mRNA_H-paniculata_contig30343.8225.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30343.8225.1
Unique NamemRNA_H-paniculata_contig30343.8225.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig30343.8225.1 vs. uniprot
Match: A0A6A3BY51_HIBSY (Histone acetyltransferase n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3BY51_HIBSY)

HSP 1 Score: 120 bits (302), Expect = 6.740e-29
Identity = 69/178 (38.76%), Postives = 92/178 (51.69%), Query Frame = 1
Query:    4 PLELVHTDRAGPVD-KSFGGCRFAIIFVDDYSRMRKVYTLRQKSGALWTLTQFERVQE-----------------------------------FSAAYTPQQIDVAARSWRSIFEMAIANMITVNMGRRYWAEAVRLAVYCLNRAPMRPHNGGTPYEKWHGETPKLDHLRVFGCTAYV 429
            PLE+VHTD AGP D  S GG R+ + F+DD+SR   +Y L++KS AL  L +F+ + E                                    +A YTPQQ  VA R  R+I +MA + +    + R +WAEAVR AVY LNR P +     TP E W G+ P + HL++FGC AY 
Sbjct:  388 PLEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLREFKAMSEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTARYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHLKIFGCIAYA 565          
BLAST of mRNA_H-paniculata_contig30343.8225.1 vs. uniprot
Match: A0A6A2WXP0_HIBSY (Phospholipase D n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WXP0_HIBSY)

HSP 1 Score: 119 bits (298), Expect = 2.320e-28
Identity = 68/178 (38.20%), Postives = 91/178 (51.12%), Query Frame = 1
Query:    4 PLELVHTDRAGPVD-KSFGGCRFAIIFVDDYSRMRKVYTLRQKSGALWTLTQFERVQE-----------------------------------FSAAYTPQQIDVAARSWRSIFEMAIANMITVNMGRRYWAEAVRLAVYCLNRAPMRPHNGGTPYEKWHGETPKLDHLRVFGCTAYV 429
            PLE+VHTD AGP D  S GG R+ + F+DD+SR   +Y L++KS AL  L +F+ + E                                    +  YTPQQ  VA R  R+I +MA + +    + R +WAEAVR AVY LNR P +     TP E W G+ P + HL++FGC AY 
Sbjct: 1310 PLEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLREFKAMSEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTGRYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHLKIFGCIAYA 1487          
BLAST of mRNA_H-paniculata_contig30343.8225.1 vs. uniprot
Match: A0A2G2VUS6_CAPBA (Integrase catalytic domain-containing protein n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2VUS6_CAPBA)

HSP 1 Score: 115 bits (287), Expect = 6.890e-27
Identity = 66/178 (37.08%), Postives = 92/178 (51.69%), Query Frame = 1
Query:    1 EPLELVHTDRAGPVD-KSFGGCRFAIIFVDDYSRMRKVYTLRQKS----------------------------GALWTLTQFER-------VQEFSAAYTPQQIDVAARSWRSIFEMAIANMITVNMGRRYWAEAVRLAVYCLNRAPMRPHNGGTPYEKWHGETPKLDHLRVFGCTAY 426
            +PLE+VH+D AGP D  S GG R+ + F+DD+SR   VY L++KS                            G  +T   FE        + + +  YTPQQ  VA R  R+I ++A + +   ++ R +WAEAVR AVY LNR P +     TP E W G+ P + HL++FGC AY
Sbjct:  841 KPLEIVHSDLAGPFDIPSLGGNRYYLTFIDDFSRRSWVYILKEKSETLDKFKEFKAMVEKQSGYYVKILRSDRGGEYTANLFEDFVKEHGIIHQLTVRYTPQQNGVAERKNRTILDLARSMVKGKHLPRNFWAEAVRCAVYLLNRCPTKSVRYMTPNEAWSGQKPGVGHLKIFGCIAY 1018          
BLAST of mRNA_H-paniculata_contig30343.8225.1 vs. uniprot
Match: A0A4C1SRD4_EUMVA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1SRD4_EUMVA)

