mRNA_H-paniculata_contig3013.8175.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3013.8175.1
Unique NamemRNA_H-paniculata_contig3013.8175.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3013.8175.1 vs. uniprot
Match: A0A6H5JFY4_9PHAE (zf-C2HC5 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFY4_9PHAE)

HSP 1 Score: 303 bits (776), Expect = 1.240e-90
Identity = 246/560 (43.93%), Postives = 287/560 (51.25%), Query Frame = 3 
Query:   63 TQQWLEGELRRMLGFNEVEEIVRFAFESFSVSQTVELRQYLEQFLGQSKEVEKLCNELEARRAGR-----------KSKPSTWKSSS--DDFWGGGKSSSVAQSSLALSGGAGQQPKGVDQGKRKAKGKLYQKAAXXXXXXXXXXXGASGNSKKAAAPKTPSSRDPAPAPLTAATRPPPATATAESVLGAATPKTEPTSSKSASKIKRGAPTPGGARMDPGRALPAAVGKKGKQGKASMGAGGMQGGAPELRPGVTPTVDEPTPEWSGVTCLCMAMRHDLLTNCTSCGKIACVNEGGFGCSFCGSALPVTGREPRKVGDPKIGGRGRGDGGSQQSEALKEALARKEKLLLFDRTSASRTRVLDDQGDYFTSHNWLSQKEREKGEAEEKARRENEALQRGSRRQVKLSIDIMGRRVIETR--SEGGVEDDQDGGPEA-----AVVEGISLDLGATSRPSGAGSSSGVGKGEAADRTVITENISIGSEARKDQRRSLENTGLRGRAKEVYDVMRANLEKEGRRQ----VGGKGKAG-KSSGTVADISRLSLWRVQHDVTPKD 1667
            T+ W EGELRRMLGF+EVEEI RFA +SF VSQ VELRQYLEQFLGQS+  + L                      K +   ++ ++  +DFWGGG +S   + + A S                          XXXXXXXXXXX         A                        TAT   V G      +P +S                                 +  A           PE  P        P PEWSGVTCLCM   HD++TNCT CGKIACV EGGFGCSFCG  LP TGREPR      + G       +  S ALKEAL RK++LLLFDRTSASRTRVLDDQGDYFTSHNWLSQ+EREKGEAEEKARR++ A +RG+RRQVK+SIDIMGRRVIET    +GG+ D   G   A        +G+SLD G+                         E          +QR SLENTGLRGRAKEVYDVMRANL+K+ RRQ     GGK  AG +  G V + SR++LWRVQHDV   D
Sbjct:    4 TRAWFEGELRRMLGFDEVEEIARFALDSFPVSQPVELRQYLEQFLGQSRGGKSLLTAEGGNNXXXXXXXXXXXXXGKGRGKVYQKAAVEEDFWGGGTTSGRVKPASAPSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRAGGAT----------------------GTATKGDVGGGRVSSKQPLASSPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKTTA----------LPETLP-----APAPVPEWSGVTCLCMGKTHDVVTNCTDCGKIACVKEGGFGCSFCGCRLPTTGREPRSATSGGVDGAA--GAAAPHSAALKEALERKDRLLLFDRTSASRTRVLDDQGDYFTSHNWLSQREREKGEAEEKARRDDAASRRGARRQVKMSIDIMGRRVIETHPGEDGGLADGGGGEXXADEDASRKTQGVSLDFGSXXXXXXXXX---XXXXXXXXXXXXAEEADTPGAGNGNQRLSLENTGLRGRAKEVYDVMRANLDKKSRRQRPGGAGGKAVAGSRIVGAVPEASRVNLWRVQHDVDSDD 521
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BLAST of mRNA_H-paniculata_contig3013.8175.1 vs. uniprot
Match: D7FU14_ECTSI (Similar to thyroid hormone receptor interactor 4 isoform 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU14_ECTSI)

HSP 1 Score: 280 bits (717), Expect = 4.690e-85
Identity = 171/292 (58.56%), Postives = 194/292 (66.44%), Query Frame = 3 
Query:  843 MAMRHDLLTNCTSCGKIACVNEGGFGCSFCGSALPVTGREPRKVGDPKIGGRGRGDGGSQQSEALKEALARKEKLLLFDRTSASRTRVLDDQGDYFTSHNWLSQKEREKGEAEEKARRENEALQRGSRRQVKLSIDIMGRRVIETRSEGGVEDDQDGGPEAA------VVEGISLDLGATSRPSGAGSSSGVGKGEAADRTVITENISIGSEA------RKDQRRSLENTGLRGRAKEVYDVMRANLEKEGRRQ----VGGKGKAG-KSSGTVADISRLSLWRVQHDVTPKD 1667
            M   HD++TNCT CGKIACV EGGFGCSFCG  LP TGREPR      + G       + QS ALKEAL RK++LLLFDRTSASRTRVLDDQGDYFTSHNWLSQ+EREKGEAEEK RR++ A +RG+RRQVK+SIDIMGRRVIET+  G    D  GG   A        +G+SLD          GSSS  G G A          SIG EA        +QR SLENTGLRGRAKEVYDVMRANL+K+ RR+     GGK  AG +  G V + SR++LWRVQHDV   D
