTVCDRNCDKIHILASNIACCGAGTSADAVRITEGARLALLRMAREMQACLPSSRSPLLQSQSRADGERPLASC--------------------------DSGLDEVQRKHLRVGAAALLLERHLFRYQGTVSAALVLGGVDVIGEHIYQAPLIHEGGSLAEVEFTAMGSGSLAALSVLERGYRENMTEQEAKELVLEGIAAGIDNDLGSGSNIDLCVITAERGLEHHRG 297
BLAST of mRNA_H-paniculata_contig3054.8273.1 vs. uniprot
Match: D7FTB7_ECTSI (Proteasome subunit beta 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTB7_ECTSI) HSP 1 Score: 315 bits (808), Expect = 4.140e-99 Identity = 168/254 (66.14%), Postives = 200/254 (78.74%), Query Frame = 2
Query: 503 MKTGTTIAGVVFQGGVILGADTRATGGRTVCDRNCDKIHILAANIACCGAGTSADAMRITEGVKLVLLRMAREMQACLPTRGTATIMARTKSLSSSAPASATETAPAVKTSPNIGENQSRGTISYGGDRGVREVQREHGRVAAAAVLLKQHLFRHQGTVSAALVLGGVDVLGPHLYQIQPGGSFDEVMYTALGSGSLAALSVLERGHHESLSEEEAKELVIAAILAGIENDLGSGSNIDICVITADRGLEHTRG 1264
MKTGTTIAGVVF+GGV+LGADTRATGG+TVCDRNCDKIHILA+NIACCGAGTSADA+RITEG +L LLRMAREMQACLP+ + + ++++ ++ R S D G+ EVQR+H RV AAA+LLK+HLFR+QGTVSAALVLGGVDV+G H+YQI GGS EV +TA+GSGSLAALSVLERG+ E+L+E+EAKELV+ I AGI+NDLGSGSNID+CVITA+RGLEH RG
Sbjct: 1 MKTGTTIAGVVFEGGVVLGADTRATGGKTVCDRNCDKIHILASNIACCGAGTSADAVRITEGARLALLRMAREMQACLPSSRSPLLQCQSRA------------------------DEERALASC--DSGLDEVQRKHLRVGAAALLLKRHLFRYQGTVSAALVLGGVDVIGEHIYQIHEGGSLAEVEFTAMGSGSLAALSVLERGYRENLTEQEAKELVLEGIAAGIDNDLGSGSNIDLCVITAERGLEHHRG 228
BLAST of mRNA_H-paniculata_contig3054.8273.1 vs. uniprot
Match: A0A7S3G0S4_9EUKA (Proteasome subunit beta n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3G0S4_9EUKA) HSP 1 Score: 197 bits (500), Expect = 1.660e-54 Identity = 125/267 (46.82%), Postives = 156/267 (58.43%), Query Frame = 2
Query: 488 AEGRAMKTGTTIAGVVFQGGVILGADTRATGGRTVCDRNCDKIHILAANIACCGAGTSADAMRITEGV--KLVLLRMAREMQACLPTRGTATIMARTKSLSSSAPASATETAPAVKTSPNIGENQSRGTISYGGDRGVREVQREHGRVAAAAVLLKQHLFRHQGTVSAALVLGGVDVLGPHLYQIQPGGSFDEVMYTALGSGSLAALSVLERGHHESLSEEEAKELVIAAILAGIENDLGSGSNIDICVITADRGLEHTRGERKEHE 1282
A+ +AMKTGTTI GVVF GGV+LGADTRATGG V D NC+KIH ++ NI CCGAGT+AD +T + +L LLR+A RE+ RVAAAA L Q+L+R+QG VSAALVLGGVD GP LY I P GS D V + +GSGSLAA++V+E G+ + L+ EEAK LV AILAGI+NDLGSGSN+D+ +IT+D G+E+ R RK +E
Sbjct: 31 AKPKAMKTGTTICGVVFDGGVVLGADTRATGGSVVMDPNCEKIHFISKNIYCCGAGTAADTENVTGMMSSQLELLRLATG----------------------------------------------------------REI-----RVAAAATSLAQYLWRYQGHVSAALVLGGVDFTGPSLYSIHPHGSVDFVPFITMGSGSLAAMAVMESGYKDKLTREEAKMLVHDAILAGIQNDLGSGSNVDLNIITSD-GVEYLRNFRKCNE 233
BLAST of mRNA_H-paniculata_contig3054.8273.1 vs. uniprot
Match: A0A835ZKI2_9STRA (Proteasome endopeptidase complex n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKI2_9STRA) HSP 1 Score: 195 bits (496), Expect = 1.220e-53 Identity = 123/271 (45.39%), Postives = 150/271 (55.35%), Query Frame = 2