HSP 1 Score: 107 bits (266), Expect = 3.930e-24
Identity = 53/147 (36.05%), Postives = 78/147 (53.06%), Query Frame = 1
Query:    4 PLELVHTDRAGPVDKS-FGGCRFAIIFVDDYSRMRKVYTLRQKSGALWTLTQFERVQEFSAAYTPQQIDVAARSWRSIFEMAIANMITVNMGRRYWAEAVRLAVYCLNRAPMRPHNGGTPYEKWHGETPKLDHLRVFGCTAYVMFQS 441
            PLEL+H+D  GP++ S FGG ++ I ++DD++RM  +                         YTPQQ  +A R  R++ E A   +   N+ ++YWAEA+  A Y +NR+P +   G TPYE W G  P L H+++FG  A V   S
Sbjct:  186 PLELIHSDLCGPMENSSFGGMKYFITYIDDFTRMTSI------------------------PYTPQQNGMAERMNRTLVERARCMLFYANLEKKYWAEALATAAYVVNRSPTKSLQGKTPYEMWKGMKPNLSHMKIFGSEAMVHVPS 308          
BLAST of mRNA_H-paniculata_contig30343.8225.1 vs. uniprot
Match: A0A0V1FB66_TRIPS (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella pseudospiralis TaxID=6337 RepID=A0A0V1FB66_TRIPS)

HSP 1 Score: 105 bits (262), Expect = 1.500e-23
Identity = 62/154 (40.26%), Postives = 82/154 (53.25%), Query Frame = 1
Query:    4 PLELVHTDRAGP-VDKSFGGCRFAIIFVDDYSRMRKVYTLRQKSGALW----TLTQFER-------VQEFSAAYTPQQIDVAARSWRSIFEMAIANMITVNMGRRYWAEAVRLAVYCLNRAPMRPHNGGTPYEKWHGETPKLDHLRVFGCTAYV 429
            P E++H D  G  +  S GG R+ I F D+ S  RKVY ++ K   L      LT+ ++       V E +  Y PQ   +A R  R++ E A A +   N+ R  WAEAV  A Y LNR P R     TPYE+W G  P ++HLR+FGC AYV
Sbjct:  199 PGEIIHADVCGSFIHPSVGGNRYFICFKDESSGYRKVYFMKTKDEVLRCLKIALTEIKQETGQKKIVHEKTPPYAPQCNGMAERENRTLVEKARAMLHKRNLPRCLWAEAVHTAAYLLNRIPHRKEITKTPYEEWFGRRPTVEHLRIFGCDAYV 352          
BLAST of mRNA_H-paniculata_contig30343.8225.1 vs. uniprot
Match: A0A0V1KP93_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Trichinella TaxID=6333 RepID=A0A0V1KP93_9BILA)

HSP 1 Score: 103 bits (258), Expect = 5.420e-23
Identity = 63/154 (40.91%), Postives = 83/154 (53.90%), Query Frame = 1
Query:    4 PLELVHTDRAGP-VDKSFGGCRFAIIFVDDYSRMRKVYTLRQKSGAL----WTLTQFER-------VQEFSAAYTPQQIDVAARSWRSIFEMAIANMITVNMGRRYWAEAVRLAVYCLNRAPMRPHNGGTPYEKWHGETPKLDHLRVFGCTAYV 429
            P E++H D  GP +  S GG R+ I F D+ S  RKVY ++ K   L      LT+ ++       V E +  YTPQ   +A R  R++ E A A + T N+ R   AEAV  A Y LNR P R     TPYE+W G    ++HLR+FGC AYV
Sbjct:  472 PGEIIHADVCGPFIHPSVGGNRYFICFKDESSGYRKVYFMKTKDEVLRCLKTALTEIKQETGQKKIVHEKTPPYTPQCNGMAERENRTLAEKARAMLHTRNLPRCLCAEAVHTAAYLLNRIPNRKEITKTPYEEWFGRRLTVEHLRIFGCDAYV 625          
BLAST of mRNA_H-paniculata_contig30343.8225.1 vs. uniprot
Match: A0A8J5H6Z3_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5H6Z3_ZINOF)

HSP 1 Score: 103 bits (257), Expect = 7.220e-23
Identity = 59/155 (38.06%), Postives = 80/155 (51.61%), Query Frame = 1
Query:    1 EPLELVHTDRAGPVDKSFGGC-----RFAIIFVDDYSRMRKVYTLRQKSGALWTLTQFERV-------QEFSAAYTPQQIDVAARSWRSIFEMAIANMITVNMGRRYWAEAVRLAVYCLNRAPMRPHNGGTPYEKWHGETPKLDHLRVFGCTAYV 429
            +PLEL+H D  GP+  S         +F ++   +     K+ TLR   G  +  T+F R        +  +A YTPQQ  V  R  R++  MA + +   +M  R+W EA+R AVY LNR P +     TP+E W G  P L HLRVFGC AYV
Sbjct:    9 KPLELLHADICGPISPSKNDAFQAFKKFKVL--TENKTGYKIRTLRTDRGGEFLSTEFTRFCGNEGIERHLTAPYTPQQNGVVERRNRTVIAMARSLLKGTHMPARFWGEAIRHAVYLLNRLPTKALGERTPFEAWMGRKPHLSHLRVFGCVAYV 161          
BLAST of mRNA_H-paniculata_contig30343.8225.1 vs. uniprot
Match: A0A0V1JKA5_TRIPS (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Trichinella pseudospiralis TaxID=6337 RepID=A0A0V1JKA5_TRIPS)

HSP 1 Score: 103 bits (257), Expect = 7.320e-23
Identity = 60/154 (38.96%), Postives = 82/154 (53.25%), Query Frame = 1
Query:    4 PLELVHTDRAGP-VDKSFGGCRFAIIFVDDYSRMRKVYTLRQKSGALW----TLTQFER-------VQEFSAAYTPQQIDVAARSWRSIFEMAIANMITVNMGRRYWAEAVRLAVYCLNRAPMRPHNGGTPYEKWHGETPKLDHLRVFGCTAYV 429
            P E++H D  G  +  S GG R+ I F ++ S   KVY ++ K   L      LT+ ++       V E ++ Y PQ   +A R  R++ E A A +   N+ R  WAEAV  A Y LNR P R     TPYE+W G  P ++HLR+FGC AYV
Sbjct:  477 PGEIIHADVCGSFIHPSVGGNRYFICFKNESSEYCKVYLMKTKDEVLRCLKIALTEIKQETGQKKIVHEKTSPYAPQCNGMAERENRTLVEKARAMLHKRNLPRCLWAEAVHTAAYLLNRIPQRKEITKTPYEEWFGRRPTVEHLRIFGCVAYV 630          
BLAST of mRNA_H-paniculata_contig30343.8225.1 vs. uniprot
Match: A0A6A3C4D2_HIBSY (FAD-binding Berberine family protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3C4D2_HIBSY)

HSP 1 Score: 102 bits (254), Expect = 1.910e-22
Identity = 60/150 (40.00%), Postives = 79/150 (52.67%), Query Frame = 1
Query:    4 PLELVHTDRAGPVD-KSFGGCRFAIIFVDDYSRMRKVYTLRQKSGALWTLTQFER-------VQEFSAAYTPQQIDVAARSWRSIFEMAIANMITVNMGRRYWAEAVRLAVYCLNRAPMRPHNGGTPYEKWHGETPKLDHLRVFGCTAYV 429
            P +L+HTD AGP D  S GG R          +  K+  LR   G  +T   FE        + + +A YTPQQ  VA R  R+I +MA + +    + R +WAEAVR AVY LNR P +     TP E W G+ P + HL++FGC AY 
Sbjct:  372 PNQLLHTDIAGPFDIPSLGGNRIQSNVGKQSGQYLKI--LRSDRGGEYTSKLFEEFCKEHGIIHQLTARYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHLKIFGCIAYA 519          
BLAST of mRNA_H-paniculata_contig30343.8225.1 vs. uniprot
Match: A0A6A3AQW2_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3AQW2_HIBSY)