Sbjct:    1 MGKTHDVVTNCTDCGKIACVKEGGFGCSFCGCRLPTTGREPRSAASGGVDGAAGAT--APQSAALKEALERKDRLLLFDRTSASRTRVLDDQGDYFTSHNWLSQREREKGEAEEKVRRDDAASRRGARRQVKMSIDIMGRRVIETQDPGEGRADGGGGEGEADDDASKKTQGVSLDF---------GSSSAAGGGAAGSSAXXXXXGSIGEEAGTSGAGNGNQRLSLENTGLRGRAKEVYDVMRANLDKKSRRRRPRGAGGKAVAGSRIVGAVPETSRVNLWRVQHDVDSDD 281
[Close]
BLAST of mRNA_H-paniculata_contig3013.8175.1 vs. uniprot
Match: A7RPW2_NEMVE (Predicted protein n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7RPW2_NEMVE)

HSP 1 Score: 100 bits (250), Expect = 1.260e-18
Identity = 63/170 (37.06%), Postives = 97/170 (57.06%), Query Frame = 3 
Query:  834 CLCMAMRHDLLTNCTSCGKIACVNEGGFGCSFCGSAL------PVTGREPRKVG-----------DPKIGGRGR-GDGGSQQSEALKEALARKEKLLLFDRTSASRTRVLDDQGDYFTS--HNWLSQKEREKGEAEEKARRENEALQRGSRRQVKLSIDIMGRRVIETRS 1283
            C C+  +H L+ NCTSCG+I C  EG   C FCG+ +       +  RE +K               ++  +GR G    +  + L +A+A K KLL +D+TS  RT+V+DD+ DYF++  + WLS+KE+E+   +E+  R   A + GSRR +K+++D  GRRV+E  S
Sbjct:  125 CECLGQKHGLVNNCTSCGRIVCDQEGAGPCYFCGALVCSRAEQEIIARESKKSAKLLKQLMSQEFSEEVKSQGRMGTSNGKDLQGLDKAIAHKNKLLEYDKTSVCRTKVIDDECDYFSTDGNKWLSKKEKEQLTVKEEELR---AKRHGSRRDMKITLDFAGRRVVEENS 291
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BLAST of mRNA_H-paniculata_contig3013.8175.1 vs. uniprot
Match: A0A0N8D2Q7_9CRUS (Activating signal cointegrator n=2 Tax=Daphnia magna TaxID=35525 RepID=A0A0N8D2Q7_9CRUS)

HSP 1 Score: 100 bits (248), Expect = 2.010e-18
Identity = 63/159 (39.62%), Postives = 92/159 (57.86%), Query Frame = 3 
Query:  834 CLCMAMRHDLLTNCTSCGKIACVNEGGFGCSFCGSALPVTGREPRKVGDP------KIGGRGRGDG-GSQQSEALKEALARKEKLLLFDRTSASRTRVLDDQGDYFTS--HNWLSQKEREKGEAEEKARRENEALQRGSRRQVKLSIDIMGRRVIETRS 1283
            C C A +H L+ NC  CG++ C  EG   C FC   +P   +E     +       K  G+G  DG  +   +A   A+A KEKLL FDRTS  RTRV+DD+ DYF +  + WL+ K+R+   ++E+  RE+   + GSRR +K+++D  GR+VIE +S
Sbjct:  131 CECQASKHSLIRNCLECGRVICSQEGPGPCIFCTENMPANEKETYSQANKPAPQRSKQSGKGFLDGTAALPDKAFTTAMAHKEKLLEFDRTSEHRTRVIDDESDYFNADGNKWLNPKQRDALRSKERELRES---RHGSRRGMKVTLDFAGRQVIEEQS 286
[Close]
BLAST of mRNA_H-paniculata_contig3013.8175.1 vs. uniprot
Match: A0A6P8GZP8_ACTTE (activating signal cointegrator 1-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8GZP8_ACTTE)

HSP 1 Score: 98.6 bits (244), Expect = 7.000e-18
Identity = 63/166 (37.95%), Postives = 90/166 (54.22%), Query Frame = 3 
Query:  834 CLCMAMRHDLLTNCTSCGKIACVNEGGFGCSFCGSALPVTGREPRKVGDPKIGGR------------------GRGDGGSQQSEALKEALARKEKLLLFDRTSASRTRVLDDQGDYF-TSHNWLSQKEREKGEAEEKARRENEALQRGSRRQVKLSIDIMGRRVIE 1274
            C C+A +H L+ NCTSCG+I C  EG   C FCGS +    ++     D K   +                     +  +Q+ E  + A+  K KLL FD+TSA RT V+DD+ DYF T+  WLS +ER K E +E+  RE    + GSRR +K+++D  GR+V+E
Sbjct:  134 CECLAQKHSLINNCTSCGRIVCEQEGEGPCYFCGSLVCTKAQKEILARDSKKSAKLLKQLMQQDFSDDVKKLQKXKNMSAQELEGYQRAVEHKNKLLEFDKTSARRTHVIDDEADYFSTNSKWLSTEERTKLEKKEEELREK---RHGSRRNMKVTLDFAGRKVVE 296
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BLAST of mRNA_H-paniculata_contig3013.8175.1 vs. uniprot
