mRNA_H-paniculata_contig3031.8220.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3031.8220.1 vs. uniprot
Match: D7G4Q8_ECTSI (Geranylgeranyltransferase type 1 beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Q8_ECTSI) HSP 1 Score: 138 bits (348), Expect = 8.910e-35 Identity = 87/195 (44.62%), Postives = 105/195 (53.85%), Query Frame = 2
Query: 125 VDLNWDAHAGLFLRSLVGPGMPKQYTGADTSRVTLAYFCVVGLDLLGKLNTCSKAHREAVRDWVLAQQVVSTGPGRPGENERRCGFRGGPYTVNRSNLDEQTRVRAGSQERKTCDLQCAEKTDEAGAASYSQTPSLDNEALAVDEGIQFPYMDEGHLAMTYSALATLSTLGDDLAS-VDSEATVRAIAALQREDG 706
+ +WD H G F RSL+ PG+P+QYT ADT R TLAYFCV GLDL+GKL++C++A R V+ WVLAQQV G + RR GFRGGP+ V A SQ D D G EG+LA TYSALATL L DL + VDS+A VRA+ +LQREDG
Sbjct: 1 MGFDWDKHTGFFHRSLLNPGLPRQYTTADTQRTTLAYFCVTGLDLIGKLDSCTEAERATVKRWVLAQQVA-------GGDWRRRGFRGGPFGV---------------------------------VAEPSQRNGED------DAG-------EGNLAATYSALATLVALDVDLTTGVDSDAIVRALGSLQREDG 142
BLAST of mRNA_H-paniculata_contig3031.8220.1 vs. uniprot
Match: A0A7S2WN64_9STRA (Geranylgeranyl transferase type-1 subunit beta n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WN64_9STRA) HSP 1 Score: 101 bits (252), Expect = 5.960e-21 Identity = 64/174 (36.78%), Postives = 82/174 (47.13%), Query Frame = 2
Query: 185 MPKQYTGADTSRVTLAYFCVVGLDLLGKLNTCSKAHREAVRDWVLAQQVVSTGPGRPGENERRCGFRGGPYTVNRSNLDEQTRVRAGSQERKTCDLQCAEKTDEAGAASYSQTPSLDNEALAVDEGIQFPYMDEGHLAMTYSALATLSTLGDDLASVDSEATVRAIAALQREDG 706
+P YTG DTSR++L YF ++GLD+LG L + R+ V DWV Q+ P R CGFRGGP+ + P + AV E D GH+AMTY+ALA L TLGDDLA V + ++A+AALQREDG
Sbjct: 29 LPHHYTGLDTSRMSLLYFGIIGLDMLGALEEVLGSRRQQVVDWVYNCQI----PPRAAFQPAHCGFRGGPFL------------------------------------GHLYDPDHEGAEYAVSE------YDSGHIAMTYTALAVLLTLGDDLARVHTADIIQAVAALQREDG 156
BLAST of mRNA_H-paniculata_contig3031.8220.1 vs. uniprot
Match: A0A7S3ANB8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ANB8_9EUKA) HSP 1 Score: 93.2 bits (230), Expect = 4.510e-18 Identity = 66/203 (32.51%), Postives = 90/203 (44.33%), Query Frame = 2
Query: 134 NWDAHAGLFLRSLVGPGMPKQYTGADTSRVTLAYFCVVGLDLLGKLNTCSKAHREAVRDWVLAQQVVSTGPGRPGENERRC------------GFRGGPYTVNRSNLDEQTRVRAGSQERKTCDLQCAEKTDEAGAASYSQTPSLDNEALAVDEGIQFPYMDEGHLAMTYSALATLSTLGDDLASVDSEATVRAIAALQREDG 706
N H FL+ L +P+ YT DT+R+T+ YFCV GLD+LG ++ K + + WV AQQV+ T PG P + C GFRGGP+ + AG S S+ D GH+AM+Y+ALA L+ LGDDLA+VD A +R + +LQ G
Sbjct: 23 NVGLHVKYFLKCL--DVLPQPYTSLDTNRLTVVYFCVAGLDVLGAMD---KVDAQRIIRWVYAQQVLPTTPGAPAAGDEACHSSTGFREGLPGGFRGGPFLGG----------------------------EFAGRPSNSE-------------------FDGGHIAMSYTALALLAMLGDDLAAVDRPAVLRLVRSLQGPTG 173
