mRNA_H-paniculata_contig303.8217.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig303.8217.1
Unique NamemRNA_H-paniculata_contig303.8217.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig303.8217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig303contigH-paniculata_contig303:40988..42060 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1073
Cds size549
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig303.8217.1prot_H-paniculata_contig303.8217.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig303 41494..42042 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929930.8217134-UTR-H-paniculata_contig303:40987..414931622929930.8217134-UTR-H-paniculata_contig303:40987..41493Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig303 40988..41493 +
1691481074.4664724-UTR-H-paniculata_contig303:40987..414931691481074.4664724-UTR-H-paniculata_contig303:40987..41493Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig303 40988..41493 +
1622929930.8851144-UTR-H-paniculata_contig303:42042..420601622929930.8851144-UTR-H-paniculata_contig303:42042..42060Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig303 42043..42060 +
1691481074.48356-UTR-H-paniculata_contig303:42042..420601691481074.48356-UTR-H-paniculata_contig303:42042..42060Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig303 42043..42060 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929930.8692842-CDS-H-paniculata_contig303:41493..420421622929930.8692842-CDS-H-paniculata_contig303:41493..42042Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig303 41494..42042 +
1691481074.4751341-CDS-H-paniculata_contig303:41493..420421691481074.4751341-CDS-H-paniculata_contig303:41493..42042Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig303 41494..42042 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig303.8217.1

>prot_H-paniculata_contig303.8217.1 ID=prot_H-paniculata_contig303.8217.1|Name=mRNA_H-paniculata_contig303.8217.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=183bp
MFTQKEISLTEYPKNRVVLPQLLREPGPSKESASQEESVGCTVLGGASRM
DAIYTVSAQNADWPLYPSRVIFFFKRVSRYMSERQRGGRREREKERERKR
ARQKIKYRMCMFSKVFAFFPPLPPGFPDGVLFWTHVAAPTIFFAIFRVFC
VCLCVFLLMLVSCRNRAGLWTRERDNLWSRGE*
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mRNA from alignment at H-paniculata_contig303:40988..42060+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig303.8217.1 ID=mRNA_H-paniculata_contig303.8217.1|Name=mRNA_H-paniculata_contig303.8217.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1073bp|location=Sequence derived from alignment at H-paniculata_contig303:40988..42060+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAAGGGGGAGGGAAGAGTAAGGAACAGGTTTTGCCGAGAACTCGGAGAT
TTGACCGATGTGTGTGTGTGTATGTTTTCGTTGTGTTTTTTTGGGAAACT
TCGACGTGCTCGTGAGCTGAAAAACTGTTGGCTTTTTTCGTGAAACCGAA
TCACACTTTTTCTGTGGTCGGACGTTTACGGTGTTGATACTGGGCTGTTG
TGTGGTGTGGTGTTGGTATCGTGTATGTATGTATGTGCCCCAAACCTTTT
GATTGAGGGGTGTTTACGACTACTATACCATACTCTACCCGTCGAGCTCG
GAGAACATTACATTTTCACAGGCTGTTTTCTGTATGTTTTTGTTTTGCTT
ATACATATATTTCTATATGTAATATTTTGGTGTTTTCTTTCCTCTTTCTT
TTATTAGAGTAAAAAAAAACCGACAAGTGTTGTTGCATGTTTGTGCCGTA
CGTTTTTCCCCCAGGCGTGTTGTGCGTTTTTCCAACGTCCACACTGGTGG
TGTTCTATGTTTACCCAGAAAGAGATTTCCCTTACTGAATATCCCAAAAA
TAGAGTTGTTTTACCTCAGCTATTACGTGAGCCTGGTCCGTCGAAGGAGA
GCGCTAGTCAAGAAGAGAGTGTCGGCTGTACTGTGCTTGGAGGCGCCAGC
CGCATGGACGCAATATATACAGTTTCCGCGCAAAATGCTGACTGGCCATT
ATATCCATCGCGTGTCATATTTTTTTTCAAAAGGGTTAGTAGGTACATGA
GTGAGAGACAGAGAGGGGGACGGAGAGAGAGAGAGAAAGAGAGAGAGCGC
AAGCGCGCGAGACAGAAAATAAAATATCGTATGTGTATGTTTTCCAAAGT
TTTTGCTTTCTTCCCCCCCCTCCCCCCTGGTTTCCCGGATGGGGTGCTTT
TTTGGACGCACGTAGCCGCGCCGACGATTTTTTTCGCCATTTTTCGCGTT
TTTTGTGTGTGTTTGTGTGTCTTCCTCCTGATGCTCGTTTCATGCCGAAA
TCGAGCAGGCTTGTGGACGAGGGAGAGGGACAATTTGTGGTCGAGAGGAG
AGTGAGTTGACGGGCGGGTAGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig303:40988..42060+

>mRNA_H-paniculata_contig303.8217.1 ID=mRNA_H-paniculata_contig303.8217.1|Name=mRNA_H-paniculata_contig303.8217.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1098bp|location=Sequence derived from alignment at H-paniculata_contig303:40988..42060+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTACCCAGAAAGAGATTTCCCTTACTGAATATCCCAAAAATAGAGT
TGTTTTACCTCAGCTATTACGTGAGCCTGGTCCGTCGAAGGAGAGCGCTA
GTCAAGAAGAGAGTGTCGGCTGTACTGTGCTTGGAGGCGCCAGCCGCATG
GACGCAATATATACAGTTTCCGCGCAAAATGCTGACTGGCCATTATATCC
ATCGCGTGTCATATTTTTTTTCAAAAGGGTTAGTAGGTACATGAGTGAGA
GACAGAGAGGGGGACGGAGAGAGAGAGAGAAAGAGAGAGAGCGCAAGCGC
GCGAGACAGAAAATAAAATATCGTATGTGTATGTTTTCCAAAGTTTTTGC
TTTCTTCCCCCCCCTCCCCCCTGGTTTCCCGGATGGGGTGCTTTTTTGGA
CGCACGTAGCCGCGCCGACGATTTTTTTCGCCATTTTTCGCGTTTTTTGT
GTGTGTTTGTGTGTCTTCCTCCTGATGCTCGTTTCATGCCGAAATCGAGC
AGGCTTGTGGACGAGGGAGAGGGACAATTTGTGGTCGAGAGGAGAGTGAA
TGTTTACCCAGAAAGAGATTTCCCTTACTGAATATCCCAAAAATAGAGTT
GTTTTACCTCAGCTATTACGTGAGCCTGGTCCGTCGAAGGAGAGCGCTAG
TCAAGAAGAGAGTGTCGGCTGTACTGTGCTTGGAGGCGCCAGCCGCATGG
ACGCAATATATACAGTTTCCGCGCAAAATGCTGACTGGCCATTATATCCA
TCGCGTGTCATATTTTTTTTCAAAAGGGTTAGTAGGTACATGAGTGAGAG
ACAGAGAGGGGGACGGAGAGAGAGAGAGAAAGAGAGAGAGCGCAAGCGCG
CGAGACAGAAAATAAAATATCGTATGTGTATGTTTTCCAAAGTTTTTGCT
TTCTTCCCCCCCCTCCCCCCTGGTTTCCCGGATGGGGTGCTTTTTTGGAC
GCACGTAGCCGCGCCGACGATTTTTTTCGCCATTTTTCGCGTTTTTTGTG
TGTGTTTGTGTGTCTTCCTCCTGATGCTCGTTTCATGCCGAAATCGAGCA
GGCTTGTGGACGAGGGAGAGGGACAATTTGTGGTCGAGAGGAGAGTGA
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