Match: E9GBD9_DAPPU (ASCH domain-containing protein n=4 Tax=Daphnia TaxID=6668 RepID=E9GBD9_DAPPU)

HSP 1 Score: 98.2 bits (243), Expect = 8.310e-18
Identity = 64/159 (40.25%), Postives = 90/159 (56.60%), Query Frame = 3 
Query:  834 CLCMAMRHDLLTNCTSCGKIACVNEGGFGCSFCGSALPVTGREPRKVGD------PKIGGRGRGDGGSQ-QSEALKEALARKEKLLLFDRTSASRTRVLDDQGDYFT--SHNWLSQKEREKGEAEEKARRENEALQRGSRRQVKLSIDIMGRRVIETRS 1283
            C C A +H L+ NC  CG++ C  EG   C FC   +    +E     +       K  GR   DG +    +A   A+A KEKLL FDRTS  RTRV+DD+ DYF   S+ WL+ K+R+    +EK  R++   + GSRRQ+K+++D  GR+VIE +S
Sbjct:  129 CECQASKHSLVRNCLECGRVICAQEGPGPCVFCTENMSACEKEALLQSNNAPAQRTKQSGRRFLDGTAPLPDKAFTTAMAHKEKLLEFDRTSEHRTRVIDDESDYFNADSNKWLNPKQRDALRTKEKELRDS---RHGSRRQIKVTLDFAGRQVIEEQS 284
[Close]
BLAST of mRNA_H-paniculata_contig3013.8175.1 vs. uniprot
Match: A0A8J1TXV5_OWEFU (Ofus.G072647 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1TXV5_OWEFU)

HSP 1 Score: 97.1 bits (240), Expect = 2.860e-17
Identity = 66/164 (40.24%), Postives = 95/164 (57.93%), Query Frame = 3 
Query:  831 TCLCMAMRHDLLTNCTSCGKIACVNEGGFGCSFCGSALPVTGREPRKVGDPKIGG--------RGRGDGGSQQSEA-LKEALARKEKLLLFDRTSASRTRVLDDQGDYFTSHN-WLSQKEREKGEAEEKARRENEALQRGSRRQVKLSIDIMGRRVIETRSEGG 1292
            TC C A++H L+ NC  CG++ C  EG   C FC   L  T  E   +      G        + +  G  + SE  L++A+A K +LL +DRTSA RT+V+DD+ DYF+S + WLS+K+REK +  E+  R   A++  SR+  K+++D  GRRVIE   EGG
Sbjct:  182 TCECQAVKHKLVNNCVGCGRVVCEQEGSGPCMFC-DTLVCTNEEGEMIARGSKKGEKLKNYLMKDQYKGLIKDSEEKLEKAIAHKNRLLEYDRTSARRTKVIDDESDYFSSDSQWLSKKDREKLKKREEELR---AIKHASRKDRKITLDFAGRRVIE---EGG 338
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BLAST of mRNA_H-paniculata_contig3013.8175.1 vs. uniprot
Match: UPI000C04B7AA (LOW QUALITY PROTEIN: activating signal cointegrator 1-like n=1 Tax=Stylophora pistillata TaxID=50429 RepID=UPI000C04B7AA)

HSP 1 Score: 94.7 bits (234), Expect = 1.180e-16
Identity = 63/178 (35.39%), Postives = 101/178 (56.74%), Query Frame = 3 
Query:  834 CLCMAMRHDLLTNCTSCGKIACVNEGGFGCSFCGSA---------LPVTGREPRKVGDPKIGGRGRGDGGSQQSEALKEALARKEKLLLFDRTSASRTRVLDDQGDYFTS--HNWLSQKEREKGEAEEKARRENEALQRGSRRQVKLSIDIMGRRVIETRSEGGVEDDQDGGPEAAVV 1334
            C C+A +H L+ NCT CG+I C  EG   C FCG+          L    ++  K+ +  +      D GS+  E L++A+A K +L+ +D++   RT+V+DD+ DYF S  + WLS+KER+  + +E   RE      GS R++K+++D  GR+V++  SE  V  D    P++AV+
Sbjct:  130 CECLAQKHALVNNCTECGRIICKQEGSGPCFFCGALVCTKEEQEILARKSKKSHKLHEKLLKQGIEHDSGSKLGEGLQKAIAHKNRLIEYDKSGVRRTKVIDDECDYFASDTNKWLSKKERDALKKKEDELREKRY---GSHRKMKVTLDFAGRKVVD-ESEPEVNFD----PDSAVL 299
[Close]
BLAST of mRNA_H-paniculata_contig3013.8175.1 vs. uniprot
Match: A0A2I0XBL4_9ASPA (zf-C2HC5 domain-containing protein n=2 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0XBL4_9ASPA)

HSP 1 Score: 92.8 bits (229), Expect = 2.220e-16
Identity = 61/163 (37.42%), Postives = 91/163 (55.83%), Query Frame = 3 
Query:  825 GVTCLCMAMRHDLLTNCTSCGKIACVNEGGFGCSFCGSALPVTGREPRKVGDPKIGGRGRGDGGSQQSEALKEALARKEKLLLFDRTSASRTRVLDDQGDYFT--SHNWLSQKEREKGEAEEKARRENEALQRGSRRQVKLSIDIMGRRVIETRSEGGVEDDQ 1307
            G  C C A RH L++NC SCGKI C  EG   CSFCG+ +   G     + +  I         +  SEA  EA A++  L+ +DR SA+RT+V+DDQ DY+    +NWLS +E+E  + ++K   E E  +RG    V ++ D++GR+V+  + E    + Q