HSP 1 Score: 100 bits (250), Expect = 6.680e-22
Identity = 56/147 (38.10%), Postives = 76/147 (51.70%), Query Frame = 1
Query:    7 LELVHTDRAGP-VDKSFGGCRFAIIFVDDYSRMRKVYTLRQKSGA-----LWTLTQFERVQEFSAAYTPQQIDVAARSWRSIFEMAIANMITVNMGRRYWAEAVRLAVYCLNRAPMRPHNGGTPYEKWHGETPKLDHLRVFGCTAYV 429
            L+ VH+D  GP    S GG R+ + F+DD+SR   VY L+QKS       LW   +    + F+   TPQ   V  R  RS+ E A    +   + + +WAEAV +A Y +NR+P     G    E W G     D+LR+FGC AYV
Sbjct: 1242 LDYVHSDVWGPSTTPSLGGSRYYVTFIDDFSRKVWVYFLKQKSEVFEKFKLWKAEERGIQRHFTVRKTPQHNGVVERMNRSLNERARCLRLNAGLPKHFWAEAVNMACYLINRSPRASLAGKVAEEVWTGHDISFDNLRIFGCPAYV 1388          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30343.8225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A3BY51_HIBSY6.740e-2938.76Histone acetyltransferase n=2 Tax=Hibiscus syriacu... [more]
A0A6A2WXP0_HIBSY2.320e-2838.20Phospholipase D n=1 Tax=Hibiscus syriacus TaxID=10... [more]
A0A2G2VUS6_CAPBA6.890e-2737.08Integrase catalytic domain-containing protein n=1 ... [more]
A0A4C1SRD4_EUMVA3.930e-2436.05Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V1FB66_TRIPS1.500e-2340.26Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V1KP93_9BILA5.420e-2340.91Retrovirus-related Pol polyprotein from transposon... [more]
A0A8J5H6Z3_ZINOF7.220e-2338.06Integrase catalytic domain-containing protein n=1 ... [more]
A0A0V1JKA5_TRIPS7.320e-2338.96Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3C4D2_HIBSY1.910e-2240.00FAD-binding Berberine family protein n=1 Tax=Hibis... [more]
A0A6A3AQW2_HIBSY6.680e-2238.10Uncharacterized protein n=1 Tax=Hibiscus syriacus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30343contigH-paniculata_contig30343:19..567 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score110.2
Seed ortholog evalue8.6e-22
Seed eggNOG ortholog4530.OS08T0125300-01
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs37THH@33090,3GG2K@35493,3IIIB@38820,3M5VU@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons2
Model size444
Cds size444
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929932.0300004-CDS-H-paniculata_contig30343:18..2941622929932.0300004-CDS-H-paniculata_contig30343:18..294Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30343 19..294 -
1691481075.1125503-CDS-H-paniculata_contig30343:18..2941691481075.1125503-CDS-H-paniculata_contig30343:18..294Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30343 19..294 -
1622929932.0538764-CDS-H-paniculata_contig30343:399..5671622929932.0538764-CDS-H-paniculata_contig30343:399..567Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30343 400..567 -
1691481075.1253152-CDS-H-paniculata_contig30343:399..5671691481075.1253152-CDS-H-paniculata_contig30343:399..567Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30343 400..567 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30343.8225.1prot_H-paniculata_contig30343.8225.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30343 19..567 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30343.8225.1

