mRNA_H-paniculata_contig3024.8198.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3024.8198.1
Unique NamemRNA_H-paniculata_contig3024.8198.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig3024.8198.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA)

HSP 1 Score: 279 bits (714), Expect = 8.400e-84
Identity = 159/417 (38.13%), Postives = 239/417 (57.31%), Query Frame = 1
Query:    1 SPIARTLTLRTVFSLVAKHDSELEGMDVDAAYLNAPVEEELFVKLPPET*H--------LCAACVSMYGLKQSGRNWNNTLDDFIVGIGL*PSTTDPCLYFSRDEGGETNILVAVYVDDLVIAGR-REKVDEFKHNTSRHFRMEDLGSLSRVLGIGVRRDRPNDAITISQGSYIREVLKRYGFDECRSGPTPVEGEVKILAPNSKRSGNPSEYRGMVGSLMYASTGSRPDMAYAVYQAARRMEDPCRKDSSRCKRIFRCLSTVPDLGITLGGKNNGH-GLEGFVDADWAEDFEDRKSTTGYVFTLNGG----AISWFSRK*QPATWSSSEAAYVAAGKARNEMVYLGDLLGSIGFGCRGGSTTLFEDNKSAINLGKRSGAHCRTKHIGVRWHGIQEWVRKGILALKYVQTGNQLPDI 1209
            +P+A   T+R V +L    D EL+ MDVD AYL + +EE++++K PP            +C    S+YGLKQSGRNW+  +D +  G GL PS  DPCLY      GE  ++V +YVDDL+I    R   D+FK + SR F M+DL  L  +LG+G++R+R N  + ISQ  YI  +L ++G  +C+S  TP+EG +  +     +  N  EY  +VGSL+YA+  +RPD+A+AV    + ++   ++     KR+ R L    D+G+   G + G   L G+ DAD+A D ++R+ST+GY FTL+ G     I W +++      SS+E+  ++A  A    VY+  LL  +GF  +   T + EDN++ I +G     H RTKHI VR+H ++E V    + L Y+ T +QL DI
Sbjct:  279 APVASMTTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPPGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCLYVKFASSGEILVIV-LYVDDLIIGSNSRTMTDKFKQDISREFSMKDLKELDWILGMGIKRNRENRTMEISQTGYIGMMLNKFGMADCKSVLTPMEGTLTKMDGKDVKPDN--EYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNKEHWIAAKRVLRYLKGTRDVGLKYTGNSTGSFTLVGYADADYAGDKDNRRSTSGYTFTLSHGDDVNTIDWKAKQQDVVALSSAESELISACSATQNAVYIRQLLMDLGFK-QDEPTVIMEDNQACIAMGNNPITHKRTKHIDVRYHFVREKVESKEVELVYIPTQHQLADI 691          
BLAST of mRNA_H-paniculata_contig3024.8198.1 vs. uniprot
Match: A0A6G0HFF8_LARCR (Copia protein Gag-int-pol protein Copia VLP protein Copia protease n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0HFF8_LARCR)

HSP 1 Score: 266 bits (680), Expect = 7.250e-81
Identity = 154/411 (37.47%), Postives = 232/411 (56.45%), Query Frame = 1
Query:    1 SPIARTLTLRTVFSLVAKHDSELEGMDVDAAYLNAPVEEELFVKLP-----PET*HL-CAACVSMYGLKQSGRNWNNTLDDFIVGIGL*PSTTDPCLYFSRDEGGETNILVAVYVDDLV-IAGRREKVDEFKHNTSRHFRMEDLGSLSRVLGIGVRRDRPNDAITISQGSYIREVLKRYGFDECRSGPTPVEGEVKILAPNSKRSG-NPSEYRGMVGSLMYASTGSRPDMAYAVYQAARRMEDPCRKDSSRCKRIFRCLSTVPDLGITLGGKNNGHGLEGFVDADWAEDFEDRKSTTGYVFTLNGGAISWFSRK*QPATWSSSEAAYVAAGKARNEMVYLGDLLGSIGFGCRGGSTTLFEDNKSAINLGKRSGAHCRTKHIGVRWHGIQEWVRKGILALKYVQTGNQLPDI 1209
            SP+ R  ++RT+ S   +++  +  MDV  A+LN  +EEE++++ P     P   HL C    S+YGLKQS R W+ T  + +  IG   ST+DPC++    +  E   ++AVYVDDL+ I    E + E K    + ++M+D+G LS +LGI V +D+ N+++ + Q  YI  VL++YG D+     TP +  VK+   +   +  NP  Y+ +VGSL+YA+  +RPD+A AV   ++    P     +  KRI R L    +L +    ++    L GF DADWA D +DR+STTG +F L GGA+SW S+K      S++EA YVA  +A  E  +L  LL  +G       T + EDN+ AI + K    H RTKHI +R+H I+E V+ G + L+Y  T +   DI