Query: 497 RAMKTGTTIAGVVFQGGVILGADTRATGGRTVCDRNCDKIHILAANIACCGAGTSADAMRITEGV--KLVLLRMAREMQACLPTRGTATIMARTKSLSSSAPASATETAPAVKTSPNIGENQSRGTISYGGDRGVREVQREHGRVAAAAVLLKQHLFRHQGTVSAALVLGGVDVLGPHLYQIQPGGSFDEVMYTALGSGSLAALSVLERGHHESLSEEEAKELVIAAILAGIENDLGSGSNIDICVITADRGLEHTRGERKEHELNRLDST 1303
RA TGTTI G V++ G++LGADTRATGG VCD+NC+KIH LA NI CCGAGT+AD + TE + +L LLR++ Q+ RV A +LK+ LFR+QG VSAALVLGGVD GPHLY I P GS D++ Y +GSGSLAA+SV E G+ E ++EEEA +LV AILAGI NDLGSGSN DI VI H RG K +EL+ L +T
Sbjct: 53 RAKLTGTTICGCVYKDGIVLGADTRATGGTEVCDKNCEKIHYLAPNIYCCGAGTAADTEKTTELISSQLDLLRLSTGTQS---------------------------------------------------------------RVVTACTMLKRMLFRYQGHVSAALVLGGVDATGPHLYNIYPHGSSDKLPYVTMGSGSLAAMSVFETGYKEDMTEEEATDLVKEAILAGIFNDLGSGSNCDITVIRKGEVSRH-RGYVKPNELSELRAT 259
BLAST of mRNA_H-paniculata_contig3054.8273.1 vs. uniprot
Match: A0A7S0WTZ6_9CHLO (Proteasome subunit beta n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0WTZ6_9CHLO) HSP 1 Score: 193 bits (491), Expect = 2.740e-53 Identity = 120/296 (40.54%), Postives = 160/296 (54.05%), Query Frame = 2
Query: 476 LRRFAEGRAMKTGTTIAGVVFQGGVILGADTRATGGRTVCDRNCDKIHILAANIACCGAGTSADAMRITEGVKLVLLRMAREMQACLPTRGTATIMARTKSLSSSAPASATETAPAVKTSPNIGENQSRGTISYGGDRGVREVQREHGRVAAAAVLLKQHLFRHQGTVSAALVLGGVDVLGPHLYQIQPGGSFDEVMYTALGSGSLAALSVLERGHHESLSEEEAKELVIAAILAGIENDLGSGSNIDICVITADRGLEHTRGERKEHELNRLDSTY*INGHCMYVLGTAVKLPRR 1363
L+ A +A KTGTTIAGV+F+ GV+LGADTR+T G TV D+NC+KIH +A NI CCGAGT+AD +T V L E+ YG RG R V A +LKQHLF++QG VSAALVLGGVD+ GPHL+ + P GS D + + +GSGSL A++V E+G+ + ++ EEA +LV AI +G+ NDLGSGSN+D+C+IT G+E+ R + +D TY +Y GTA + R
Sbjct: 21 LKGMAPPKAWKTGTTIAGVMFKDGVVLGADTRSTSGSTVADKNCEKIHYIAPNIYCCGAGTAADTENVTNMVAAAL-----ELHR------------------------------------------------YGTGRGSR--------VITALTMLKQHLFKYQGHVSAALVLGGVDINGPHLFTVYPHGSTDSLPFCTMGSGSLNAMAVFEQGYKDDMTREEAMDLVARAIRSGVYNDLGSGSNVDLCIITKG-GVEYLRNHQY-----LMDKTYARKFPVVYPKGTAPIIKER 249
BLAST of mRNA_H-paniculata_contig3054.8273.1 vs. uniprot
Match: A9S713_PHYPA (Proteasome subunit beta n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A9S713_PHYPA) HSP 1 Score: 192 bits (488), Expect = 9.070e-53 Identity = 115/254 (45.28%), Postives = 145/254 (57.09%), Query Frame = 2
Query: 506 KTGTTIAGVVFQGGVILGADTRATGGRTVCDRNCDKIHILAANIACCGAGTSADAMRITEGV--KLVLLRMAREMQACLPTRGTATIMARTKSLSSSAPASATETAPAVKTSPNIGENQSRGTISYGGDRGVREVQREHGRVAAAAVLLKQHLFRHQGTVSAALVLGGVDVLGPHLYQIQPGGSFDEVMYTALGSGSLAALSVLERGHHESLSEEEAKELVIAAILAGIENDLGSGSNIDICVITADRGLEHTR 1261
KTGTTI G++F+ GVILGADTRAT G VCD+NC+KIH LA NI+CCGAGT+AD +T+ V +LVL R A ++ RV A +LK HLFR+QG VSAALVLGGVDV GPHL+ + P GS D + + +GSGSLAA+SV E + E+L++EE E+V AAI AGI NDLGSGSN+D+C+IT + G E+ R
Sbjct: 38 KTGTTIVGLIFKDGVILGADTRATEGEIVCDKNCEKIHYLAPNISCCGAGTAADTENVTDMVSSQLVLHRYATGRES---------------------------------------------------------------RVVTALTMLKSHLFRYQGQVSAALVLGGVDVTGPHLHAVYPHGSTDTLPFATMGSGSLAAMSVFESRYKENLTKEEGMEIVSAAICAGIFNDLGSGSNVDLCIITKE-GKEYLR 227