>prot_H-paniculata_contig30343.8225.1 ID=prot_H-paniculata_contig30343.8225.1|Name=mRNA_H-paniculata_contig30343.8225.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=148bp
EPLELVHTDRAGPVDKSFGGCRFAIIFVDDYSRMRKVYTLRQKSGALWTL
TQFERVQEFSAAYTPQQIDVAARSWRSIFEMAIANMITVNMGRRYWAEAV
RLAVYCLNRAPMRPHNGGTPYEKWHGETPKLDHLRVFGCTAYVMFQS*
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mRNA from alignment at H-paniculata_contig30343:19..567-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30343.8225.1 ID=mRNA_H-paniculata_contig30343.8225.1|Name=mRNA_H-paniculata_contig30343.8225.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=549bp|location=Sequence derived from alignment at H-paniculata_contig30343:19..567- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCCGTTGGAGCTGGTGCACACCGACAGAGCCGGGCCGGTGGACAAGTC CTTCGGAGGATGTCGCTTCGCCATCATCTTCGTAGACGACTACAGCAGAA TGCGCAAAGTCTATACCTTGCGACAAAAGTCGGGGGCGCTATGGACCCTG ACGCAATTCGAGAGGGTCGTAGCGAGGGAAAACGGTTTGCAGATTAAGCG CCTTCGGTCGGATGAGGGAGGAGAATATACTGGGAAGCGTTTTAGGCAAT TCTGCGCAGAAAATGGCACCAAGCAGGAGTTCTCTGCCGCTTACACACCG CAACAAATCGATGTCGCGGCGCGCAGCTGGCGCAGCATTTTCGAGATGGC AATAGCCAACATGATCACCGTCAATATGGGTCGTCGATATTGGGCGGAAG CGGTGCGCTTGGCAGTGTACTGCCTAAATCGCGCCCCGATGCGACCGCAC AACGGAGGAACGCCGTACGAAAAATGGCACGGCGAGACACCAAAGTTGGA CCACCTTCGCGTCTTCGGCTGCACAGCGTATGTTATGTTCCAGTCGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig30343:19..567-

>mRNA_H-paniculata_contig30343.8225.1 ID=mRNA_H-paniculata_contig30343.8225.1|Name=mRNA_H-paniculata_contig30343.8225.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=888bp|location=Sequence derived from alignment at H-paniculata_contig30343:19..567- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCCGTTGGAGCTGGTGCACACCGACAGAGCCGGGCCGGTGGACAAGTC
CTTCGGAGGATGTCGCTTCGCCATCATCTTCGTAGACGACTACAGCAGAA
TGCGCAAAGTCTATACCTTGCGACAAAAGTCGGGGGCGCTATGGACCCTG
ACGCAATTCGAGAGGGTCGAGCCGTTGGAGCTGGTGCACACCGACAGAGC
CGGGCCGGTGGACAAGTCCTTCGGAGGATGTCGCTTCGCCATCATCTTCG
TAGACGACTACAGCAGAATGCGCAAAGTCTATACCTTGCGACAAAAGTCG
GGGGCGCTATGGACCCTGACGCAATTCGAGAGGGTCCAGGAGTTCTCTGC
CGCTTACACACCGCAACAAATCGATGTCGCGGCGCGCAGCTGGCGCAGCA
TTTTCGAGATGGCAATAGCCAACATGATCACCGTCAATATGGGTCGTCGA
TATTGGGCGGAAGCGGTGCGCTTGGCAGTGTACTGCCTAAATCGCGCCCC
GATGCGACCGCACAACGGAGGAACGCCGTACGAAAAATGGCACGGCGAGA
CACCAAAGTTGGACCACCTTCGCGTCTTCGGCTGCACAGCGTATGTTATG
TTCCAGTCGTAGCAGGAGTTCTCTGCCGCTTACACACCGCAACAAATCGA
TGTCGCGGCGCGCAGCTGGCGCAGCATTTTCGAGATGGCAATAGCCAACA
TGATCACCGTCAATATGGGTCGTCGATATTGGGCGGAAGCGGTGCGCTTG
GCAGTGTACTGCCTAAATCGCGCCCCGATGCGACCGCACAACGGAGGAAC
GCCGTACGAAAAATGGCACGGCGAGACACCAAAGTTGGACCACCTTCGCG
TCTTCGGCTGCACAGCGTATGTTATGTTCCAGTCGTAG
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