Sbjct:   83 SPVVRFSSIRTLLSFAVQNNLHVHQMDVVTAFLNGHLEEEIYMEQPDGYIKPGQEHLVCKLKKSIYGLKQSPRCWSKTFTESMKDIGFNQSTSDPCVFVRARQELE---ILAVYVDDLILITESLESMTELKVALKKKYKMKDMGELSYILGISVIQDKTNNSVYLHQKHYIEAVLQKYGMDKANPVTTPADANVKLQKDDGVSNPVNPGTYQSIVGSLLYAAMATRPDIAQAVSAVSKFNAKPNTAHMTAVKRILRYLKGTINLALKYQ-RSESETLLGFSDADWAGDQDDRRSTTGNIFLLGGGAVSWLSKKQNTVALSTAEAEYVALSQAAQECTWLTRLLSDLGMDAT--PTVILEDNQGAIAIAKNPVDHSRTKHIDIRYHYIRECVQNGQIQLQYCPTEDMKADI 487          
BLAST of mRNA_H-paniculata_contig3024.8198.1 vs. uniprot
Match: A0A7D9KES8_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9KES8_PARCT)

HSP 1 Score: 271 bits (692), Expect = 1.020e-80
Identity = 159/412 (38.59%), Postives = 236/412 (57.28%), Query Frame = 1
Query:    1 SPIARTLTLRTVFSLVAKHDSELEGMDVDAAYLNAPVEEELFVK-----LPPET*HL-CAACVSMYGLKQSGRNWNNTLDDFIVGIGL*PSTTDPCLYFSRDEGGETNILVAVYVDDLVIAGRRE-KVDEFKHNTSRHFRMEDLGSLSRVLGIGVRRDRPNDAITISQGSYIREVLKRYGFDECRSGPTPVEGEVKI--LAPNSKRSGNPSEYRGMVGSLMYASTGSRPDMAYAVYQAARRMEDPCRKDSSRCKRIFRCLSTVPDLGITLGGKNNGHGLEGFVDADWAEDFEDRKSTTGYVFTLNGGAISWFSRK*QPATWSSSEAAYVAAGKARNEMVYLGDLLGSIGFGCRGGSTTLFEDNKSAINLGKRSGAHCRTKHIGVRWHGIQEWVRKGILALKYVQTGNQLPDI 1209
            SP+AR  ++RTV +L A+H  +L  MDV  A+LN  ++EE+++K     +     HL C    S+YGLKQS R WN+ LD  +  +G   +T DPC+Y  ++EGGE   ++AVYVDD+++AG+ + K++E K   +  F+M+D+G L   LG+ V     +  I I Q +Y + VL+R+G +  +   TPV    K+   A +S+R  +   Y+  VG L+Y ST +RPD+AYAV   AR   DP  +     KRI R L+   D+G+   G        G+ DADWA D +DRKST+GYVF ++  AISW S+K      S++EA Y+A   A  E V+L  LL  +     G    + EDN++AI + K +  H R KHI +++H I+E V    + L+Y  T   + DI
Sbjct:   67 SPVARFESVRTVIALAAQHGLKLHQMDVTTAFLNGDLKEEVYMKQTEGFIEKGKEHLVCRLRRSIYGLKQSPRCWNSVLDRKLKNMGFVQTTGDPCIYV-KEEGGEI-FIIAVYVDDILLAGKNDQKINEVKQALAEQFQMKDMGQLHYFLGVKVIPKPDSKEIWIGQEAYTKSVLERFGMESSKPASTPVNPGTKLKKAADDSQRV-DQVNYQCAVGHLLYLSTKTRPDIAYAVSDVARFSADPTEEHWIAVKRIMRYLNGTRDMGLLYDGSKTTTSCVGYSDADWAGDLDDRKSTSGYVFQISNAAISWRSKKQSCVALSTAEAEYMALASATQEAVWLQQLLSDLKSKPTG-PMLILEDNQAAICMAKNAQYHGRAKHIDIKYHFIREHVASAAVKLEYCSTEEMIADI 474          
BLAST of mRNA_H-paniculata_contig3024.8198.1 vs. uniprot
Match: H3H4L3_PHYRM (Uncharacterized protein n=5 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H4L3_PHYRM)

HSP 1 Score: 277 bits (709), Expect = 3.460e-80
Identity = 154/419 (36.75%), Postives = 236/419 (56.32%), Query Frame = 1
Query:    1 SPIARTLTLRTVFSLVAKHDSELEGMDVDAAYLNAPVEEELFVKLP--------PET*HLCAACVSMYGLKQSGRNWNNTLDDFIVGIGL*PSTTDPCLYFSRDEGGETNILVAVYVDDLVIAGRREKV-DEFKHNTSRHFRMEDLGSLSRVLGIGVRRDRPNDAITISQGSYIREVLKRYGFDECRSGPTPVEGEVKILAPNSKRSGNPSE-------YRGMVGSLMYASTGSRPDMAYAVYQAARRMEDPCRKDSSRCKRIFRCLSTVPDLGITLGGKNNGHGLEGFVDADWAEDFEDRKSTTGYVFTLNGGAISWFSRK*QPATWSSSEAAYVAAGKARNEMVYLGDLLGSIGFGCRGGSTTLFEDNKSAINLGKRSGAHCRTKHIGVRWHGIQEWVRKGILALKYVQTGNQLPDI 1209