Sbjct:  163 GKPCSCQARRHQLVSNCLSCGKIVCEQEGEGPCSFCGALVLREGSTYAGLENFSIP--------TSDSEATAEAYAKR--LVEYDRNSAARTKVIDDQSDYYEVEGNNWLSTEEKELLKKQQKEIEEAEEARRGK---VIVTFDLVGRKVVLNKDEASEMESQ 312
[Close]
BLAST of mRNA_H-paniculata_contig3013.8175.1 vs. uniprot
Match: UPI000C1CD5B2 (activating signal cointegrator 1 n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1CD5B2)

HSP 1 Score: 91.7 bits (226), Expect = 4.230e-16
Identity = 61/160 (38.12%), Postives = 87/160 (54.37%), Query Frame = 3 
Query:  825 GVTCLCMAMRHDLLTNCTSCGKIACVNEGGFGCSFCGSALPVTGREPRKVGDPKIGGRGRGDGGSQQSEALKEALARKEKLLLFDRTSASRTRVLDDQGDYFT--SHNWLSQKEREKGEAEEKARRENEALQRGSRRQVKLSIDIMGRRVIETRSEGGVE 1298
            G  C C A RH L++NC SCGKI C  EG   C+FCG+ +   G           GG   G      +EA  EA A++  L+ +DR SA+RT V+DDQ DY+    ++WLS +E+E     +K R E E  +R  R +V ++ D++GR+V+    E   E
Sbjct:  164 GKPCSCQARRHRLVSNCLSCGKIVCEQEGEGPCNFCGALVLREGSA--------YGGLDEGAVPVSDAEAAAEAYAKR--LVDYDRNSAARTTVIDDQSDYYAIEGNSWLSAEEKE---LLQKKREELEEAERAKRSKVVMTFDLLGRKVLLNEDEASEE 310
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3013.8175.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JFY4_9PHAE1.240e-9043.93zf-C2HC5 domain-containing protein n=1 Tax=Ectocar... [more]
D7FU14_ECTSI4.690e-8558.56Similar to thyroid hormone receptor interactor 4 i... [more]
A7RPW2_NEMVE1.260e-1837.06Predicted protein n=2 Tax=Nematostella vectensis T... [more]
A0A0N8D2Q7_9CRUS2.010e-1839.62Activating signal cointegrator n=2 Tax=Daphnia mag... [more]
A0A6P8GZP8_ACTTE7.000e-1837.95activating signal cointegrator 1-like n=1 Tax=Acti... [more]
E9GBD9_DAPPU8.310e-1840.25ASCH domain-containing protein n=4 Tax=Daphnia Tax... [more]
A0A8J1TXV5_OWEFU2.860e-1740.24Ofus.G072647 protein n=1 Tax=Owenia fusiformis Tax... [more]
UPI000C04B7AA1.180e-1635.39LOW QUALITY PROTEIN: activating signal cointegrato... [more]
A0A2I0XBL4_9ASPA2.220e-1637.42zf-C2HC5 domain-containing protein n=2 Tax=Dendrob... [more]
UPI000C1CD5B24.230e-1638.13activating signal cointegrator 1 n=1 Tax=Olea euro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3013contigH-paniculata_contig3013:2561..8266 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score287.7
Seed ortholog evalue1.1e-74
Seed eggNOG ortholog2880.D7FU14
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transcription coactivator activity
EggNOG OGsKOG2845@1,KOG2845@2759
Ec32 ortholog descriptionZinc finger, C2HC5-type
Ec32 orthologEc-27_001060.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size2179
Cds size1626
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3013.8175.1prot_H-paniculata_contig3013.8175.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3013 3067..8219 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929925.233428-UTR-H-paniculata_contig3013:2560..30661622929925.233428-UTR-H-paniculata_contig3013:2560..3066Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3013 2561..3066 -
1691481072.1354322-UTR-H-paniculata_contig3013:2560..30661691481072.1354322-UTR-H-paniculata_contig3013:2560..3066Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3013 2561..3066 -
