mRNA_H-paniculata_contig30158.8178.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30158.8178.1
Unique NamemRNA_H-paniculata_contig30158.8178.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig30158.8178.1 vs. uniprot
Match: A0A820PC48_9BILA (Hypothetical protein (Fragment) n=1 Tax=Adineta steineri TaxID=433720 RepID=A0A820PC48_9BILA)

HSP 1 Score: 50.1 bits (118), Expect = 1.400e-6
Identity = 20/37 (54.05%), Postives = 25/37 (67.57%), Query Frame = 1
Query:    7 DPCSPDPCQNGGSCVVDIGGGHMCTCTAGFGGMSCQT 117
            D CSP+PCQNGG+C    G G+ C C AG  G +C+T
Sbjct:    4 DACSPNPCQNGGTCRTVNGNGYQCICAAGTTGTNCET 40          
BLAST of mRNA_H-paniculata_contig30158.8178.1 vs. uniprot
Match: UPI0003F08179 (neurogenic locus Notch protein-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F08179)

HSP 1 Score: 51.2 bits (121), Expect = 2.650e-6
Identity = 22/40 (55.00%), Postives = 29/40 (72.50%), Query Frame = 1
Query:    4 TDPCSPDPCQNGGSCVVDIGGGHMCTCTAGFGGMSCQTST 123
            TDPCSP+PC NGG C +  G G+ CTC + + G +C+TST
Sbjct:  170 TDPCSPNPCLNGGVCDL-YGSGYSCTCDSAWVGANCETST 208          
BLAST of mRNA_H-paniculata_contig30158.8178.1 vs. uniprot
Match: C3YBB9_BRAFL (Uncharacterized protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3YBB9_BRAFL)

HSP 1 Score: 51.2 bits (121), Expect = 2.660e-6
Identity = 22/38 (57.89%), Postives = 24/38 (63.16%), Query Frame = 1
Query:    4 TDPCSPDPCQNGGSCVVDIGGGHMCTCTAGFGGMSCQT 117
            TDPC PDPCQNGG C    G  + C C  G+GG  CQT
Sbjct:  437 TDPCDPDPCQNGGVCTSS-GDSYTCECVDGWGGPDCQT 473          
BLAST of mRNA_H-paniculata_contig30158.8178.1 vs. uniprot
Match: UPI001601992E (uncharacterized protein LOC118409788 n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI001601992E)

HSP 1 Score: 51.2 bits (121), Expect = 2.660e-6
Identity = 22/38 (57.89%), Postives = 24/38 (63.16%), Query Frame = 1
Query:    4 TDPCSPDPCQNGGSCVVDIGGGHMCTCTAGFGGMSCQT 117
            TDPC PDPCQNGG C    G  + C C  G+GG  CQT
Sbjct:  499 TDPCDPDPCQNGGVCTSS-GDSYTCECVDGWGGPDCQT 535          
BLAST of mRNA_H-paniculata_contig30158.8178.1 vs. uniprot
Match: K1PV07_CRAGI (Peptidase inhibitor 16 n=3 Tax=Crassostrea gigas TaxID=29159 RepID=K1PV07_CRAGI)

HSP 1 Score: 49.3 bits (116), Expect = 1.280e-5
Identity = 21/38 (55.26%), Postives = 29/38 (76.32%), Query Frame = 1
Query:    4 TDPCSPDPCQNGGSCVVDIGGGHMCTCTAGFGGMSCQT 117
            T+PCS +PC+NGGSC VD G   +C CT+G+ G +C+T
Sbjct:  263 TNPCSTNPCKNGGSCSVD-GDKAVCQCTSGWSGSTCET 299          
BLAST of mRNA_H-paniculata_contig30158.8178.1 vs. uniprot
Match: A0A821P194_9BILA (Hypothetical protein (Fragment) n=1 Tax=Rotaria socialis TaxID=392032 RepID=A0A821P194_9BILA)

HSP 1 Score: 47.4 bits (111), Expect = 1.630e-5
Identity = 18/36 (50.00%), Postives = 21/36 (58.33%), Query Frame = 1
Query:    7 DPCSPDPCQNGGSCVVDIGGGHMCTCTAGFGGMSCQ 114
            DPCS +PC NGG C     GG  C C +GF G  C+
Sbjct:    7 DPCSQNPCMNGGQCYPTNAGGFSCQCPSGFNGQQCE 42          
BLAST of mRNA_H-paniculata_contig30158.8178.1 vs. uniprot
Match: UPI001939E87E (uncharacterized protein LOC120337321 isoform X1 n=6 Tax=Styela clava TaxID=7725 RepID=UPI001939E87E)

HSP 1 Score: 48.9 bits (115), Expect = 1.740e-5
Identity = 19/39 (48.72%), Postives = 27/39 (69.23%), Query Frame = 1
Query:    4 TDPCSPDPCQNGGSCVVDIGGGHMCTCTAGFGGMSCQTS 120
            TDPCS +PC NGG+C++ + GG+ C C  G+ G  CQ +
Sbjct:  671 TDPCSKNPCGNGGNCLI-VPGGYQCQCRVGYTGNKCQNA 708          
BLAST of mRNA_H-paniculata_contig30158.8178.1 vs. uniprot
Match: A0A0L0FFK1_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FFK1_9EUKA)

