mRNA_H-paniculata_contig30110.8171.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30110.8171.1
Unique NamemRNA_H-paniculata_contig30110.8171.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig30110.8171.1 vs. uniprot
Match: D7FLE7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLE7_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 2.730e-17
Identity = 41/48 (85.42%), Postives = 45/48 (93.75%), Query Frame = 1 
Query:    1 QVRRARPVASVNRGFEQQLRAYGATQCDVFAAHQMMLRVKAAMMYERR 144
            QVRRARPVASVNRGFEQQLRAYGA QCDVFAAHQMMLR++AA + +RR
Sbjct:  131 QVRRARPVASVNRGFEQQLRAYGAAQCDVFAAHQMMLRIRAAALLDRR 178
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BLAST of mRNA_H-paniculata_contig30110.8171.1 vs. uniprot
Match: A0A836CLF0_9STRA (Protein-tyrosine phosphatase-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLF0_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.240e-7
Identity = 27/47 (57.45%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    1 QVRRARPVASVNRGFEQQLRAYGATQCDVFAAHQMMLRVKAAMMYER 141
            Q++ ARPV ++NRGFE QLRAY AT  DVF +HQ+MLR + +   ER
Sbjct:  116 QLKAARPVVAINRGFELQLRAYEATGYDVFQSHQLMLRARVSQNTER 162
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BLAST of mRNA_H-paniculata_contig30110.8171.1 vs. uniprot
Match: A0A7S4DKV9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DKV9_HETAK)

HSP 1 Score: 50.4 bits (119), Expect = 6.840e-6
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    4 VRRARPVASVNRGFEQQLRAYGATQCDVFAAHQMMLR 114
            VR ARPVASVNRGFE+QLRAYG    D++ A Q +LR
Sbjct:   55 VRNARPVASVNRGFEEQLRAYGMMSYDIYRAQQYVLR 91
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BLAST of mRNA_H-paniculata_contig30110.8171.1 vs. uniprot
Match: K8YQU6_NANGC (Slingshot (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YQU6_NANGC)

HSP 1 Score: 47.8 bits (112), Expect = 3.530e-5
Identity = 22/39 (56.41%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    4 VRRARPVASVNRGFEQQLRAYGATQCDVFAAHQMMLRVK 120
            VR ARPV  +N+GFE QL+AY    CDV+ AHQ +LR++
Sbjct:   84 VRAARPVIQLNQGFEMQLQAYEDQACDVYRAHQQVLRIR 122
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BLAST of mRNA_H-paniculata_contig30110.8171.1 vs. uniprot
Match: A0A835Z9L3_9STRA (MAP kinase phosphatase with leucine-rich repeats protein 1-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9L3_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 3.600e-5
Identity = 22/39 (56.41%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:    4 VRRARPVASVNRGFEQQLRAYGATQCDVFAAHQMMLRVK 120
            +R  RPV ++N+GFEQQLRA+ AT+ D+F ++QMMLR +
Sbjct:  131 LRVVRPVVAINKGFEQQLRAFEATRFDLFKSNQMMLRAR 169
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BLAST of mRNA_H-paniculata_contig30110.8171.1 vs. uniprot
Match: W7TWT2_9STRA (Dual specificity protein phosphatase 9 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TWT2_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 6.160e-5
Identity = 22/39 (56.41%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    4 VRRARPVASVNRGFEQQLRAYGATQCDVFAAHQMMLRVK 120
            VR ARPV  +N+GFE QL+AY    CDV+ AHQ +LR++
Sbjct:  135 VRAARPVIQLNQGFEMQLQAYEDQACDVYRAHQQVLRIR 173
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30110.8171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FLE7_ECTSI2.730e-1785.42Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CLF0_9STRA1.240e-757.45Protein-tyrosine phosphatase-like protein (Fragmen... [more]
A0A7S4DKV9_HETAK6.840e-667.57Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
K8YQU6_NANGC3.530e-556.41Slingshot (Fragment) n=1 Tax=Nannochloropsis gadit... [more]
A0A835Z9L3_9STRA3.600e-556.41MAP kinase phosphatase with leucine-rich repeats p... [more]
W7TWT2_9STRA6.160e-556.41Dual specificity protein phosphatase 9 n=2 Tax=Nan... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30110contigH-paniculata_contig30110:719..862 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.3
Seed ortholog evalue1.6e-14
Seed eggNOG ortholog2880.D7FLE7
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.phosphatase
EggNOG OGsCOG2453@1,KOG1716@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size144
Cds size144
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929924.8891122-CDS-H-paniculata_contig30110:718..8621622929924.8891122-CDS-H-paniculata_contig30110:718..862Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30110 719..862 +
1691481071.996776-CDS-H-paniculata_contig30110:718..8621691481071.996776-CDS-H-paniculata_contig30110:718..862Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30110 719..862 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30110.8171.1prot_H-paniculata_contig30110.8171.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30110 719..862 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30110.8171.1

>prot_H-paniculata_contig30110.8171.1 ID=prot_H-paniculata_contig30110.8171.1|Name=mRNA_H-paniculata_contig30110.8171.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=48bp
QVRRARPVASVNRGFEQQLRAYGATQCDVFAAHQMMLRVKAAMMYERR
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mRNA from alignment at H-paniculata_contig30110:719..862+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30110.8171.1 ID=mRNA_H-paniculata_contig30110.8171.1|Name=mRNA_H-paniculata_contig30110.8171.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=144bp|location=Sequence derived from alignment at H-paniculata_contig30110:719..862+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTCCGACGAGCCCGCCCCGTGGCCTCCGTAAATCGAGGGTTCGAGCA
GCAGCTACGAGCGTACGGTGCCACGCAATGCGACGTGTTCGCCGCTCACC
AGATGATGCTTCGCGTTAAGGCGGCGATGATGTACGAGCGAAGA
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Coding sequence (CDS) from alignment at H-paniculata_contig30110:719..862+

>mRNA_H-paniculata_contig30110.8171.1 ID=mRNA_H-paniculata_contig30110.8171.1|Name=mRNA_H-paniculata_contig30110.8171.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=288bp|location=Sequence derived from alignment at H-paniculata_contig30110:719..862+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTCCGACGAGCCCGCCCCGTGGCCTCCGTAAATCGAGGGTTCGAGCA
GCAGCTACGAGCGTACGGTGCCACGCAATGCGACGTGTTCGCCGCTCACC
AGATGATGCTTCGCGTTAAGGCGGCGATGATGTACGAGCGAAGACAGGTC
CGACGAGCCCGCCCCGTGGCCTCCGTAAATCGAGGGTTCGAGCAGCAGCT
ACGAGCGTACGGTGCCACGCAATGCGACGTGTTCGCCGCTCACCAGATGA
TGCTTCGCGTTAAGGCGGCGATGATGTACGAGCGAAGA
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