mRNA_H-paniculata_contig30370.8232.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30370.8232.1
Unique NamemRNA_H-paniculata_contig30370.8232.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig30370.8232.1 vs. uniprot
Match: D7FLH2_ECTSI (AAA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLH2_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 3.950e-30
Identity = 59/66 (89.39%), Postives = 61/66 (92.42%), Query Frame = 1
Query:    1 PFPLFGLLQRRFSRSFQVGLPDRKMRKAVLMKALEDVEVEEGFDWRELAVNTEGYSCGDVVELCRE 198
            P+ L   +QRRFSRSFQVGLPDRKMRKAVLMKALEDVEVEEGFDWRELAV TEGYSCGDVVELCRE
Sbjct:  569 PWDLDPAVQRRFSRSFQVGLPDRKMRKAVLMKALEDVEVEEGFDWRELAVKTEGYSCGDVVELCRE 634          
BLAST of mRNA_H-paniculata_contig30370.8232.1 vs. uniprot
Match: UPI001929F89A (ATPase family AAA domain-containing protein 1-B-like n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI001929F89A)

HSP 1 Score: 62.4 bits (150), Expect = 9.310e-10
Identity = 30/66 (45.45%), Postives = 43/66 (65.15%), Query Frame = 1
Query:    1 PFPLFGLLQRRFSRSFQVGLPDRKMRKAVLMKALEDVEVEEGFDWRELAVNTEGYSCGDVVELCRE 198
            P  L   + RRF+++F+VGLPD+  R A+L   L+   VE+G D+  +A  T GYS  D++ELCRE
Sbjct:  165 PTELDEAILRRFTQTFEVGLPDQNGRAAILKSILKKARVEDGIDYNHIASLTTGYSGSDLLELCRE 230          
BLAST of mRNA_H-paniculata_contig30370.8232.1 vs. uniprot
Match: A0A830CBE5_9LAMI (ATPase family aaa domain-containing protein 1 n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830CBE5_9LAMI)

HSP 1 Score: 60.1 bits (144), Expect = 7.110e-9
Identity = 28/66 (42.42%), Postives = 44/66 (66.67%), Query Frame = 1
Query:    1 PFPLFGLLQRRFSRSFQVGLPDRKMRKAVLMKALEDVEVEEGFDWRELAVNTEGYSCGDVVELCRE 198
            P  L   + RR  +SF++G+PDRK R A+L   L+D +VE+G D+  +A   EGY+  D++ELC++
Sbjct:  234 PSELDEAILRRLPQSFEIGMPDRKDRVAILKVVLKDEKVEDGIDYDRIAGLCEGYTGSDLIELCKK 299          
BLAST of mRNA_H-paniculata_contig30370.8232.1 vs. uniprot
Match: A0A3S3MPS4_9MAGN (AAA+ ATPase domain-containing protein n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3MPS4_9MAGN)

HSP 1 Score: 58.9 bits (141), Expect = 1.870e-8
Identity = 30/64 (46.88%), Postives = 39/64 (60.94%), Query Frame = 1
Query:    1 PFPLFGLLQRRFSRSFQVGLPDRKMRKAVLMKALEDVEVEEGFDWRELAVNTEGYSCGDVVELC 192
            PF L   + RRF R   VGLP  + R+ +L   L   +VE+G D++ELAV TEGYS  D+  LC
Sbjct:  676 PFDLDEAIIRRFERRIMVGLPSVECREKILRTVLSKEKVEDGLDYKELAVMTEGYSGSDLKNLC 739          
BLAST of mRNA_H-paniculata_contig30370.8232.1 vs. uniprot
Match: A0A0U9HJM5_KLENI (AAA-type ATPase family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A0U9HJM5_KLENI)

HSP 1 Score: 58.5 bits (140), Expect = 2.450e-8
Identity = 29/66 (43.94%), Postives = 40/66 (60.61%), Query Frame = 1
Query:    1 PFPLFGLLQRRFSRSFQVGLPDRKMRKAVLMKALEDVEVEEGFDWRELAVNTEGYSCGDVVELCRE 198
            P+ L   + RR  R+F+VG+PDR  R A+L   LE   VE+G D   LA  TEGYS  D+ E+ ++
Sbjct:  232 PYDLDPAILRRLPRTFEVGMPDRSQRAAILEVLLEGENVEDGIDTHALADMTEGYSGSDLTEIAKQ 297          
BLAST of mRNA_H-paniculata_contig30370.8232.1 vs. uniprot
Match: A0A5P1EMR6_ASPOF (AAA domain-containing protein n=2 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1EMR6_ASPOF)