BLAST of mRNA_H-paniculata_contig3054.8273.1 vs. uniprot
Match: A0A2V0P9H4_9CHLO (Proteasome subunit beta n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P9H4_9CHLO) HSP 1 Score: 191 bits (486), Expect = 1.390e-52 Identity = 122/288 (42.36%), Postives = 153/288 (53.12%), Query Frame = 2
Query: 500 AMKTGTTIAGVVFQGGVILGADTRATGGRTVCDRNCDKIHILAANIACCGAGTSADAMRITEGVKLVLLRMAREMQACLPTRGTATIMARTKSLSSSAPASATETAPAVKTSPNIGENQSRGTISYGGDRGVREVQREHGRVAAAAVLLKQHLFRHQGTVSAALVLGGVDVLGPHLYQIQPGGSFDEVMYTALGSGSLAALSVLERGHHESLSEEEAKELVIAAILAGIENDLGSGSNIDICVITADRGLEHTRGERKEHELNRLDSTY*INGHCMYVLGTAVKLPRR 1363
A KTGTTIAGVVF+ GV+LGADTR+T G TV D+NC+KIH +A NI CCGAGT+AD M +T ++ A ++ R R+ A +LK HLF++QG VSAALVLGGVD+ GPHL+ I P GS D + Y +GSGSL A+SV E G E +S EEA LV AAI +G+ NDLGSGSN+D+CVIT D G+++ R HEL + TY Y GTA + R
Sbjct: 29 AWKTGTTIAGVVFKDGVVLGADTRSTSGSTVADKNCEKIHYIAPNIYCCGAGTAADTMNVT-----AMISSALDLH--------------------------------------------------------RYATGRESRIVTAMTMLKSHLFKYQGHVSAALVLGGVDLNGPHLFTIFPHGSTDCLPYATMGSGSLNAMSVFEAGFKEDMSREEAMALVAAAIRSGVYNDLGSGSNVDLCVITKD-GVDYLRN----HEL-LMGKTYQREFPVKYPKGTAPVIKER 249
BLAST of mRNA_H-paniculata_contig3054.8273.1 vs. uniprot
Match: D7FSE0_ECTSI (Proteasome endopeptidase complex n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSE0_ECTSI) HSP 1 Score: 192 bits (487), Expect = 3.170e-52 Identity = 123/284 (43.31%), Postives = 152/284 (53.52%), Query Frame = 2
Query: 467 AEALRRFAEG---RAMKTGTTIAGVVFQGGVILGADTRATGGRTVCDRNCDKIHILAANIACCGAGTSADAMRITEGV--KLVLLRMAREMQACLPTRGTATIMARTKSLSSSAPASATETAPAVKTSPNIGENQSRGTISYGGDRGVREVQREHGRVAAAAVLLKQHLFRHQGTVSAALVLGGVDVLGPHLYQIQPGGSFDEVMYTALGSGSLAALSVLERGHHESLSEEEAKELVIAAILAGIENDLGSGSNIDICVITADRGLEHTRGERKEHELNRLDST 1303
AE + EG RA TGTTI G +++GGV+LGADTRATGG V D+NC+KIH LA NI CCGAGT+AD + TE + +L LLR++ Q+ RV A +LK+ LFR+QG VSAALVLGGVDV GPHLY I P GS D++ Y +GSGSLAA+SV E G E + E EA ELV AI+AG+ NDLGSGSN+D+ VI RG K +E++ L T
Sbjct: 48 AELAKSGKEGTLPRAKLTGTTICGCIYKGGVVLGADTRATGGTEVVDKNCEKIHYLAPNIYCCGAGTAADTEKTTEMISGQLDLLRLSTGTQS---------------------------------------------------------------RVVTACTMLKRMLFRYQGYVSAALVLGGVDVTGPHLYNIYPHGSSDKLPYLTMGSGSLAAMSVFETGFKEDMEEAEAVELVKQAIMAGVFNDLGSGSNVDVTVIRPGGETAIFRGLEKPNEVSELRKT 268
BLAST of mRNA_H-paniculata_contig3054.8273.1 vs. uniprot
Match: M1VD46_CYAM1 (Proteasome subunit beta n=2 Tax=cellular organisms TaxID=131567 RepID=M1VD46_CYAM1) HSP 1 Score: 191 bits (484), Expect = 3.820e-52 Identity = 119/260 (45.77%), Postives = 148/260 (56.92%), Query Frame = 2