            +P+A+  ++R V SL AK+  +L  MDV  A+LN  ++E++++  P        P+  H+C    S+YGLKQS R WN T+DDF++ +G     +D C+Y  RD  G+  I VA+YVDDLV+A   +++ +  KH  S+ F M DLG L   LG+ ++ D  +  +T+ Q  +++ +L ++G  + +   TP +  +K L  N    G   E       YR  VG+LMY    +RPD+A AV   ++   DPC       KR+ R L   P  G+    + +  G+ G+ DADWA D E R+ST+GY F +NGG ISW S+K +    SS+EA Y+A  +A  E+V+L   L  +G      +  ++EDN+ +I L K    H RTKHI +R+H ++E V  G + L+YV T + L D+
Sbjct:  741 APVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGYVDEDHPD--HVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSSDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDHGSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLK-LTKNMCEGGCQHEDTMKNVPYRSAVGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEFS-REDSVGMCGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEVVWLKVFLCELGEMASDEAVKIYEDNQGSIALAKNPQFHKRTKHIDIRYHFVREKVEDGQVVLQYVSTTDMLADM 1153          
BLAST of mRNA_H-paniculata_contig3024.8198.1 vs. uniprot
Match: H3GB98_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB98_PHYRM)

HSP 1 Score: 260 bits (665), Expect = 1.490e-79
Identity = 146/394 (37.06%), Postives = 220/394 (55.84%), Query Frame = 1
Query:   76 MDVDAAYLNAPVEEELFVKLP--------PET*HLCAACVSMYGLKQSGRNWNNTLDDFIVGIGL*PSTTDPCLYFSRDEGGETNILVAVYVDDLVIAGRREKVDEF-KHNTSRHFRMEDLGSLSRVLGIGVRRDRPNDAITISQGSYIREVLKRYGFDECRSGPTPVEGEVKILAPNSKRSGNPSE-------YRGMVGSLMYASTGSRPDMAYAVYQAARRMEDPCRKDSSRCKRIFRCLSTVPDLGITLGGKNNGHGLEGFVDADWAEDFEDRKSTTGYVFTLNGGAISWFSRK*QPATWSSSEAAYVAAGKARNEMVYLGDLLGSIGFGCRGGSTTLFEDNKSAINLGKRSGAHCRTKHIGVRWHGIQEWVRKGILALKYVQTGNQLPDI 1209
            MDV  A+LN  ++E++++  P        P+  H+C    S+YGLKQS R WN T+DDF++ +G     +D C+Y  RD  G+  I VA+YVDDLV+A   +++ E  KH  S+ F M DLG L   LG+ ++  R +  +T+ Q  +++ +L ++G  + +   TP +  +K L  N    G   E       YR +VG+LMY    +RPD+A AV   ++   DPC       KR+ R L   P  G+    + +  G+ G+ DADWA D E R+ST+GY F +NGG ISW S+K +    SS+EA Y+A  +A  E V+L   L  +G      +  ++EDN+ +I L K    H RTKHI +R+H ++E V  G + L+YV T + L D+
Sbjct:    1 MDVKTAFLNGVLDEDIYMAQPDGYVDEDHPD--HVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLELTKHALSKRFEMTDLGELEYFLGMEIKNTRDSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLK-LTKNMCEGGCQHEDTMKNVPYRSVVGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEFS-REDSLGMCGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEAVWLKVFLCELGEMASDEAVKIYEDNQGSIALAKNPQFHKRTKHIDIRYHFVREKVEDGQVVLQYVSTTDMLADM 388          
BLAST of mRNA_H-paniculata_contig3024.8198.1 vs. uniprot
Match: W7T174_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T174_9STRA)

HSP 1 Score: 273 bits (699), Expect = 1.580e-79
Identity = 160/417 (38.37%), Postives = 236/417 (56.59%), Query Frame = 1