BLAST of mRNA_H-paniculata_contig3031.8220.1 vs. uniprot
Match: UPI001129166A (geranylgeranyl transferase type-1 subunit beta isoform X5 n=1 Tax=Rhinatrema bivittatum TaxID=194408 RepID=UPI001129166A) HSP 1 Score: 92.8 bits (229), Expect = 6.280e-18 Identity = 78/234 (33.33%), Postives = 113/234 (48.29%), Query Frame = 2
Query: 140 DAHAGLFLRSLVGPGMPKQYTGADTSRVTLAYFCVVGLDLLGKLNTCSKAHREAVRDWVLAQQVVSTGPGRPGENERRCGFRGG-----PYTVNRSNLDEQTRVRAGSQERKTCDLQCAEKTDEAGAASYSQTPSLDNEAL--AVDEGIQFPYMDEGHLAMTYSALATLSTLGDDLASVDSEATVRAIAALQREDGRCYWRAREGKETGQHECLASSWCEHRYCKCGRFENRHG 820
+ H F R L +P++Y+ +TSR+T+A+F + GLD+L L+ +KA + +W+ + QV+ T N RCGFRG P+ ++S D +T + GSQ QC + ASY + + GI PY D GH+AMTY+AL++L LGDDL+ V EA + + ALQ EDG + EG E +S C C N G
Sbjct: 19 ERHVRFFQRCL--QVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKAD---IIEWIYSLQVLPT---EDNSNLNRCGFRGSSYLGMPFNPSKSAQDAETEL--GSQHGYPS-WQCPK-------ASYIPCNHITSHLGKGVKGPGILHPY-DSGHIAMTYTALSSLIILGDDLSRVYVEACLAGLRALQLEDGS-FCAVPEGSENDMRFVYCAS------CICYMLNNWSG 226
BLAST of mRNA_H-paniculata_contig3031.8220.1 vs. uniprot
Match: UPI001B8891F4 (geranylgeranyl transferase type-1 subunit beta-like isoform X1 n=2 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B8891F4) HSP 1 Score: 90.5 bits (223), Expect = 5.690e-17 Identity = 60/193 (31.09%), Postives = 90/193 (46.63%), Query Frame = 2
Query: 128 DLNWDAHAGLFLRSLVGPGMPKQYTGADTSRVTLAYFCVVGLDLLGKLNTCSKAHREAVRDWVLAQQVVSTGPGRPGENERRCGFRGGPYTVNRSNLDEQTRVRAGSQERKTCDLQCAEKTDEAGAASYSQTPSLDNEALAVDEGIQFPYMDEGHLAMTYSALATLSTLGDDLASVDSEATVRAIAALQREDG 706
D D H F+R+L +P + DT+R+T+A+F + GLD+LG +N + H++ + DW+ + QV+ P G N ++CGFRG + +S P E L PY D H+AMTY+ALA+L LGDD + VD A V + ALQ+++G
Sbjct: 5 DFLRDKHVKFFIRTL--RVLPSSLSSLDTNRMTVAFFALSGLDVLGAINVLEEEHKQMI-DWIYSLQVL---PHASGSNRQQCGFRG------------------------------------SSTLGHSYIPETAREKL-------IPY-DSSHIAMTYTALASLLILGDDFSRVDRMAIVDGLGALQQDNG 147
BLAST of mRNA_H-paniculata_contig3031.8220.1 vs. uniprot
Match: A0A433DGS2_9FUNG (Geranylgeranyl transferase type-1 subunit beta n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433DGS2_9FUNG) HSP 1 Score: 89.0 bits (219), Expect = 2.470e-16 Identity = 65/194 (33.51%), Postives = 88/194 (45.36%), Query Frame = 2
Query: 128 DLNWDAHAGLFLRSLVGPGMPKQYTGADTSRVTLAYFCVVGLDLLGKLNT-CSKAHREAVRDWVLAQQVVSTGPGRPGENERRCGFRGGPYTVNRSNLDEQTRVRAGSQERKTCDLQCAEKTDEAGAASYSQTPSLDNEALAVDEGIQFPYMDEGHLAMTYSALATLSTLGDDLASVDSEATVRAIAALQREDG 706