1622929925.39335-UTR-H-paniculata_contig3013:8219..82661622929925.39335-UTR-H-paniculata_contig3013:8219..8266Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3013 8220..8266 -
1691481072.1762874-UTR-H-paniculata_contig3013:8219..82661691481072.1762874-UTR-H-paniculata_contig3013:8219..8266Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3013 8220..8266 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929925.288889-CDS-H-paniculata_contig3013:3066..45301622929925.288889-CDS-H-paniculata_contig3013:3066..4530Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3013 3067..4530 -
1691481072.1462913-CDS-H-paniculata_contig3013:3066..45301691481072.1462913-CDS-H-paniculata_contig3013:3066..4530Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3013 3067..4530 -
1622929925.3547049-CDS-H-paniculata_contig3013:7672..77681622929925.3547049-CDS-H-paniculata_contig3013:7672..7768Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3013 7673..7768 -
1691481072.1557183-CDS-H-paniculata_contig3013:7672..77681691481072.1557183-CDS-H-paniculata_contig3013:7672..7768Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3013 7673..7768 -
1622929925.3794866-CDS-H-paniculata_contig3013:8153..82191622929925.3794866-CDS-H-paniculata_contig3013:8153..8219Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3013 8154..8219 -
1691481072.1653166-CDS-H-paniculata_contig3013:8153..82191691481072.1653166-CDS-H-paniculata_contig3013:8153..8219Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3013 8154..8219 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3013.8175.1

>prot_H-paniculata_contig3013.8175.1 ID=prot_H-paniculata_contig3013.8175.1|Name=mRNA_H-paniculata_contig3013.8175.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=542bp
MGDNGTQQWLEGELRRMLGFNEVEEIVRFAFESFSVSQTVELRQYLEQFL
GQSKEVEKLCNELEARRAGRKSKPSTWKSSSDDFWGGGKSSSVAQSSLAL
SGGAGQQPKGVDQGKRKAKGKLYQKAAAEDFWGGGTTSGASGNSKKAAAP
KTPSSRDPAPAPLTAATRPPPATATAESVLGAATPKTEPTSSKSASKIKR
GAPTPGGARMDPGRALPAAVGKKGKQGKASMGAGGMQGGAPELRPGVTPT
VDEPTPEWSGVTCLCMAMRHDLLTNCTSCGKIACVNEGGFGCSFCGSALP
VTGREPRKVGDPKIGGRGRGDGGSQQSEALKEALARKEKLLLFDRTSASR
TRVLDDQGDYFTSHNWLSQKEREKGEAEEKARRENEALQRGSRRQVKLSI
DIMGRRVIETRSEGGVEDDQDGGPEAAVVEGISLDLGATSRPSGAGSSSG
VGKGEAADRTVITENISIGSEARKDQRRSLENTGLRGRAKEVYDVMRANL
EKEGRRQVGGKGKAGKSSGTVADISRLSLWRVQHDVTPKDN*
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mRNA from alignment at H-paniculata_contig3013:2561..8266-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3013.8175.1 ID=mRNA_H-paniculata_contig3013.8175.1|Name=mRNA_H-paniculata_contig3013.8175.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5706bp|location=Sequence derived from alignment at H-paniculata_contig3013:2561..8266- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGGGCGCAGTTACTGTACTCCCCGTGTCTCTTTCTTGTCATCGCTATG
GGTGACAATGGGACTCAACAATGGCTTGAGGGGGAGCTACGAAGAATGCT
TGGTTTCAATGAGGTGATATGTTTAATTCATTACATGTTCTCACCTCTTC
GATTGCAAACGAGCTTGATGCGGCACGCTCAAGGTTCCAGAGCCCGAGCT
GCATACACACCCGTACAAGTTAGACCCGTATCTATCGAATGCTTCCGTGT
GACACACGTGGATCTCGTAGCATGCACCCGCATCCCTGGATGAAATAGGG
TTAAGGCTAGCACTACTTGTATTTTCAGGTTGAACCGCTTGTGCCATTAC
CGCCTACTGAAATTACAAGTTGTACTCAGATTACAATGTACTGCAGGAAC
ACGCCCTCGTGAATGCCAGGCAATGTTAACTGTGAAGCTCCAAAGGGCCG
CCACATTTGCATTTTTCTTTGCCCCCCTTATTTATTGCCTCGCAACAGGT
AGAAGAAATCGTGAGGTTCGCCTTCGAGTCGTTCTCCGTGTCGCAGACTG
TTGAACTCAGGCAGTATTTGGAGCAGTTTCTGGGCCAGTCCAAGGTATGT
ACATTGAAGACGATTTATTTTGAAACATAGAATCATCGATATACATCCTC
ACTTAATTTCAAATATATCAGGTGTTCCAACCAGTAAAACTATGTACTGT
TGATGCAAAGGATTTTAGACAATGCAAGGCTTGAGGCATACCGTCCCTCC
CGTCCCCCCGATTTGATATATTTTGTTGTATAATTTTGTTGCTAAGTGTA
CGCAACTGAGAGTTGAGGTCAGCGCTTAACCCCCCTCTCCACCCTACCGC
TTTGACGGCCTCAGCACATTTCTCTGTGTGGGTTCTGCCTCGAGTAGGCA
GTCTGCTAAACCTATCTTCGACGATTCAAGTGCTGCTGAATTTGTGTAGC
ACGTAGTTCAGCGCAGGGCGGGTAATGCTGTAGGACCACAGAGCACCAGC
GGGATCCATTAAGGGATCACGAGTTCTCAACTATTTCACCGCAAGTAATG
GATTTGCGTGGATTCCACCTCAAAGATCTAATTGCGTCACAAGATCCATT
TGCTGACTGCGTTGACCCGGAGATCGAAAAGAGGATACAAAACTACCTCT
GGACAAGCTTGCAGATGTATGTTCATTTTATTTATTTTTTTAACCCCCGG
GAGGCTGAGGCAAAAACCTTTTCCGCTGCTTCCACATTCAGGTATTCGCC
CAAACATGTCTACATTTCCTTTTCCTTTAACAGAACAGAGTTATTTATTC
CTCTGCGGGGTAGGCGCCACCCCGGTTCGGCCGAACCAAGTCGTCAGTGT
AGGAGTTTCACCTACTAAAAGACCTCTGACTAGACTCCCAGTCATGCTCA
GTACACGAGCTACCCTACCCGTTCGGGCGTAGGTCCGTGGATGTATGTTC
ATCTGCTAGCTAGTAACTGAAACATGGGAAAGCAGGAAGAATATCCAGCG
CGGTTGTAATGTGTCGTTCTTCGACGCCGTAGGTGCATTCTTGTTTAGTA
GAGAACGATGTAGGCGCCGTTCAACAGCTTGGTGATGTCCACCAAACTTC
GGCAGGGTTTGCTTCGGGCCTTAGCTTCTTGCAACACAGTTTGTCCCACG
GGAAGCTTCTACTACAATCTCCCGCCTACGCTGTACTACTACTCGCCACC
CTCCGACATGATTCTTCAATGATCTTCCCCTGTCTGGGCCCCCTGACACA
GCTTGGTGGCTCAGTACAGTTAGGGTTGCGCTTAGGTCTTCTATATTGCG
GTAATTGTGTCGCAAAGACCACGTAATTTTTCGCAAGGATCACGTGTTTT
ATGCCGGCTTTTTAGAGGGTTTGGGTTATGTAAGAAAACACACAACCATC
GAGAGACCCAGCGTAAGCTAAAGAAACAAAAAAATGATTAGTCTCGAAAG
AGGCAGGATATCACAAAAATACCAAAACGTGAACAACCCCGAAGAAGCCA
TCAGAAAGTCTGAGGAGCTACAGACAGAACAGAGAGACTGCTCCACATGC
GAGAGCTGCCTCTCACTGTCTCCCTCTGAGTGCAACATCAGTAGCATCTG
CGCACACAGCACGCACGGCATCCTACACCAGCCCGAGTAGACCGCATCCA
GTGGCCGGACGGCACTGGGAAAATGGCCGAGCACAAGCAAGAGCAGCCGC
TCCCGACCGCTCGCTCCTACTATACAGCAGTACAAGCAGCAGCAACGATG
GCACCTCCCACCACCTATGCAACATGCATTGGTTGTCTCCTGCATGTCCT
CCACATCGTCATGACGTCAGGGATGGAGAGTGAGTGCTTCATGGGCACCC
TTGGTACGGGATCTTGATATGAGTGGCCGCATCAACATTTTGTAGCGTTG
CTTGGTTCTGTCTGATGCAATACCAGCAGAAGCGACTCGTCAAATATCGG
ATGGTCTCAGATGAAGGGGTTGGTTTTCGCTAATGTCGGTGCGAGGTGGC
AGGAAAAGTTTGTGCGGCCCGCCGAAACGCGGTGCATGGTAATTTGGGAC
GGCGCGAGGCTTCTCGAGGAACGTTGGAATGCTTGCATGGCTGGTAGGAG
AATGGGCGCCGAAAAACCTGCTTGCTACGCCCTTCAGGAGCTATTGGTAT
AAATCGTACGACATGATAAATAATCCATCTATTCGCCTGCACGCGAAGTT
TGCCAACGAGCTGGCCTCGAAAAGATCATGTACTGGTGCAGCTCACAGCT
AGACGGTAAAAAGACCGAGCAAGCTAAGTTTCGAGTGTGTTGAGACCCTG
GGAATGTTGGTTATAACAATGGGTTACAACCATTGCAATATGCAACGCGA
ATTATGCCCCTACGACCACCCAATTTTTCCCTAACGACTAGATGGGGGCA
GAATATTTACGTCCGAAAAGGATGCCCTCTCCCGCACTTTAAATTCGAGT
AGTTTTTGGTGCTGTATTGGTGTTGGTGGGCCAGTTTAAATTCGAGTGGT
TTGGGATACTTGTCTGTGTTGATAGGCTATCTTGTGAATAAATGTACTTC
CCAGCAAGGTCGTCGATTGGGGTGTGGTTTTTTGCATCTTATGTATCTTT
GAAGTCATGAGGAAAAAGCTATCTTCACAGAGAAAATAGCAGAAGAAGCA
CTGTTTATTGGGGTGTTTGGAATTCTCACGATGCAGATTAAAAGTCCAAG
AAGATCAAGCCCTAGAATAGGCACATACCCAAGTGTGTGTTGAGCCTCAC
GAGCCAGTTCCTAACCTGTATGGAGTAATTCAGGTTACAAGTGCGTGGAA
ACCTGACACTGAATACAAGTACTTTGCGGGATGTAGGTATTAGTTGTCGA