Query:    1 SPIARTLTLRTVFSLVAKHDSELEGMDVDAAYLNAPVEEELFVKLP-------PET*HL-CAACVSMYGLKQSGRNWNNTLDDFIVGIGL*PSTTDPCLYFSRDEGGETNILVAVYVDDLVIAGR-REKVDEFKHNTSRHFRMEDLGSLSRVLGIGVRRDRPNDAITISQGSYIREVLKRYGFDECRSGPTPVEGEVKILAPNSKRSGNPSEYRGMVGSLMYASTGSRPDMAYAVYQAARRMEDPCRKDSSRCKRIFRCLSTVPDLGITLGGKNNGH-GLEGFVDADWAEDFEDRKSTTGYVFTLNGG----AISWFSRK*QPATWSSSEAAYVAAGKARNEMVYLGDLLGSIGFGCRGGSTTLFEDNKSAINLGKRSGAHCRTKHIGVRWHGIQEWVRKGILALKYVQTGNQLPDI 1209
            +P+A   T+R V +L    D EL+ MDVD AYL + +EE++++K P       P    L C    S+YGLKQSGRNW+  +D +  G G  PS+ DPCLY      GE  ++V +YVDDL+IA   R   D+FK   SR F M+DL  L  +LG+ ++R+R    + ISQ  YI  +L ++G  +C+   TP+EG +  +  + K     SEY  +VGSL+YA+  +RPD+A+AV    + ++    +     KR+ R L    D+GI   G   G   L GF DAD+A D ++R+ST+GY FTL+ G     I W +++ +    SS+E+  ++A  A    VY+  LL  +GF  +   T + EDN++ I +G     H RTKHI VR+H ++E V    + L Y+ T +QL DI
Sbjct:  577 APVASMTTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPHGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEM-LVVVLYVDDLIIASNSRTMADKFKQAISREFSMKDLKELDWILGMAIKRNREKRIMEISQTGYIDMMLNKFGMTDCKPVLTPMEGTLTKM--DGKDVKPDSEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLRYLKGTRDVGIRYTGNTTGSFTLVGFADADYAGDKDNRRSTSGYAFTLSHGDDINTIDWKAKQQEVVALSSAESELISACSATQSAVYIRQLLTDLGFK-QDEPTVIMEDNQACIAMGNNPITHKRTKHIDVRYHFVREKVESKEVELVYIPTQHQLADI 989          
BLAST of mRNA_H-paniculata_contig3024.8198.1 vs. uniprot
Match: W7TIM1_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIM1_9STRA)

HSP 1 Score: 273 bits (698), Expect = 1.660e-79
Identity = 157/417 (37.65%), Postives = 236/417 (56.59%), Query Frame = 1
Query:    1 SPIARTLTLRTVFSLVAKHDSELEGMDVDAAYLNAPVEEELFVKLPPET*H--------LCAACVSMYGLKQSGRNWNNTLDDFIVGIGL*PSTTDPCLYFSRDEGGETNILVAVYVDDLVIAGR-REKVDEFKHNTSRHFRMEDLGSLSRVLGIGVRRDRPNDAITISQGSYIREVLKRYGFDECRSGPTPVEGEVKILAPNSKRSGNPSEYRGMVGSLMYASTGSRPDMAYAVYQAARRMEDPCRKDSSRCKRIFRCLSTVPDLGITLGGKNNGH-GLEGFVDADWAEDFEDRKSTTGYVFTLNGG----AISWFSRK*QPATWSSSEAAYVAAGKARNEMVYLGDLLGSIGFGCRGGSTTLFEDNKSAINLGKRSGAHCRTKHIGVRWHGIQEWVRKGILALKYVQTGNQLPDI 1209
            +P+A   T+R + ++    D EL+ MDV+ AYL + +EE+++VK P             +C    S+YGLKQSGRNW+  +D +  G G  PS+ DPCLY      GE  ++V +YVDDL+I    RE VD+FK   SR F M+DL  L  +LG+ ++R+R    + ISQ +YI  VL ++G  +CR   TP+EG +  +     +  N  EY  +VGSL+YA+  +RPD+A+AV    + ++    +     KR+ R L    D+GI   G   G   L GF DAD+A D ++R+ST+GY FTL+ G     I W +++ +    SS+E+  ++A  A    VY+  LL  +GF  +   T + EDN++ I +G     H +TKHI VR+H ++E V    + L Y+ T +QL DI
Sbjct:  288 APVASITTIRLILAIACILDLELDNMDVETAYLQSDLEEKVYVKQPIGYEQYGLNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEMLVIV-LYVDDLIITSNSREMVDKFKQAISREFSMKDLKELDWILGMAIKRNREKRVMEISQTAYIDMVLNKFGMADCRPVLTPMEGTLTKMDGKDAKPDN--EYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLRYLKGTRDVGIRYTGNTTGSFTLVGFADADYAGDKDNRRSTSGYAFTLSHGDDINTIDWKAKQQEVVALSSAESELISACSATQSAVYIRQLLTDLGFK-QDEPTVIVEDNQACIAMGNNPITHKKTKHIDVRYHFVREKVESKEVELVYIPTQHQLADI 700          
BLAST of mRNA_H-paniculata_contig3024.8198.1 vs. uniprot