D ++ H F RSL +P YT DTSR+TLA+FC+ GL+LLG L+ S A ++ DW+ AQQ++ P NE CGFRG +S+ P N + D G+LA TYSALA L LGDDL+ V+ +A V + LQ++DG
Sbjct: 28 DFSFKKHVAYFKRSL--SMLPYNYTETDTSRMTLAFFCLSGLELLGVLDEEISAADKQDYVDWIYAQQILPD-TADPSLNELHCGFRG---------------------------------------SSWPGRPFEPNATHTT-----YQSYDSGNLANTYSALANLILLGDDLSRVNRDAIVNTMRHLQQKDG 174
BLAST of mRNA_H-paniculata_contig3031.8220.1 vs. uniprot
Match: A0A433Q939_9FUNG (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433Q939_9FUNG) HSP 1 Score: 89.0 bits (219), Expect = 3.340e-16 Identity = 65/194 (33.51%), Postives = 88/194 (45.36%), Query Frame = 2
Query: 128 DLNWDAHAGLFLRSLVGPGMPKQYTGADTSRVTLAYFCVVGLDLLGKLNT-CSKAHREAVRDWVLAQQVVSTGPGRPGENERRCGFRGGPYTVNRSNLDEQTRVRAGSQERKTCDLQCAEKTDEAGAASYSQTPSLDNEALAVDEGIQFPYMDEGHLAMTYSALATLSTLGDDLASVDSEATVRAIAALQREDG 706
D ++ H F RSL +P YT DTSR+TLA+FC+ GL+LLG L+ S A ++ DW+ AQQ++ P NE CGFRG +S+ P N + D G+LA TYSALA L LGDDL+ V+ +A V + LQ++DG
Sbjct: 28 DFSFKKHVAYFKRSL--SMLPYNYTETDTSRMTLAFFCLSGLELLGVLDEEISAADKQDYVDWIYAQQILPD-TADPSLNELHCGFRG---------------------------------------SSWPGRPFEPNATHTT-----YQSYDSGNLANTYSALANLILLGDDLSRVNRDAIVNTMRHLQQKDG 174
BLAST of mRNA_H-paniculata_contig3031.8220.1 vs. uniprot
Match: A0A0M0JLL5_9EUKA (Geranylgeranyl transferase type-1 subunit beta n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JLL5_9EUKA) HSP 1 Score: 89.0 bits (219), Expect = 3.360e-16 Identity = 69/192 (35.94%), Postives = 94/192 (48.96%), Query Frame = 2
Query: 131 LNWDAHAGLFLRSLVGPGMPKQYTGADTSRVTLAYFCVVGLDLLGKLNTCSKAHREAVRDWVLAQQVVSTGPGRPGENERRCGFRGGPYTVNRSNLDEQTRVRAGSQERKTCDLQCAEKTDEAGAASYSQTPSLDNEALAVDEGIQFPYMDEGHLAMTYSALATLSTLGDDLASVDSEATVRAIAALQREDG 706
L+ AHA FL+ L +P+ Y+ DT+R+T+AYFC+ GLD+LG L+ + + AV +WV AQQ+ P P + GFRG Y L C AGAA + + + D GHLAMTY+ALA L+ LGDDL+ VD AT+R + LQ+ DG
Sbjct: 8 LHHAAHAKYFLKLL--ETLPEPYSSLDTNRLTVAYFCISGLDILGALD---QVNATAVINWVYAQQL-RVPPDAPAD--WTGGFRGAGY------------------------LGCPF----AGAAGAAPSSAFDT----------------GHLAMTYTALAILTILGDDLSRVDRAATLRHVRGLQQPDG 147
BLAST of mRNA_H-paniculata_contig3031.8220.1 vs. uniprot
Match: A0A6Q2WQC5_ESOLU (Geranylgeranyl transferase type-1 subunit beta n=4 Tax=Esox lucius TaxID=8010 RepID=A0A6Q2WQC5_ESOLU) HSP 1 Score: 88.2 bits (217), Expect = 5.280e-16 Identity = 68/197 (34.52%), Postives = 95/197 (48.22%), Query Frame = 2