HSP 1 Score: 58.5 bits (140), Expect = 2.560e-8
Identity = 30/64 (46.88%), Postives = 39/64 (60.94%), Query Frame = 1
Query:    1 PFPLFGLLQRRFSRSFQVGLPDRKMRKAVLMKALEDVEVEEGFDWRELAVNTEGYSCGDVVELC 192
            PF L   + RRF R   VGLP  + R+++L       +VEEG D++ELAV TEGYS  D+  LC
Sbjct:  747 PFDLDEAIIRRFERRIMVGLPSVENRESILRTLFSKEKVEEGLDYKELAVMTEGYSGSDLKNLC 810          
BLAST of mRNA_H-paniculata_contig30370.8232.1 vs. uniprot
Match: A0A6I9THZ4_SESIN (ATPase family AAA domain-containing protein 1 n=1 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9THZ4_SESIN)

HSP 1 Score: 58.2 bits (139), Expect = 3.370e-8
Identity = 26/66 (39.39%), Postives = 44/66 (66.67%), Query Frame = 1
Query:    1 PFPLFGLLQRRFSRSFQVGLPDRKMRKAVLMKALEDVEVEEGFDWRELAVNTEGYSCGDVVELCRE 198
            P  L   + RR  ++F++G+PDRK R A+L   L+D +VE+G D+  +A   +GY+  D++ELC++
Sbjct:  244 PSELDEAILRRLPQAFEIGIPDRKERVAILKVILKDEKVEDGIDYDHIAALCDGYTGSDLLELCKK 309          
BLAST of mRNA_H-paniculata_contig30370.8232.1 vs. uniprot
Match: A0A4D8YUS8_SALSN (Vacuolar protein sorting-associated protein 26 n=1 Tax=Salvia splendens TaxID=180675 RepID=A0A4D8YUS8_SALSN)

HSP 1 Score: 58.2 bits (139), Expect = 3.480e-8
Identity = 28/66 (42.42%), Postives = 42/66 (63.64%), Query Frame = 1
Query:    1 PFPLFGLLQRRFSRSFQVGLPDRKMRKAVLMKALEDVEVEEGFDWRELAVNTEGYSCGDVVELCRE 198
            P  L   + RR  +SF++GLPDRK R A+L   L+D  VE+  D+  +A   EGY+  D++ELC++
Sbjct:  241 PSELDEAILRRLPQSFEIGLPDRKDRVAILKVILKDETVEDDIDYERIAALCEGYTGSDLLELCKK 306          
BLAST of mRNA_H-paniculata_contig30370.8232.1 vs. uniprot
Match: I1HDG7_BRADI (AAA domain-containing protein n=4 Tax=Pooideae TaxID=147368 RepID=I1HDG7_BRADI)

HSP 1 Score: 58.2 bits (139), Expect = 3.490e-8
Identity = 28/64 (43.75%), Postives = 40/64 (62.50%), Query Frame = 1
Query:    1 PFPLFGLLQRRFSRSFQVGLPDRKMRKAVLMKALEDVEVEEGFDWRELAVNTEGYSCGDVVELC 192
            PF L   + RRF R   VGLP  + R+ ++ + L   +V+EG D++ELA+ TEGYS  D+  LC
Sbjct:  679 PFDLDEAIIRRFERRIMVGLPSVQNRELIMRRLLSKEKVDEGIDYKELAIMTEGYSGSDLKNLC 742          
BLAST of mRNA_H-paniculata_contig30370.8232.1 vs. uniprot
Match: A0A2I0WEC7_9ASPA (Katanin p60 ATPase-containing subunit A1 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0WEC7_9ASPA)