HSP 1 Score: 48.9 bits (115), Expect = 1.740e-5
Identity = 22/37 (59.46%), Postives = 25/37 (67.57%), Query Frame = 1
Query:    1 VTDPCSPDPCQNGGSCVVDIGGGHMCTCTAGFGGMSC 111
            V DPCSP+PC+NGGSC  D G G  C C  GF G +C
Sbjct:  244 VVDPCSPNPCENGGSCSPD-GSGFSCDCGDGFEGPTC 279          
BLAST of mRNA_H-paniculata_contig30158.8178.1 vs. uniprot
Match: A0A1M3NHD5_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium 68-20 TaxID=1895795 RepID=A0A1M3NHD5_9DELT)

HSP 1 Score: 48.5 bits (114), Expect = 2.390e-5
Identity = 19/36 (52.78%), Postives = 25/36 (69.44%), Query Frame = 1
Query:   13 CSPDPCQNGGSCVVDIGGGHMCTCTAGFGGMSCQTS 120
            C+P+PCQNGG+C  D  G H C C  GF G +C+T+
Sbjct:   96 CTPNPCQNGGTCDDDANG-HTCKCAPGFSGANCETN 130          
BLAST of mRNA_H-paniculata_contig30158.8178.1 vs. uniprot
Match: UPI00077AA70C (fibropellin-3-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077AA70C)

HSP 1 Score: 47.0 bits (110), Expect = 2.860e-5
Identity = 19/35 (54.29%), Postives = 25/35 (71.43%), Query Frame = 1
Query:   13 CSPDPCQNGGSCVVDIGGGHMCTCTAGFGGMSCQT 117
            CSP+PCQNG +CV  +G  + C C AG+ G +CQT
Sbjct:    7 CSPNPCQNGATCVNGVGS-YRCNCVAGYTGGTCQT 40          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30158.8178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A820PC48_9BILA1.400e-654.05Hypothetical protein (Fragment) n=1 Tax=Adineta st... [more]
UPI0003F081792.650e-655.00neurogenic locus Notch protein-like n=1 Tax=Saccog... [more]
C3YBB9_BRAFL2.660e-657.89Uncharacterized protein n=1 Tax=Branchiostoma flor... [more]
UPI001601992E2.660e-657.89uncharacterized protein LOC118409788 n=1 Tax=Branc... [more]
K1PV07_CRAGI1.280e-555.26Peptidase inhibitor 16 n=3 Tax=Crassostrea gigas T... [more]
A0A821P194_9BILA1.630e-550.00Hypothetical protein (Fragment) n=1 Tax=Rotaria so... [more]
UPI001939E87E1.740e-548.72uncharacterized protein LOC120337321 isoform X1 n=... [more]
A0A0L0FFK1_9EUKA1.740e-559.46Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
A0A1M3NHD5_9DELT2.390e-552.78Uncharacterized protein n=1 Tax=Myxococcales bacte... [more]
UPI00077AA70C2.860e-554.29fibropellin-3-like n=1 Tax=Acropora digitifera Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30158contigH-paniculata_contig30158:1917..2039 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size123
Cds size123
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929925.6336107-CDS-H-paniculata_contig30158:1916..20391622929925.6336107-CDS-H-paniculata_contig30158:1916..2039Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30158 1917..2039 -
1691481072.2533755-CDS-H-paniculata_contig30158:1916..20391691481072.2533755-CDS-H-paniculata_contig30158:1916..2039Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30158 1917..2039 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30158.8178.1prot_H-paniculata_contig30158.8178.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30158 1917..2039 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30158.8178.1

>prot_H-paniculata_contig30158.8178.1 ID=prot_H-paniculata_contig30158.8178.1|Name=mRNA_H-paniculata_contig30158.8178.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=41bp
VTDPCSPDPCQNGGSCVVDIGGGHMCTCTAGFGGMSCQTST
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mRNA from alignment at H-paniculata_contig30158:1917..2039-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30158.8178.1 ID=mRNA_H-paniculata_contig30158.8178.1|Name=mRNA_H-paniculata_contig30158.8178.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=123bp|location=Sequence derived from alignment at H-paniculata_contig30158:1917..2039- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTACAGATCCTTGCAGCCCGGACCCTTGCCAAAATGGAGGTAGCTGTGT CGTGGACATTGGCGGGGGGCATATGTGCACATGCACTGCTGGCTTCGGAG GAATGTCCTGCCAAACCTCCACC
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Coding sequence (CDS) from alignment at H-paniculata_contig30158:1917..2039-

>mRNA_H-paniculata_contig30158.8178.1 ID=mRNA_H-paniculata_contig30158.8178.1|Name=mRNA_H-paniculata_contig30158.8178.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=246bp|location=Sequence derived from alignment at H-paniculata_contig30158:1917..2039- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTACAGATCCTTGCAGCCCGGACCCTTGCCAAAATGGAGGTAGCTGTGT
CGTGGACATTGGCGGGGGGCATATGTGCACATGCACTGCTGGCTTCGGAG
GAATGTCCTGCCAAACCTCCACCGTTACAGATCCTTGCAGCCCGGACCCT
TGCCAAAATGGAGGTAGCTGTGTCGTGGACATTGGCGGGGGGCATATGTG
CACATGCACTGCTGGCTTCGGAGGAATGTCCTGCCAAACCTCCACC
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