GAGATAAACACTTTTTTTTTTCTTTATTCGGCGCTTTAATGTGTGGCCGT
TGTAACCAAAAATGGGCCTCAAATCGGTTATTAGGCGCACCACTAACAGT
GGATAACTGGTATTGCGCGAAACGCTGGATAATAACACAGTACATCGCTG
TTATCCCCCCCACGCGCGTAAAGCCCTCATGGTACTTTTGGGGGTGTGGT
TTAAAGCCCTGCATTGCAAATTTCACCGATTCTATTTGCATTCAAGAATC
GACCATTCTCCAACTTCAAGAGCGAGCTACACGATGTATATTTGAATGTG
AACGACACCACCCACACCTGAAGAACCCTCACAAGCGAGCTGTCATAATT
GATTCGGCGTGTGCCTCGCTCGGCTGTGTATCTCAGGAGGTCGAGAAGCT
CTGCAACGAGCTTGAGGCAAGGCGGGCCGGCCGCAAATCGAAACCATCAA
CCTGGAAATCATCAAGTGATGATTTCTGGGGCGGAGGAAAGTCGTCCTCA
GTAGCGCAGTCTTCATTGGCGCTATCTGGCGGTGCAGGCCAACAACCTAA
AGGTGTGGACCAGGGCAAGCGAAAAGCCAAAGGCAAACTCTACCAGAAGG
CGGCCGCCGAGGACTTTTGGGGGGGAGGTACAACTTCGGGAGCATCAGGA
AATTCGAAAAAGGCAGCAGCCCCGAAGACACCATCATCACGCGACCCAGC
CCCCGCTCCCCTTACAGCCGCGACTCGTCCCCCTCCTGCTACTGCTACTG
CGGAAAGCGTTCTTGGTGCTGCTACTCCCAAAACCGAACCTACATCTTCC
AAGAGTGCCAGCAAAATAAAGCGGGGTGCACCTACTCCTGGAGGGGCACG
TATGGACCCCGGCAGGGCACTACCCGCAGCTGTTGGAAAGAAGGGAAAGC
AGGGTAAGGCGTCCATGGGTGCTGGGGGCATGCAAGGAGGTGCGCCTGAA
TTGCGGCCAGGGGTAACGCCAACGGTAGATGAACCAACTCCAGAATGGTC
CGGCGTGACGTGTCTGTGCATGGCAATGCGGCACGATCTCCTGACAAATT
GCACTTCATGCGGCAAGATTGCGTGTGTGAATGAGGGCGGGTTCGGGTGC
TCGTTTTGTGGGTCGGCTCTTCCGGTGACAGGGCGCGAGCCTCGAAAAGT
GGGAGACCCCAAAATTGGGGGAAGGGGAAGAGGAGACGGAGGGTCGCAGC
AGTCGGAAGCGCTTAAGGAGGCCCTTGCCCGAAAGGAGAAGCTGCTTCTG
TTCGACCGAACGTCTGCGTCGCGCACCCGTGTACTGGATGACCAGGGCGA
CTACTTCACAAGCCACAATTGGCTTTCGCAAAAGGAGCGGGAGAAGGGTG
AGGCCGAGGAGAAGGCGCGGAGGGAGAATGAGGCGTTGCAACGCGGTTCA
AGAAGACAGGTGAAGCTGTCTATCGATATCATGGGGCGGAGGGTTATAGA
GACTCGGAGCGAGGGCGGGGTGGAAGACGATCAAGACGGGGGCCCAGAGG
CGGCGGTGGTCGAGGGAATCTCTCTCGATTTAGGGGCAACCAGTAGGCCC
TCTGGTGCCGGCAGCAGTTCCGGCGTCGGGAAGGGAGAAGCAGCCGATCG
CACTGTCATTACCGAAAATATATCAATCGGAAGTGAGGCACGAAAAGATC
AACGGCGTTCTCTGGAGAACACGGGCTTGCGAGGGCGCGCGAAGGAGGTC
TACGATGTTATGCGGGCAAATCTGGAGAAGGAAGGAAGGCGACAAGTCGG
CGGAAAAGGCAAGGCTGGAAAGAGCAGCGGTACTGTTGCAGATATTTCTC
GCCTTAGCCTGTGGCGGGTGCAGCATGATGTGACGCCTAAAGACAATTAG
TTGCCTTGTGCATACTAAATGCTCGCTTGGCACGATAGCATGCATGTGTT
ATGCATGACGGAGCGATCACCGGTTTTGAACCCTTCGGTCGGCGTCGTCG
ATGTTTGTTCCACCTACATCTCCAGTTCTATGAAACAAGACGTTTGTGAC
ACATCTCATTTCAAGCGAAGGGTAAGGTGATGAATGCCTCCGTGGAAGGT
AGACAGGCAGAGGTGGTGCCGAGATGCCTCCGACATTTGATGGTCGCATT
GCAATCTTGTCATCGGTTTAGATTTATCTTCCTATTACCCAGTATAATTT
TTCGGACCTTGTTCGTTGAAGAATGTACATTCTTTAGGGGATGGTTTACT
TAACTGGTACTTGCATCATCCTCGAGCGAAAGTGCGCCTTGGCTTCCTTT
ATCAATGATCTGATTAAACGAAACAATGAATATGTTTGTGTACCAATAAC
ACAAGAGCATTTAAACTATTAGTAATGTGACGTTGACATGTGCCTGTGAA
GATTTC
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Coding sequence (CDS) from alignment at H-paniculata_contig3013:2561..8266-

>mRNA_H-paniculata_contig3013.8175.1 ID=mRNA_H-paniculata_contig3013.8175.1|Name=mRNA_H-paniculata_contig3013.8175.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3252bp|location=Sequence derived from alignment at H-paniculata_contig3013:2561..8266- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTGACAATGGGACTCAACAATGGCTTGAGGGGGAGCTACGAAGAAT
GCTTGGTTTCAATGAGATGGGTGACAATGGGACTCAACAATGGCTTGAGG
GGGAGCTACGAAGAATGCTTGGTTTCAATGAGGTAGAAGAAATCGTGAGG
TTCGCCTTCGAGTCGTTCTCCGTGTCGCAGACTGTTGAACTCAGGCAGTA
TTTGGAGCAGTTTCTGGGCCAGTCCAAGGTAGAAGAAATCGTGAGGTTCG
CCTTCGAGTCGTTCTCCGTGTCGCAGACTGTTGAACTCAGGCAGTATTTG
GAGCAGTTTCTGGGCCAGTCCAAGGAGGTCGAGAAGCTCTGCAACGAGCT
TGAGGCAAGGCGGGCCGGCCGCAAATCGAAACCATCAACCTGGAAATCAT
CAAGTGATGATTTCTGGGGCGGAGGAAAGTCGTCCTCAGTAGCGCAGTCT
TCATTGGCGCTATCTGGCGGTGCAGGCCAACAACCTAAAGGTGTGGACCA
GGGCAAGCGAAAAGCCAAAGGCAAACTCTACCAGAAGGCGGCCGCCGAGG
ACTTTTGGGGGGGAGGTACAACTTCGGGAGCATCAGGAAATTCGAAAAAG
GCAGCAGCCCCGAAGACACCATCATCACGCGACCCAGCCCCCGCTCCCCT
TACAGCCGCGACTCGTCCCCCTCCTGCTACTGCTACTGCGGAAAGCGTTC
TTGGTGCTGCTACTCCCAAAACCGAACCTACATCTTCCAAGAGTGCCAGC
AAAATAAAGCGGGGTGCACCTACTCCTGGAGGGGCACGTATGGACCCCGG
CAGGGCACTACCCGCAGCTGTTGGAAAGAAGGGAAAGCAGGGTAAGGCGT
CCATGGGTGCTGGGGGCATGCAAGGAGGTGCGCCTGAATTGCGGCCAGGG
GTAACGCCAACGGTAGATGAACCAACTCCAGAATGGTCCGGCGTGACGTG
TCTGTGCATGGCAATGCGGCACGATCTCCTGACAAATTGCACTTCATGCG
GCAAGATTGCGTGTGTGAATGAGGGCGGGTTCGGGTGCTCGTTTTGTGGG
TCGGCTCTTCCGGTGACAGGGCGCGAGCCTCGAAAAGTGGGAGACCCCAA
AATTGGGGGAAGGGGAAGAGGAGACGGAGGGTCGCAGCAGTCGGAAGCGC
TTAAGGAGGCCCTTGCCCGAAAGGAGAAGCTGCTTCTGTTCGACCGAACG
TCTGCGTCGCGCACCCGTGTACTGGATGACCAGGGCGACTACTTCACAAG
CCACAATTGGCTTTCGCAAAAGGAGCGGGAGAAGGGTGAGGCCGAGGAGA
AGGCGCGGAGGGAGAATGAGGCGTTGCAACGCGGTTCAAGAAGACAGGTG
AAGCTGTCTATCGATATCATGGGGCGGAGGGTTATAGAGACTCGGAGCGA
GGGCGGGGTGGAAGACGATCAAGACGGGGGCCCAGAGGCGGCGGTGGTCG
AGGGAATCTCTCTCGATTTAGGGGCAACCAGTAGGCCCTCTGGTGCCGGC
AGCAGTTCCGGCGTCGGGAAGGGAGAAGCAGCCGATCGCACTGTCATTAC
CGAAAATATATCAATCGGAAGTGAGGCACGAAAAGATCAACGGCGTTCTC
TGGAGAACACGGGCTTGCGAGGGCGCGCGAAGGAGGTCTACGATGTTATG
CGGGCAAATCTGGAGAAGGAAGGAAGGCGACAAGTCGGCGGAAAAGGCAA
GGCTGGAAAGAGCAGCGGTACTGTTGCAGATATTTCTCGCCTTAGCCTGT
GGCGGGTGCAGCATGATGTGACGCCTAAAGACAATTAGGAGGTCGAGAAG
CTCTGCAACGAGCTTGAGGCAAGGCGGGCCGGCCGCAAATCGAAACCATC
AACCTGGAAATCATCAAGTGATGATTTCTGGGGCGGAGGAAAGTCGTCCT
CAGTAGCGCAGTCTTCATTGGCGCTATCTGGCGGTGCAGGCCAACAACCT
AAAGGTGTGGACCAGGGCAAGCGAAAAGCCAAAGGCAAACTCTACCAGAA
GGCGGCCGCCGAGGACTTTTGGGGGGGAGGTACAACTTCGGGAGCATCAG
GAAATTCGAAAAAGGCAGCAGCCCCGAAGACACCATCATCACGCGACCCA
GCCCCCGCTCCCCTTACAGCCGCGACTCGTCCCCCTCCTGCTACTGCTAC
TGCGGAAAGCGTTCTTGGTGCTGCTACTCCCAAAACCGAACCTACATCTT
CCAAGAGTGCCAGCAAAATAAAGCGGGGTGCACCTACTCCTGGAGGGGCA
CGTATGGACCCCGGCAGGGCACTACCCGCAGCTGTTGGAAAGAAGGGAAA
GCAGGGTAAGGCGTCCATGGGTGCTGGGGGCATGCAAGGAGGTGCGCCTG
AATTGCGGCCAGGGGTAACGCCAACGGTAGATGAACCAACTCCAGAATGG
TCCGGCGTGACGTGTCTGTGCATGGCAATGCGGCACGATCTCCTGACAAA
TTGCACTTCATGCGGCAAGATTGCGTGTGTGAATGAGGGCGGGTTCGGGT
GCTCGTTTTGTGGGTCGGCTCTTCCGGTGACAGGGCGCGAGCCTCGAAAA
GTGGGAGACCCCAAAATTGGGGGAAGGGGAAGAGGAGACGGAGGGTCGCA
GCAGTCGGAAGCGCTTAAGGAGGCCCTTGCCCGAAAGGAGAAGCTGCTTC
TGTTCGACCGAACGTCTGCGTCGCGCACCCGTGTACTGGATGACCAGGGC
GACTACTTCACAAGCCACAATTGGCTTTCGCAAAAGGAGCGGGAGAAGGG
TGAGGCCGAGGAGAAGGCGCGGAGGGAGAATGAGGCGTTGCAACGCGGTT
CAAGAAGACAGGTGAAGCTGTCTATCGATATCATGGGGCGGAGGGTTATA
GAGACTCGGAGCGAGGGCGGGGTGGAAGACGATCAAGACGGGGGCCCAGA
GGCGGCGGTGGTCGAGGGAATCTCTCTCGATTTAGGGGCAACCAGTAGGC
CCTCTGGTGCCGGCAGCAGTTCCGGCGTCGGGAAGGGAGAAGCAGCCGAT
CGCACTGTCATTACCGAAAATATATCAATCGGAAGTGAGGCACGAAAAGA
TCAACGGCGTTCTCTGGAGAACACGGGCTTGCGAGGGCGCGCGAAGGAGG
TCTACGATGTTATGCGGGCAAATCTGGAGAAGGAAGGAAGGCGACAAGTC
GGCGGAAAAGGCAAGGCTGGAAAGAGCAGCGGTACTGTTGCAGATATTTC
TCGCCTTAGCCTGTGGCGGGTGCAGCATGATGTGACGCCTAAAGACAATT
AG
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