HSP 1 Score: 57.8 bits (138), Expect = 4.770e-8
Identity = 29/64 (45.31%), Postives = 39/64 (60.94%), Query Frame = 1
Query:    1 PFPLFGLLQRRFSRSFQVGLPDRKMRKAVLMKALEDVEVEEGFDWRELAVNTEGYSCGDVVELC 192
            PF L   + RRF R   VGLP  + R+ +L   L   +VE+G +++ELAV TEGYS  D+  LC
Sbjct:  676 PFDLDEAIVRRFERRIMVGLPSVESRELILKSLLSKEKVEDGLEYKELAVMTEGYSGSDLKNLC 739          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30370.8232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLH2_ECTSI3.950e-3089.39AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
UPI001929F89A9.310e-1045.45ATPase family AAA domain-containing protein 1-B-li... [more]
A0A830CBE5_9LAMI7.110e-942.42ATPase family aaa domain-containing protein 1 n=1 ... [more]
A0A3S3MPS4_9MAGN1.870e-846.88AAA+ ATPase domain-containing protein n=1 Tax=Cinn... [more]
A0A0U9HJM5_KLENI2.450e-843.94AAA-type ATPase family protein n=1 Tax=Klebsormidi... [more]
A0A5P1EMR6_ASPOF2.560e-846.88AAA domain-containing protein n=2 Tax=Asparagus of... [more]
A0A6I9THZ4_SESIN3.370e-839.39ATPase family AAA domain-containing protein 1 n=1 ... [more]
A0A4D8YUS8_SALSN3.480e-842.42Vacuolar protein sorting-associated protein 26 n=1... [more]
I1HDG7_BRADI3.490e-843.75AAA domain-containing protein n=4 Tax=Pooideae Tax... [more]
A0A2I0WEC7_9ASPA4.770e-845.31Katanin p60 ATPase-containing subunit A1 n=1 Tax=D... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30370contigH-paniculata_contig30370:628..840 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score123.6
Seed ortholog evalue3.6e-26
Seed eggNOG ortholog2880.D7FLH2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATP binding
EggNOG OGsCOG0464@1,KOG0737@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size213
Cds size213
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929932.5908296-CDS-H-paniculata_contig30370:627..8401622929932.5908296-CDS-H-paniculata_contig30370:627..840Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30370 628..840 +
1691481075.394582-CDS-H-paniculata_contig30370:627..8401691481075.394582-CDS-H-paniculata_contig30370:627..840Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30370 628..840 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30370.8232.1prot_H-paniculata_contig30370.8232.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30370 628..840 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30370.8232.1

>prot_H-paniculata_contig30370.8232.1 ID=prot_H-paniculata_contig30370.8232.1|Name=mRNA_H-paniculata_contig30370.8232.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp
PFPLFGLLQRRFSRSFQVGLPDRKMRKAVLMKALEDVEVEEGFDWRELAV
NTEGYSCGDVVELCREVTLV*
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mRNA from alignment at H-paniculata_contig30370:628..840+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30370.8232.1 ID=mRNA_H-paniculata_contig30370.8232.1|Name=mRNA_H-paniculata_contig30370.8232.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=213bp|location=Sequence derived from alignment at H-paniculata_contig30370:628..840+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCTTTCCCCTGTTTGGGTTGCTGCAGAGGCGTTTTTCGCGGTCTTTCCA AGTCGGTCTGCCGGACCGCAAGATGCGCAAGGCGGTGCTGATGAAAGCTT TGGAGGATGTAGAAGTGGAGGAAGGCTTCGACTGGCGCGAACTAGCTGTC AACACGGAGGGGTATAGCTGCGGCGACGTGGTGGAGCTGTGCCGAGAGGT GACACTTGTTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig30370:628..840+

>mRNA_H-paniculata_contig30370.8232.1 ID=mRNA_H-paniculata_contig30370.8232.1|Name=mRNA_H-paniculata_contig30370.8232.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at H-paniculata_contig30370:628..840+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCTTTCCCCTGTTTGGGTTGCTGCAGAGGCGTTTTTCGCGGTCTTTCCA
AGTCGGTCTGCCGGACCGCAAGATGCGCAAGGCGGTGCTGATGAAAGCTT
TGGAGGATGTAGAAGTGGAGGAAGGCTTCGACTGGCGCGAACTAGCTGTC
AACACGGAGGGGTATAGCTGCGGCGACGTGGTGGAGCTGTGCCGAGAGGT
GACACTTGTTTGACCCTTTCCCCTGTTTGGGTTGCTGCAGAGGCGTTTTT
CGCGGTCTTTCCAAGTCGGTCTGCCGGACCGCAAGATGCGCAAGGCGGTG
CTGATGAAAGCTTTGGAGGATGTAGAAGTGGAGGAAGGCTTCGACTGGCG
CGAACTAGCTGTCAACACGGAGGGGTATAGCTGCGGCGACGTGGTGGAGC
TGTGCCGAGAGGTGACACTTGTTTGA
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