mRNA_H-paniculata_contig30403.8239.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30403.8239.1
Unique NamemRNA_H-paniculata_contig30403.8239.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig30403.8239.1 vs. uniprot
Match: A0A6H5KBS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBS8_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 7.930e-11
Identity = 36/67 (53.73%), Postives = 40/67 (59.70%), Query Frame = 1 
Query:  220 YSPNERDLPVWGLFKTFTSRQQGFDSLPQVESGLLYVRLLHVANNKQLKSVLLPGVEVRSGNAELYL 420
            Y  N  DLP WG  + F SR + F SL   E     VRLLHVANN QLK +L+PG EV    AELYL
Sbjct:    3 YHVNSHDLPAWGQLEVFNSRPEAFRSLSVDEREDQRVRLLHVANNVQLKRMLVPGKEVCGPGAELYL 69
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BLAST of mRNA_H-paniculata_contig30403.8239.1 vs. uniprot
Match: A0A6H5JUE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUE7_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.260e-10
Identity = 35/67 (52.24%), Postives = 39/67 (58.21%), Query Frame = 1 
Query:  220 YSPNERDLPVWGLFKTFTSRQQGFDSLPQVESGLLYVRLLHVANNKQLKSVLLPGVEVRSGNAELYL 420
            Y  N  DLP WG  + F SR + F SL   E     VRLLHVANN QLK +L+PG E     AELYL
Sbjct:    3 YHVNSHDLPAWGQLEVFNSRPEAFRSLSLDEREDQRVRLLHVANNVQLKRMLVPGKEGCGPGAELYL 69
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BLAST of mRNA_H-paniculata_contig30403.8239.1 vs. uniprot
Match: A0A6H5LBJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBJ9_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.760e-10
Identity = 36/67 (53.73%), Postives = 40/67 (59.70%), Query Frame = 1 
Query:  220 YSPNERDLPVWGLFKTFTSRQQGFDSLPQVESGLLYVRLLHVANNKQLKSVLLPGVEVRSGNAELYL 420
            Y  N  DLP WG  + F SR + F SL   E     VRLLHVANN QLK +L+PG EV    AELYL
Sbjct:  660 YHVNSHDLPAWGQLEVFNSRPEAFHSLSVDEREDQRVRLLHVANNVQLKRMLVPGKEVCGPGAELYL 726
[Close]
BLAST of mRNA_H-paniculata_contig30403.8239.1 vs. uniprot
Match: A0A6H5KEK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK0_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 2.660e-9
Identity = 34/67 (50.75%), Postives = 39/67 (58.21%), Query Frame = 1 
Query:  220 YSPNERDLPVWGLFKTFTSRQQGFDSLPQVESGLLYVRLLHVANNKQLKSVLLPGVEVRSGNAELYL 420
            Y  N  DL  WG  + F SR + F SL   +     VRLLHVANN QLK +L+PG EV    AELYL
Sbjct:    3 YHVNSHDLTAWGQLEVFNSRPEAFHSLSVDKRQDQRVRLLHVANNVQLKRMLVPGKEVCGPGAELYL 69
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30403.8239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KBS8_9PHAE7.930e-1153.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUE7_9PHAE1.260e-1052.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LBJ9_9PHAE1.760e-1053.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEK0_9PHAE2.660e-950.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30403contigH-paniculata_contig30403:416..1833 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size422
Cds size420
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929933.4948575-CDS-H-paniculata_contig30403:417..6541622929933.4948575-CDS-H-paniculata_contig30403:417..654Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30403 418..654 -
1691481075.8585346-CDS-H-paniculata_contig30403:417..6541691481075.8585346-CDS-H-paniculata_contig30403:417..654Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30403 418..654 -
1622929933.510687-CDS-H-paniculata_contig30403:1650..18331622929933.510687-CDS-H-paniculata_contig30403:1650..1833Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30403 1651..1833 -
1691481075.8752236-CDS-H-paniculata_contig30403:1650..18331691481075.8752236-CDS-H-paniculata_contig30403:1650..1833Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30403 1651..1833 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30403.8239.1prot_H-paniculata_contig30403.8239.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30403 418..1833 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30403.8239.1

>prot_H-paniculata_contig30403.8239.1 ID=prot_H-paniculata_contig30403.8239.1|Name=mRNA_H-paniculata_contig30403.8239.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=140bp
TPRWEIQSYRWALRVIKLWRRRLIVRGRLRSSWLLLMVHEKTLQGEQKRL
LLAAYKEGKFKVVPSLHSKEGESYSPNERDLPVWGLFKTFTSRQQGFDSL
PQVESGLLYVRLLHVANNKQLKSVLLPGVEVRSGNAELYL
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mRNA from alignment at H-paniculata_contig30403:416..1833-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30403.8239.1 ID=mRNA_H-paniculata_contig30403.8239.1|Name=mRNA_H-paniculata_contig30403.8239.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1418bp|location=Sequence derived from alignment at H-paniculata_contig30403:416..1833- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTCCAAGATGGGAGATACAGTCATATCGCTGGGCGCTGAGAGTAATCAA
ATTATGGAGACGGCGCTTGATCGTGCGAGGAAGGTTGAGGTCTTCTTGGC
TTCTTCTGATGGTGCACGAGAAGACATTGCAAGGCGAGCAGAAACGGCTT
TTGTTGGCGGCTTACAAGGAGGGGAAATTCAAGGTCAGCACAGAGTCGGA
GATTGTCCAATGTTTGGTGTGGTGTTGTGTGCGACAGTCATCAACATCTA
CAAGTACATGTGTTGCGCAAGCACTATCACTATCTGCAGTACCAAACAGT
TGAGCCAGTTATGAAAACTTTGTCAACGCCGATTGACAGAGATGCCTTAG
TAGTAGTGGCACCCGAAGAAAGCCATTTAAGGCTTGGACAATAGAACATA
TTAATTAACGGAAGCCGAATTGACATTGATGCGTGTTGAGAAGCTGTTTT
GTTCGCGCTGCCGTTTCTTGATGATGCAGACACTTATTATTATGTTGTAT
ATTATACGTTGACTACTATGTAATATATTCCCCCTTGCTCCCCTTGTTAT
ACAGGCATCATCATCCCCGGCCAATGAGGTTCTCATTCGCCATGGTATTC
TACCGGATAGGATCCCAGTTGATACAACGCCTGCCAAAATTAAAGCAATG
GTGGCAGCAGAAGTGGAAAGGCAATGGGTCACTTTGAAGGCTCAGAGACA
GGCAGAAATTAACGATGGTTTGAACACTTACGAGCTTAATGAAGAAGAAA
AACACGAGGCCCAAGACATAGCAGCACACAAAATTATCGAGACCATCACC
CTGAGCTTTGGCTACACCCTTGCCTCTAGCGGGTCATCAGAGGACGTAAG
CAGGCGCTCAATACTATATTTTGTCTAGGTTTCAAATCCACAGCATAACA
AGCAATTAGCAAGGGTTATGTGTCCTTATCGTAAGTAGTGGAAATGAATG
TTGGACTTACTTACGAAAGGGCGGGATTTTGGCAGAGCGACACCCTACTC
TTCATCGTTTCATATGCTGACTGCATTATTGCTGCGTCTGTGCCTTATGT
TTATGAACATTAATACTGATCCTCTGCTGACCTTTTTACAGATGACTGAG
TAAACTTTTTGTCATGGCTGCTTCTCACAATTTTGTCCGCACGAACCTAC
CGTCTTTGATATGGCTTTACTTACAACAGGTCGTTCCTTCTCTGCACTCC
AAGGAAGGCGAATCGTACAGTCCCAACGAACGCGATCTTCCTGTCTGGGG
GCTCTTCAAGACCTTCACCTCGCGACAGCAGGGTTTCGACTCACTTCCTC
AAGTAGAGAGCGGGCTGCTATACGTGCGTCTACTGCATGTGGCAAATAAC
AAGCAGCTCAAGAGTGTGCTACTCCCCGGCGTTGAGGTTCGCAGTGGGAA
CGCAGAGCTGTACCTGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig30403:416..1833-

>mRNA_H-paniculata_contig30403.8239.1 ID=mRNA_H-paniculata_contig30403.8239.1|Name=mRNA_H-paniculata_contig30403.8239.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=840bp|location=Sequence derived from alignment at H-paniculata_contig30403:416..1833- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTCCAAGATGGGAGATACAGTCATATCGCTGGGCGCTGAGAGTAATCAA
ATTATGGAGACGGCGCTTGATCGTGCGAGGAAGGTTGAGGTCTTCTTGGC
TTCTTCTGATGGTGCACGAGAAGACATTGCAAGGCGAGCAGAAACGGCTT
TTGTTGGCGGCTTACAAGGAGGGGAAATTCAAGACTCCAAGATGGGAGAT
ACAGTCATATCGCTGGGCGCTGAGAGTAATCAAATTATGGAGACGGCGCT
TGATCGTGCGAGGAAGGTTGAGGTCTTCTTGGCTTCTTCTGATGGTGCAC
GAGAAGACATTGCAAGGCGAGCAGAAACGGCTTTTGTTGGCGGCTTACAA
GGAGGGGAAATTCAAGGTCGTTCCTTCTCTGCACTCCAAGGAAGGCGAAT
CGTACAGTCCCAACGAACGCGATCTTCCTGTCTGGGGGCTCTTCAAGACC
TTCACCTCGCGACAGCAGGGTTTCGACTCACTTCCTCAAGTAGAGAGCGG
GCTGCTATACGTGCGTCTACTGCATGTGGCAAATAACAAGCAGCTCAAGA
GTGTGCTACTCCCCGGCGTTGAGGTTCGCAGTGGGAACGCAGAGCTGTAC
CTGGTCGTTCCTTCTCTGCACTCCAAGGAAGGCGAATCGTACAGTCCCAA
CGAACGCGATCTTCCTGTCTGGGGGCTCTTCAAGACCTTCACCTCGCGAC
AGCAGGGTTTCGACTCACTTCCTCAAGTAGAGAGCGGGCTGCTATACGTG
CGTCTACTGCATGTGGCAAATAACAAGCAGCTCAAGAGTGTGCTACTCCC
CGGCGTTGAGGTTCGCAGTGGGAACGCAGAGCTGTACCTG
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