Query: 506 KTGTTIAGVVFQGGVILGADTRATGGRTVCDRNCDKIHILAANIACCGAGTSADAMRITEGVKLVLLRMAREMQACLPTRGTATIMARTKSLSSSAPASATETAPAVKTSPNIGENQSRGTISYGGDRGVREVQREHGRVAAAAVLLKQHLFRHQGTVSAALVLGGVDVL-GPHLYQIQPGGSFDEVMYTALGSGSLAALSVLERGHHESLSEEEAKELVIAAILAGIENDLGSGSNIDICVI-TADRGLEHTRGERKEH 1279
KTGTTIAGV+F GGV+LGADTRAT G V D+NC KIH +A+NI CCGAGT+AD T+ L+ +M QA V R+ VAAA LK +LFR+QG +SAALVLGGVD L GP LY + P GS D++ Y ++GSGSLAA++V E HE+L+EEEAK LV AI AGIENDLGSGSN+D+CV+ R +++ RG KE+
Sbjct: 43 KTGTTIAGVLFAGGVVLGADTRATEGNVVADKNCSKIHYIASNIYCCGAGTAADTEATTQ---LIASQMELHRQA---------------------------------------------------------VDRDLVPVAAAMTRLKHYLFRYQGYISAALVLGGVDELNGPSLYTVYPHGSVDQLPYVSMGSGSLAAMAVFEARWHEALTEEEAKCLVYEAISAGIENDLGSGSNVDLCVVKNGGRAVDYLRGYAKEN 242
BLAST of mRNA_H-paniculata_contig3054.8273.1 vs. uniprot
Match: A0A812N4R2_9DINO (Proteasome subunit beta n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812N4R2_9DINO) HSP 1 Score: 190 bits (482), Expect = 6.380e-52 Identity = 114/261 (43.68%), Postives = 145/261 (55.56%), Query Frame = 2
Query: 497 RAMKTGTTIAGVVFQGGVILGADTRATGGRTVCDRNCDKIHILAANIACCGAGTSADAMRITEGVKLVLLRMAREMQACLPTRGTATIMARTKSLSSSAPASATETAPAVKTSPNIGENQSRGTISYGGDRGVREVQREHGRVAAAAVLLKQHLFRHQGTVSAALVLGGVDVLGPHLYQIQPGGSFDEVMYTALGSGSLAALSVLERGHHESLSEEEAKELVIAAILAGIENDLGSGSNIDICVITADRGLEHTRGERKEH 1279
+A+KTGTTI GVVF GGV+LGADTRAT G V D+NC+KIH LA NI CCGAGT+AD IT+ L + R+M GT S RV A LLK+ LF++QG +SAALVLGGVD GPHLY + P GS D++ + ++GSGSLAA+++LE G+ + L+E+EAK LV AI AGI NDLGSGSN+D+ +I D E R ++
Sbjct: 24 KALKTGTTICGVVFDGGVVLGADTRATEGTVVADKNCEKIHYLAPNIHCCGAGTAADTENITQLTASNLELLRRQM----------------------------------------------GTQS---------------RVVTAMTLLKRRLFQYQGHISAALVLGGVDCTGPHLYTVYPHGSTDKLPFVSMGSGSLAAMAMLESGYKDGLTEDEAKALVARAIRAGIFNDLGSGSNVDLTIIRTDGATEQLRSYESQN 223 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3054.8273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3054.8273.1 >prot_H-paniculata_contig3054.8273.1 ID=prot_H-paniculata_contig3054.8273.1|Name=mRNA_H-paniculata_contig3054.8273.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=352bp MQFAVGMAQTCIRILMLLLTLGVPCFTGKLIPADNFDLFPTPGYDSGGDLback to top mRNA from alignment at H-paniculata_contig3054:7991..15809+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3054.8273.1 ID=mRNA_H-paniculata_contig3054.8273.1|Name=mRNA_H-paniculata_contig3054.8273.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7819bp|location=Sequence derived from alignment at H-paniculata_contig3054:7991..15809+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3054:7991..15809+ >mRNA_H-paniculata_contig3054.8273.1 ID=mRNA_H-paniculata_contig3054.8273.1|Name=mRNA_H-paniculata_contig3054.8273.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2112bp|location=Sequence derived from alignment at H-paniculata_contig3054:7991..15809+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |