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Homology
BLAST of mRNA_H-paniculata_contig301.8169.1 vs. uniprot
Match: A0A6H5L0J7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0J7_9PHAE) HSP 1 Score: 108 bits (269), Expect = 4.710e-23 Identity = 51/95 (53.68%), Postives = 67/95 (70.53%), Query Frame = 2
Query: 104 LVTNVDIISMLAELMEDTQYLFFTSVTKAWRNAWGQQRPHLTRAVTPHSTVSQLRESFECGLARTPNVCAATAGIGKLDLLQFARETGCPWNLQT 388
L VDI+S +AE ++D QYLFF SV++ WR+ WG+ RP +T+A+T ++V QL SFECGL RT VC AG+G+LDLL+ AR GC WN T
Sbjct: 3 LFAAVDIVSTVAEFVDDNQYLFFASVSRGWRDVWGK-RPTVTKALTADTSVPQLSLSFECGLRRTAAVCETVAGLGRLDLLRRARAMGCQWNENT 96
BLAST of mRNA_H-paniculata_contig301.8169.1 vs. uniprot
Match: D8LDD9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDD9_ECTSI) HSP 1 Score: 92.0 bits (227), Expect = 6.490e-17 Identity = 47/100 (47.00%), Postives = 64/100 (64.00%), Query Frame = 2
Query: 92 MEHPLVTNVDIISMLAELMEDTQYLFFTSVTKAWRNAWGQQRPHLTRAVTPHSTVSQLRESFECGLARTPN-VCAATAGIGKLDLLQFARETGCPWNLQT 388
M +P D+IS +E + D Q+LFF SV++AWR AW + RP TRA+TP ++ SQLR S +CGL+ VC A A +G+LDLL+ AR G W+ T
Sbjct: 1 MGNPFQATADVISHASEFVHDDQFLFFASVSRAWRGAW-RGRPTSTRAITPDTSPSQLRHSVDCGLSPGGTAVCTAIASLGRLDLLRAARALGFRWDKMT 99
BLAST of mRNA_H-paniculata_contig301.8169.1 vs. uniprot
Match: A0A6H5KPZ6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ6_9PHAE) HSP 1 Score: 91.7 bits (226), Expect = 8.480e-17 Identity = 47/93 (50.54%), Postives = 62/93 (66.67%), Query Frame = 2
Query: 104 LVTNVDIISMLAELMEDTQYLFFTSVTKAWRNAWGQQRPHLTRAVTPHSTVSQLRESFECGLART-PNVCAATAGIGKLDLLQFARETGCPWN 379
L NVD++ + + + Q+LFF V++AWR AWG RP +T VT S+VSQLR SFE GL R P +CAA A +G L+LL+ AR +GC WN
Sbjct: 57 LADNVDLLRSIVRFVAEKQFLFFAPVSRAWREAWGC-RPAVTSWVTEDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSGCAWN 148
BLAST of mRNA_H-paniculata_contig301.8169.1 vs. uniprot
Match: D7FH77_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FH77_ECTSI) HSP 1 Score: 88.2 bits (217), Expect = 1.500e-15 Identity = 43/96 (44.79%), Postives = 57/96 (59.38%), Query Frame = 2
Query: 104 LVTNVDIISMLAELMEDTQYLFFTSVTKAWRNAWGQQRPHLTRAVTPHSTVSQLRESFECGLART-PNVCAATAGIGKLDLLQFARETGCPWNLQT 388
++ N DI+ L + D +LFF V + WR AWG RP TR T T +QL+ F+CGL RT P +CAA A +G +DLL+ AR+ GC W T
Sbjct: 9 VLNNPDILGCLISFVADESFLFFGPVCRDWRAAWGN-RPTTTRIATSDLTPTQLQRGFDCGLTRTNPELCAAIARLGDVDLLELARDNGCRWGAST 103
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 75.9 |
| Seed ortholog evalue | 4.8e-11 |
| Seed eggNOG ortholog | 2880.D7FJY0 |
| KEGG ko | ko:K06052 |
| KEGG Pathway | ko01522,ko04330,ko04371,ko04658,ko04668,ko05165,ko05200,ko05224,map01522,map04330,map04371,map04658,map04668,map05165,map05200,map05224 |
| Hectar predicted targeting category | other localisation |
| EggNOG OGs | 2AMK4@1,2RZCC@2759 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko04090 |
| Exons | 2 |
| Model size | 1898 |
| Cds size | 1179 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig301.8169.1 >prot_H-paniculata_contig301.8169.1 ID=prot_H-paniculata_contig301.8169.1|Name=mRNA_H-paniculata_contig301.8169.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=393bp
MEHPLVTNVDIISMLAELMEDTQYLFFTSVTKAWRNAWGQQRPHLTRAVT
PHSTVSQLRESFECGLARTPNVCAATAGIGKLDLLQFARETGCPWNLQTC
TMAALGGHLTSLQWARQNGCSWDESTCAAAARGRHLSVLRWARENGCLWD
WRTCYNSAQMGDLAILTWARENGCPWAEDTCAAAAWGGHLHVIQWAREHG
CPWNRRVCEKAALGGHLNVLQWARETNCLETSWSICCYAAYGGHLDVVQW
ARANGCSWCLMTTWKAAEGGHLRVFKWALANGCTMDNNTCAVAAKGGHLD
VIRWAFDNGCPLKQNTCIAAAKGGHLEILRWACEKGLPWDKNICKIAACR
GHLHILVWARANGFPWEDNIFPAAAAGKHDHIIQWARGILQP* back to topmRNA from alignment at H-paniculata_contig301:26569..29457+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig301.8169.1 ID=mRNA_H-paniculata_contig301.8169.1|Name=mRNA_H-paniculata_contig301.8169.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2889bp|location=Sequence derived from alignment at H-paniculata_contig301:26569..29457+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTTTCTCATCTTTGTTCCGAAAAGTTGGTGTGCTTTCATGGATACTCAT
ATAAGCACAGGATAATCTGGCGACTTCAGCCGGTGAGGGCTAATCTTGAA
TATTTTCCATGATAGCTTATTCTTCTTGGAGAGGAGAGGCCGCTAATGAC
TTCGTTGAATGCATACTGAGTTGTTGTTCCAGAAATATGGTTCTCTAGGA
TAGGATGAACAATCTCCTCTCCGATCCGGTACATATCGCCCTACATACCG
TCTGTACACCTCTGAACTGGCTGTGCCGTCTAACCAACAGTAAACAGTAA
TTTACTCTGGCGGCACTCTACTACGATGCACCTCTTACGAAACTCACAAA
TGAAGCGACAGCAGGTGTAGCCGTCGGTAGGTGGGATGATGTATCGAAGT
AATTTTCCGCGAAGAAGACTCATTTGCACACTCTGCATTCCTGTTGACAC
TAAGACACCGACCCAAGGCCAAGGAACACAGAACACACCGCATTTTTCTT
CACCTTGCAACAAAATCTTCTGGTGGCTCCAAAACATTTTCGGCCACAAG
CCGCCGAAAGTCCGTCACAACGCCGGTGAAAACCCCCCAATTTCACATTT
TTACGGCTATATCATGCGAATTCGTGCACCATATGATACCCTGTTATGTA
CTGTGTCTGTACGAGTCCGGTAGCTCGTACAAGCATTTTTGTTTGGAAAA
TGGAAATTAGGGCTTAACGCCTGGATATAAGCAGTCTATTTATCGTAGCT
CCTTTCACGCCCATCCTGACTTGATCTCAACCGCCCCGACCCAAACCGGT
GACAATAAGCAGCGAACCCGTAGACTATAGTGTGCATTGGCAAGGCGAAA
ATCTGACCGAGCTGATGTGACAAAGCTCAGTTTAGATCTTTGGTCGCTGA
ATTTTTGTACCTGTTTGTGGCACAGAGTGGTCTTTCGCCCTGAATATTTC
TGCTATTGCAAAGTCCCTTTGGCAGAGCTGAGGATGGTCGGCAATTTGAC
CCCGTCCGCATCGTTGGAAAATGGCCATATTCCATGTTGTTTACCCCTCC
AAAATTCCCTGCCCGAACAGCAGAAGCTTAGCATGGAGCACCCCCTTGTG
ACTAATGTGGACATCATCAGCATGCTGGCCGAGCTGATGGAGGACACACA
GTACCTGTTTTTCACTTCAGTGACGAAGGCTTGGAGAAACGCTTGGGGAC
AGCAGCGCCCTCATCTCACCAGGGCGGTAACGCCACACTCCACGGTTTCT
CAGCTGCGAGAGAGCTTTGAATGTGGACTGGCTCGTACCCCAAACGTTTG
CGCCGCCACCGCGGGCATTGGCAAACTTGACCTCCTGCAATTTGCGCGAG
AAACAGGATGCCCTTGGAATTTGCAAACATGCACAATGGCTGCTCTCGGG
GGGCATCTAACCTCGCTGCAGTGGGCGCGCCAAAACGGGTGCAGCTGGGA
CGAGAGCACGTGCGCGGCGGCTGCCAGAGGGAGACACTTGAGCGTCCTTC
GGTGGGCAAGGGAGAATGGCTGTCTCTGGGACTGGAGGACGTGCTACAAT
TCCGCACAGATGGGTGATTTAGCCATCCTTACTTGGGCGCGGGAGAATGG
ATGCCCTTGGGCTGAAGATACTTGTGCAGCAGCGGCCTGGGGTGGCCATT
TACACGTGATACAATGGGCGAGAGAGCACGGCTGTCCTTGGAACCGGCGC
GTGTGTGAGAAGGCTGCTCTCGGAGGACATCTGAACGTTCTCCAGTGGGC
TAGGGAAACAAACTGCCTGGAGACTTCATGGTCAATCTGCTGCTATGCTG
CGTACGGAGGGCACTTAGACGTTGTGCAGTGGGCACGTGCAAACGGCTGC
TCCTGGTGCTTGATGACGACCTGGAAGGCTGCCGAGGGAGGGCATCTTCG
CGTTTTTAAGTGGGCATTGGCGAACGGTTGCACAATGGACAACAATACTT
GTGCAGTGGCGGCAAAGGGGGGACATTTGGACGTCATTCGGTGGGCGTTT
GATAATGGCTGTCCGTTGAAGCAGAACACGTGCATAGCAGCTGCCAAGGG
CGGACATTTGGAAATTTTGCGGTGGGCGTGCGAGAAGGGGCTTCCGTGGG
ACAAGAATATTTGCAAAATTGCAGCATGTAGAGGACATCTTCATATTCTG
GTGTGGGCGCGGGCGAACGGCTTCCCTTGGGAAGACAACATTTTTCCGGC
GGCGGCTGCTGGAAAGCATGACCACATTATACAGTGGGCACGGGGAATCT
TACAGCCATGATTGGGTGGGCACCAAAATATGCGTTAATCGGAAATGGGA
GAGATAACTTCCCCAATTCGAGCTATGGAACAAAATAATGTTGGGAAGAT
TGTTATTGGACAACACCGTGTAAATAGTGTCAACGGCGGGGAGGAAAGAA
TAGACATTGTTGAAACAAAAGTTGGCAATATGAGTTGAAGGAGCCTCCAA
CGGGGTGCCGCTGCTTTTGCGAGGAGGTCTACTTGTTGGGGACGATGCAT
AGTTTCGATTAAATCGTTTGATCTTCACGGTTATTATTTCAGCCATGTGC
GCCCCATCGTAACTGGTGTAGTTCTTGCATACCAGATAGTTTTATTTTAT
TGCCTTGTTGCCGATGACCACATGAAGGTAGAATAGCGGTGCTACGAGTG
AGGTACAATTATAAGTAATACTCGGCAAACAAAGCAATACATCGTGTCCC
GTGGGGGTGTCCACCTCACTCAGTTCCTCAACATGGCAAATGATGAAGCG
ATGTTGGCTGGTTCAAAGAAACGCACCCGAGTTTTTTTACATGCAGTAGC
CTTGTTGAGAAAGTTTAGGGAGATCAGGATGGTTGTCTAGAGGAGGTTGT
GTAGAGTTCGATACCCGAGAGATGTATTTGTAAGCCGGT back to topCoding sequence (CDS) from alignment at H-paniculata_contig301:26569..29457+ >mRNA_H-paniculata_contig301.8169.1 ID=mRNA_H-paniculata_contig301.8169.1|Name=mRNA_H-paniculata_contig301.8169.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2358bp|location=Sequence derived from alignment at H-paniculata_contig301:26569..29457+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGCACCCCCTTGTGACTAATGTGGACATCATCAGCATGCTGGCCGA
GCTGATGGAGGACACACAGTACCTGTTTTTCACTTCAGTGACGAAGGCTT
GGAGAAACGCTTGGGGACAGCAGCGCCCTCATCTCACCAGGGCGGTAACG
CCACACTCCACGGTTTCTCAGCTGCGAGAGAGCTTTGAATGTGGACTGGC
TCGTACCCCAAACGTTTGCGCCGCCACCGCGGGCATTGGCAAACTTGACC
TCCTGCAATTTGCGCGAGAAACAGGATGCCCTTGGAATTTGCAAACATGC
ACAATGGCTGCTCTCGGGGGGCATCTAACCTCGCTGCAGTGGGCGCGCCA
AAACGGGTGCAGCTGGGACGAGAGCACGTGCGCGGCGGCTGCCAGAGGGA
GACACTTGAGCGTCCTTCGGTGGGCAAGGGAGAATGGCTGTCTCTGGGAC
TGGAGGACGTGCTACAATTCCGCACAGATGGGTGATTTAGCCATCCTTAC
TTGGGCGCGGGAGAATGGATGCCCTTGGGCTGAAGATACTTGTGCAGCAG
CGGCCTGGGGTGGCCATTTACACGTGATACAATGGGCGAGAGAGCACGGC
TGTCCTTGGAACCGGCGCGTGTGTGAGAAGGCTGCTCTCGGAGGACATCT
GAACGTTCTCCAGTGGGCTAGGGAAACAAACTGCCTGGAGACTTCATGGT
CAATCTGCTGCTATGCTGCGTACGGAGGGCACTTAGACGTTGTGCAGTGG
GCACGTGCAAACGGCTGCTCCTGGTGCTTGATGACGACCTGGAAGGCTGC
CGAGGGAGGGCATCTTCGCGTTTTTAAGTGGGCATTGGCGAACGGTTGCA
CAATGGACAACAATACTTGTGCAGTGGCGGCAAAGGGGGGACATTTGGAC
GTCATTCGGTGGGCGTTTGATAATGGCTGTCCGTTGAAGCAGAACACGTG
CATAGCAGCTGCCAAGGGCGGACATTTGGAAATTTTGCGGTGGGCGTGCG
AGAAGGGGCTTCCGTGGGACAAGAATATTTGCAAAATTGCAGCATGTAGA
GGACATCTTCATATTCTGGTGTGGGCGCGGGCGAACGGCTTCCCTTGGGA
AGACAACATTTTTCCGGCGGCGGCTGCTGGAAAGCATGACCACATTATAC
AGTGGGCACGGGGAATCTTACAGCCATGAATGGAGCACCCCCTTGTGACT
AATGTGGACATCATCAGCATGCTGGCCGAGCTGATGGAGGACACACAGTA
CCTGTTTTTCACTTCAGTGACGAAGGCTTGGAGAAACGCTTGGGGACAGC
AGCGCCCTCATCTCACCAGGGCGGTAACGCCACACTCCACGGTTTCTCAG
CTGCGAGAGAGCTTTGAATGTGGACTGGCTCGTACCCCAAACGTTTGCGC
CGCCACCGCGGGCATTGGCAAACTTGACCTCCTGCAATTTGCGCGAGAAA
CAGGATGCCCTTGGAATTTGCAAACATGCACAATGGCTGCTCTCGGGGGG
CATCTAACCTCGCTGCAGTGGGCGCGCCAAAACGGGTGCAGCTGGGACGA
GAGCACGTGCGCGGCGGCTGCCAGAGGGAGACACTTGAGCGTCCTTCGGT
GGGCAAGGGAGAATGGCTGTCTCTGGGACTGGAGGACGTGCTACAATTCC
GCACAGATGGGTGATTTAGCCATCCTTACTTGGGCGCGGGAGAATGGATG
CCCTTGGGCTGAAGATACTTGTGCAGCAGCGGCCTGGGGTGGCCATTTAC
ACGTGATACAATGGGCGAGAGAGCACGGCTGTCCTTGGAACCGGCGCGTG
TGTGAGAAGGCTGCTCTCGGAGGACATCTGAACGTTCTCCAGTGGGCTAG
GGAAACAAACTGCCTGGAGACTTCATGGTCAATCTGCTGCTATGCTGCGT
ACGGAGGGCACTTAGACGTTGTGCAGTGGGCACGTGCAAACGGCTGCTCC
TGGTGCTTGATGACGACCTGGAAGGCTGCCGAGGGAGGGCATCTTCGCGT
TTTTAAGTGGGCATTGGCGAACGGTTGCACAATGGACAACAATACTTGTG
CAGTGGCGGCAAAGGGGGGACATTTGGACGTCATTCGGTGGGCGTTTGAT
AATGGCTGTCCGTTGAAGCAGAACACGTGCATAGCAGCTGCCAAGGGCGG
ACATTTGGAAATTTTGCGGTGGGCGTGCGAGAAGGGGCTTCCGTGGGACA
AGAATATTTGCAAAATTGCAGCATGTAGAGGACATCTTCATATTCTGGTG
TGGGCGCGGGCGAACGGCTTCCCTTGGGAAGACAACATTTTTCCGGCGGC
GGCTGCTGGAAAGCATGACCACATTATACAGTGGGCACGGGGAATCTTAC
AGCCATGA back to top
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