Match: H3GB17_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB17_PHYRM)

HSP 1 Score: 258 bits (660), Expect = 4.320e-79
Identity = 145/389 (37.28%), Postives = 217/389 (55.78%), Query Frame = 1
Query:   64 ELEGMDVDAAYLNAPVEEELFVKLPP------ET*HLCAACVSMYGLKQSGRNWNNTLDDFIVGIGL*PSTTDPCLYFSRDEGGETNILVAVYVDDLVIAGR-REKVDEFKHNTSRHFRMEDLGSLSRVLGIGVRRDRPNDAITISQGSYIREVLKRYGFDECRSGPTPVEGEVKILAPNSKRSGNPS-EYRGMVGSLMYASTGSRPDMAYAVYQAARRMEDPCRKDSSRCKRIFRCLSTVPDLGITLGGKNNGHGLEGFVDADWAEDFEDRKSTTGYVFTLNGGAISWFSRK*QPATWSSSEAAYVAAGKARNEMVYLGDLLGSIGFGCRGGSTTLFEDNKSAINLGKRSGAHCRTKHIGVRWHGIQEWVRKGILALKYVQTGNQLPD 1206
            E E +DVD A+L   VEEEL++  P            C    ++YG KQ+ R WN+ L+  + G G   S  DPC+Y  R +   +  ++ VYVDDL+I  R + ++ E K    R F +++LG L   LGI + R+R +  I ++Q +YI+ + +++G ++C++  TP +   K++ P       P   YR +VG+LMY +T +RPD+A AV + A+  E   +      KRI + L T  DLG+   G   G  L G+ DA WA D + R+STTGYVF LNG AISW S++      SS+EA Y+A   A  E V+L  LL  +G  C   +TT+F+DN+  I L K    H RTKHI +++H ++E V   ++ L+Y  T   + D
Sbjct:    2 EAENVDVDTAFLYGDVEEELYMDQPDGFEDQVNPTKKCLLMQALYGTKQAARQWNSKLNKHLEGQGFHRSAADPCVYVRRSDSKFS--IIIVYVDDLMIFSRTKAEIGEIKKALKREFSIKELGELKYCLGIEIHRNRDDKTIVMNQRAYIQRLAEKFGVEKCKAVHTPADSNSKLVKPAEDEVFVPRYPYRELVGALMYLATCTRPDIAQAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDLGLVFNGGTKGE-LIGYADASWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVA-ATTIFQDNQGCIALAKNPAYHSRTKHIDLKYHFLREKVEDKVIVLEYKPTDEMIAD 386          
BLAST of mRNA_H-paniculata_contig3024.8198.1 vs. uniprot
Match: A0A8K1FHK1_PYTOL (Uncharacterized protein n=3 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHK1_PYTOL)

HSP 1 Score: 274 bits (700), Expect = 1.540e-78
Identity = 153/418 (36.60%), Postives = 229/418 (54.78%), Query Frame = 1
Query:    1 SPIARTLTLRTVFSLVAKHDSELEGMDVDAAYLNAPVEEELFVKLP--------PET*HLCAACVSMYGLKQSGRNWNNTLDDFIVGIGL*PSTTDPCLYFSRDEGGETNILVAVYVDDLVIA-GRREKVDEFKHNTSRHFRMEDLGSLSRVLGIGVRRDRPNDAITISQGSYIREVLKRYGFDECRSGPTPVEGEVKILAPNSKRSGNPSE------YRGMVGSLMYASTGSRPDMAYAVYQAARRMEDPCRKDSSRCKRIFRCLSTVPDLGITLGGKNNGHGLEGFVDADWAEDFEDRKSTTGYVFTLNGGAISWFSRK*QPATWSSSEAAYVAAGKARNEMVYLGDLLGSIGFGCRGGSTTLFEDNKSAINLGKRSGAHCRTKHIGVRWHGIQEWVRKGILALKYVQTGNQLPDI 1209
            +P+A+  ++R + SL A++   L  MDV  A+LN  ++EE+++K P        P   H C    ++YGLKQS R WN T+D+F+  IG      D C+Y  R++     + V +YVDDL++A   ++ +   K   S  F M DLG L   LG+ V+RD  +  +++ Q  +++ VL ++G  +C+   TP +  +K+     +      E      YR  VG+LMY   G+RPD+A +V   ++   DPC       KR+ R L   P  GI   G ++G  L G+ DADWA D E R+ST+GYV  LNGG ISW S+K +    SS+EA Y+A  +A  E V+L   +  +G     G+ T+FEDN+ AI L K    H RTKHI +R+H ++E V  G + L+Y  T   L D+
Sbjct:  949 APVAKFTSIRIILSLAAQYKLVLHQMDVKTAFLNGLLDEEIYMKQPDGYIDPKYPN--HACKLKRALYGLKQSPRMWNQTIDEFMRKIGFTKCNMDHCVYVKRNDSA--TMFVVIYVDDLILACNNKDLLAATKRALSERFEMSDLGELKYCLGMEVKRDDKSGDVSMRQTKFVQSVLTKFGMQDCKPVKTPQDPGLKLTKSMCEGGCKHDETMKDVPYRNAVGALMYLMVGTRPDLAASVGTLSQFAADPCPTHWQALKRVLRYLQATPMHGICFSGSSDGE-LIGYSDADWAGDIETRRSTSGYVSVLNGGCISWRSKKQRTVALSSTEAEYMALSEATQEAVWLKSFMCELGEDSGNGALTVFEDNQGAIALAKNPEFHKRTKHIDIRYHFVREKVEDGQVVLEYCPTQEMLADL 1361          
BLAST of mRNA_H-paniculata_contig3024.8198.1 vs. uniprot
Match: H3H8J1_PHYRM (Integrase catalytic domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H8J1_PHYRM)

HSP 1 Score: 270 bits (689), Expect = 1.600e-78
Identity = 151/419 (36.04%), Postives = 232/419 (55.37%), Query Frame = 1
Query:    1 SPIARTLTLRTVFSLVAKHDSELEGMDVDAAYLNAPVEEELFVKLP--------PET*HLCAACVSMYGLKQSGRNWNNTLDDFIVGIGL*PSTTDPCLYFSRDEGGETNILVAVYVDDLVIAGRREKV-DEFKHNTSRHFRMEDLGSLSRVLGIGVRRDRPNDAITISQGSYIREVLKRYGFDECRSGPTPVEGEVKILAPNSKRSGNPSE-------YRGMVGSLMYASTGSRPDMAYAVYQAARRMEDPCRKDSSRCKRIFRCLSTVPDLGITLGGKNNGHGLEGFVDADWAEDFEDRKSTTGYVFTLNGGAISWFSRK*QPATWSSSEAAYVAAGKARNEMVYLGDLLGSIGFGCRGGSTTLFEDNKSAINLGKRSGAHCRTKHIGVRWHGIQEWVRKGILALKYVQTGNQLPDI 1209
            +P+ +  ++R V SL AK+  +L  MDV  A+LN  ++E++++  P        P+  H+C    S+YGLKQS R WN T+DDF++ +G     +D C+Y  RD  G+  I VA+YVDDLV+A   +++ +  KH  S+ F M DLG L   LG+ ++ D  +  + + Q  +++ +L ++G  + +   TP +  +K L  N    G   E       YR  VG+LMY    +RPD+A AV   ++   DPC       KR+ R L   P  G+    + +  G+ G+ DADWA D E R+ST+GY F +NGG ISW S+  +    SS+EA Y+A  +A  E V+L   L  +G      +  ++EDN+ +I L K    H RTKHI +R+H ++E V  G + L+YV T + L D+
Sbjct:  479 APVPKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGYVDEDHPD--HVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDPGSGKVMVRQTKFLKSILTKFGMQDSKPVKTPQDPGLK-LTKNMCEGGCQHEDTMKNVPYRSAVGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEFS-REDSLGMCGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKNQRTVALSSTEAEYMALSEATQEAVWLKVFLCELGEMAGDEAVKIYEDNQGSIALAKNPQFHKRTKHIDIRYHFVREKVEDGQVVLQYVSTTDMLADM 891          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3024.8198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7TJ26_9STRA8.400e-8438.13Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
A0A6G0HFF8_LARCR7.250e-8137.47Copia protein Gag-int-pol protein Copia VLP protei... [more]
A0A7D9KES8_PARCT1.020e-8038.59Retrovirus-related Pol poly from transposon TNT 1-... [more]
H3H4L3_PHYRM3.460e-8036.75Uncharacterized protein n=5 Tax=Phytophthora ramor... [more]
H3GB98_PHYRM1.490e-7937.06Reverse transcriptase Ty1/copia-type domain-contai... [more]
W7T174_9STRA1.580e-7938.37Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
W7TIM1_9STRA1.660e-7937.65Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
H3GB17_PHYRM4.320e-7937.28Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8K1FHK1_PYTOL1.540e-7836.60Uncharacterized protein n=3 Tax=Pythium oligandrum... [more]
H3H8J1_PHYRM1.600e-7836.04Integrase catalytic domain-containing protein n=2 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3024contigH-paniculata_contig3024:2118..3404 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.0
Seed ortholog evalue6.6e-29
Seed eggNOG ortholog164328.Phyra72549
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QHRW@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size1209
Cds size522
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929927.9675584-UTR-H-paniculata_contig3024:2117..24051622929927.9675584-UTR-H-paniculata_contig3024:2117..2405Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3024 2118..2405 -
1691481073.429312-UTR-H-paniculata_contig3024:2117..24051691481073.429312-UTR-H-paniculata_contig3024:2117..2405Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3024 2118..2405 -
1622929928.0577648-UTR-H-paniculata_contig3024:3005..34041622929928.0577648-UTR-H-paniculata_contig3024:3005..3404Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3024 3006..3404 -
1691481073.467384-UTR-H-paniculata_contig3024:3005..34041691481073.467384-UTR-H-paniculata_contig3024:3005..3404Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3024 3006..3404 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929928.0245054-CDS-H-paniculata_contig3024:2405..27451622929928.0245054-CDS-H-paniculata_contig3024:2405..2745Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3024 2406..2745 -
1691481073.446628-CDS-H-paniculata_contig3024:2405..27451691481073.446628-CDS-H-paniculata_contig3024:2405..2745Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3024 2406..2745 -
1622929928.0445294-CDS-H-paniculata_contig3024:2823..30051622929928.0445294-CDS-H-paniculata_contig3024:2823..3005Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3024 2824..3005 -
1691481073.4569252-CDS-H-paniculata_contig3024:2823..30051691481073.4569252-CDS-H-paniculata_contig3024:2823..3005Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3024 2824..3005 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3024.8198.1prot_H-paniculata_contig3024.8198.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3024 2406..3005 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3024.8198.1

>prot_H-paniculata_contig3024.8198.1 ID=prot_H-paniculata_contig3024.8198.1|Name=mRNA_H-paniculata_contig3024.8198.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=174bp
MEDLGSLSRVLGIGVRRDRPNDAITISQGSYIREVLKRYGFDECRSGPTP
VEGEVKILAPNSKRSGNPSEYRGMVGSLMYASTGSRPDMAYAVYQAARRM
EDPCRKDSSRCKRIFRCLSTVPDLGITLGGKNNGHGLEGFVDADWAEDFE
DRKSTTGYVFTLNGGAISWFSRK*
back to top

mRNA from alignment at H-paniculata_contig3024:2118..3404-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3024.8198.1 ID=mRNA_H-paniculata_contig3024.8198.1|Name=mRNA_H-paniculata_contig3024.8198.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1287bp|location=Sequence derived from alignment at H-paniculata_contig3024:2118..3404- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTCCAATAGCTCGCACATTGACATTGCGCACTGTATTCAGCCTGGTCGC CAAACATGATTCCGAACTAGAAGGCATGGACGTAGATGCGGCGTATTTGA ACGCCCCCGTAGAAGAAGAGCTGTTTGTGAAGCTACCCCCCGAGACATAG CATTTGTGCGCCGCCTGCGTAAGCATGTATGGCCTCAAGCAGAGCGGCCG AAACTGGAATAACACTCTTGACGATTTTATTGTCGGGATTGGACTCTAGC CTTCGACTACCGACCCATGCTTGTACTTCTCTCGGGACGAAGGGGGAGAA ACAAACATTCTCGTGGCCGTCTATGTTGACGATCTGGTCATCGCTGGACG TCGTGAGAAAGTAGACGAGTTCAAGCACAACACAAGTCGGCATTTTAGGA TGGAAGACTTGGGCTCCCTCTCGCGCGTGTTGGGAATAGGAGTACGACGT GACCGCCCTAACGATGCCATAACCATCTCGCAAGGTAGCTACATCCGCGA GGTACTGAAAAGATACGGTTTTGACGAGTGTCGAAGTGGGCCCACCCCTG TAGAGGGAGAAGTGAAGATTTTGGCACCCAAGTCGGCCGCCAAGCCCCCC GAACCCAAACCACTTGGGGCTGTACTGTCGGACATGGGCGCAGGAGTACA AGAAAGCAGCAGTAAGAGAAGTGGCAATCCATCTGAATACAGAGGCATGG TAGGATCACTCATGTACGCCTCGACGGGAAGTAGACCTGATATGGCATAC GCGGTATACCAAGCAGCACGTCGTATGGAGGACCCATGTCGGAAAGACTC CAGTAGATGCAAGCGCATTTTTCGTTGTCTCAGTACTGTGCCTGACCTTG GCATTACGTTGGGCGGTAAGAATAATGGTCACGGTCTGGAAGGATTCGTT GATGCCGATTGGGCGGAAGATTTTGAGGACCGAAAGTCCACAACAGGATA CGTATTCACGCTGAACGGTGGTGCGATAAGTTGGTTCTCTAGGAAATAAC AGCCCGCCACGTGGTCCAGTTCAGAGGCAGCGTACGTTGCTGCAGGAAAA GCGAGAAATGAGATGGTATATCTTGGGGATTTGCTAGGATCGATAGGTTT CGGATGCAGGGGGGGGAGCACGACATTATTTGAGGACAACAAGTCCGCTA TCAATCTCGGTAAGAGATCTGGCGCACATTGCAGGACAAAGCACATCGGA GTGCGCTGGCACGGAATTCAAGAGTGGGTTCGGAAAGGAATATTGGCGTT GAAATACGTGCAGACCGGCAACCAACTTCCTGACATT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig3024:2118..3404-

>mRNA_H-paniculata_contig3024.8198.1 ID=mRNA_H-paniculata_contig3024.8198.1|Name=mRNA_H-paniculata_contig3024.8198.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1044bp|location=Sequence derived from alignment at H-paniculata_contig3024:2118..3404- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAGACTTGGGCTCCCTCTCGCGCGTGTTGGGAATAGGAGTACGACG
TGACCGCCCTAACGATGCCATAACCATCTCGCAAGGTAGCTACATCCGCG
AGGTACTGAAAAGATACGGTTTTGACGAGTGTCGAAGTGGGCCCACCCCT
GTAGAGGGAGAAGTGAAGATTTTGGCACCCAAATGGAAGACTTGGGCTCC
CTCTCGCGCGTGTTGGGAATAGGAGTACGACGTGACCGCCCTAACGATGC
CATAACCATCTCGCAAGGTAGCTACATCCGCGAGGTACTGAAAAGATACG
GTTTTGACGAGTGTCGAAGTGGGCCCACCCCTGTAGAGGGAGAAGTGAAG
ATTTTGGCACCCAACAGTAAGAGAAGTGGCAATCCATCTGAATACAGAGG
CATGGTAGGATCACTCATGTACGCCTCGACGGGAAGTAGACCTGATATGG
CATACGCGGTATACCAAGCAGCACGTCGTATGGAGGACCCATGTCGGAAA
GACTCCAGTAGATGCAAGCGCATTTTTCGTTGTCTCAGTACTGTGCCTGA
CCTTGGCATTACGTTGGGCGGTAAGAATAATGGTCACGGTCTGGAAGGAT
TCGTTGATGCCGATTGGGCGGAAGATTTTGAGGACCGAAAGTCCACAACA
GGATACGTATTCACGCTGAACGGTGGTGCGATAAGTTGGTTCTCTAGGAA
ATAACAGTAAGAGAAGTGGCAATCCATCTGAATACAGAGGCATGGTAGGA
TCACTCATGTACGCCTCGACGGGAAGTAGACCTGATATGGCATACGCGGT
ATACCAAGCAGCACGTCGTATGGAGGACCCATGTCGGAAAGACTCCAGTA
GATGCAAGCGCATTTTTCGTTGTCTCAGTACTGTGCCTGACCTTGGCATT
ACGTTGGGCGGTAAGAATAATGGTCACGGTCTGGAAGGATTCGTTGATGC
CGATTGGGCGGAAGATTTTGAGGACCGAAAGTCCACAACAGGATACGTAT
TCACGCTGAACGGTGGTGCGATAAGTTGGTTCTCTAGGAAATAA
back to top