Query: 125 VDLNWDAHAGLFLRSLVGPGMPKQYTGADTSRVTLAYFCVVGLDLLGKLNTCSKAHREAVRDWVLAQQVVSTGPGRPGENERRCGFRGGPYTVNRSNLDEQTRVRAGSQERKTCDLQCAEKTDEAGAASYSQTPSLDNEALAVDEGIQFPYMDEGHLAMTYSALATLSTLGDDLASVDSEATVRAIAALQREDGRCY 715
+D D H F R L +P++Y+ +TSR+T+ +F + GLD+L L+ K ++ +WV + QV+ P N RCGFRG + N E A Q D+ T A PS+ G+ PY D GH+AMTY+ LA+L LGDDL V+ EA + + ALQ EDG Y
Sbjct: 14 IDFLKDRHVRFFQRCL--QVLPERYSSLETSRLTIVFFALSGLDVLDSLDVIDKP---SLIEWVYSLQVL---PIEDQSNLGRCGFRGSSHIGVPYNTSEVFFKPAHVQSPCLSDILVDWLTPSVQARRL--IPSV---LSPQGPGVSHPY-DSGHVAMTYTGLASLIILGDDLGRVNKEACLMGLKALQLEDGSFY 196
BLAST of mRNA_H-paniculata_contig3031.8220.1 vs. uniprot
Match: UPI001EAF702B (geranylgeranyl transferase type-1 subunit beta-like isoform X2 n=1 Tax=Oncorhynchus gorbuscha TaxID=8017 RepID=UPI001EAF702B) HSP 1 Score: 86.7 bits (213), Expect = 5.960e-16 Identity = 62/197 (31.47%), Postives = 87/197 (44.16%), Query Frame = 2
Query: 125 VDLNWDAHAGLFLRSLVGPGMPKQYTGADTSRVTLAYFCVVGLDLLGKLNTCSKAHREAVRDWVLAQQVVSTGPGRPGENERRCGFRGGPYTVNRSNLDEQTRVRAGSQERKTCDLQCAEKTDEAGAASYSQTPSLDNEALAVDEGIQFPYMDEGHLAMTYSALATLSTLGDDLASVDSEATVRAIAALQREDGRCY 715
+D D H F R L +P++Y+ +TSR+T+ +F + GLD+L LN K ++ +WV + QV+ T N RCGFRG + YS + G+ PY D GH+AMTY+ LA L LGDDL+ V+ EA + + ALQ EDG Y
Sbjct: 14 IDFLKDRHVRFFQRCL--QVLPERYSSLETSRLTIVFFALSGLDVLDSLNVIDKP---SLIEWVYSLQVIPT---EDQSNLGRCGFRGSSHI----------------------------------GVPYSTSKG---------PGVSHPY-DSGHVAMTYTGLACLVLLGDDLSRVNKEACLMGLKALQLEDGSFY 158 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3031.8220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3031.8220.1 >prot_H-paniculata_contig3031.8220.1 ID=prot_H-paniculata_contig3031.8220.1|Name=mRNA_H-paniculata_contig3031.8220.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=237bp MVDLNWDAHAGLFLRSLVGPGMPKQYTGADTSRVTLAYFCVVGLDLLGKLback to top mRNA from alignment at H-paniculata_contig3031:10297..19245+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3031.8220.1 ID=mRNA_H-paniculata_contig3031.8220.1|Name=mRNA_H-paniculata_contig3031.8220.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8949bp|location=Sequence derived from alignment at H-paniculata_contig3031:10297..19245+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3031:10297..19245+ >mRNA_H-paniculata_contig3031.8220.1 ID=mRNA_H-paniculata_contig3031.8220.1|Name=mRNA_H-paniculata_contig3031.8220.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1422bp|location=Sequence derived from alignment at H-paniculata_contig3031:10297..19245+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |