mRNA_H-paniculata_contig3008.8164.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3008.8164.1 vs. uniprot
Match: D8LN55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN55_ECTSI) HSP 1 Score: 489 bits (1259), Expect = 1.490e-158 Identity = 235/394 (59.64%), Postives = 300/394 (76.14%), Query Frame = 1
Query: 475 RRLMTPTMGVLGISYDLKDHEGLDRAEGGAPKDSVITEGTVGTPPVWDSTLCMHHWGVPQLQEEIDPNGYLIYVSGREQLGGNKYLVSDGLFIAKSLGRTFVEYPVKDARVSSFGEAEIGLGAYWDLSELCMYHRILDLSTFRTMVSTGVIPGDDIVTLTSDTHEFMMNRLQSEEDIKRFFKEY-KSKVIVLEYTWKSGLKREPLEFLRPNAFYMGVVRMLLEEQKDWDLGNFIAVQWRTETATGDLDDCYQQLKRVIEEQREALGLGTHQVLFNTDLYGQTSGTYADHDKDRARDVLASIMVDYPEALDNKLHKFFIDTEDAGVRAFVSGLAVASARVMIASSLNDHDTSYMAEALECQKPYSGYIHLIAEWRNEITYKDPDTTINVWPIEVP 1653
R L T+G +G S+D++++ P++ +TEGT+ TPP WDSTLCM HWGVP+LQ+E DPNGY++YV+GREQLGGNK+LV+DG+F+AK+LGRTFVEYPVKDARV+ +A IGLGAYWDLSELCMYHRILDL++FR M++ G IP + T+ SDTHE ++ EE I FK+ K +VI +E TWKSG +RE L+FLRPN F++G+VRMLLE QKDW+ G F+AVQWRTE A GDL +CY+++K ++EEQR ALG GTHQVLFNTDLYG+TSGTY + VL I DYP+AL N+LH FF + +D+GVRAFVSGLAVAS++VMI SSLND T + +A C+KPYSGYI LI EWR EI +K+P+T + ++P E P
Sbjct: 51 RHLPEITVGTVGESFDVREN-----GASAGPQEQPLTEGTLATPPAWDSTLCMAHWGVPELQDEPDPNGYVVYVNGREQLGGNKFLVTDGIFMAKALGRTFVEYPVKDARVAKLEDASIGLGAYWDLSELCMYHRILDLTSFRNMMADGRIPPEAFTTIRSDTHEVLLRHATDEEHIVDMFKDSDKYQVIAMESTWKSGKEREALQFLRPNPFFVGIVRMLLEAQKDWETGEFVAVQWRTELANGDLTECYKEVKALVEEQRVALGYGTHQVLFNTDLYGKTSGTYKASAQAHGAAVLDLINDDYPQALHNELHHFFTEIDDSGVRAFVSGLAVASSQVMIGSSLNDPRTKDIPDAYRCEKPYSGYITLITEWREEILHKEPETVVRMFPFEYP 439
BLAST of mRNA_H-paniculata_contig3008.8164.1 vs. uniprot
Match: A0A6H5JCA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCA8_9PHAE) HSP 1 Score: 490 bits (1261), Expect = 5.000e-157 Identity = 235/394 (59.64%), Postives = 302/394 (76.65%), Query Frame = 1
Query: 475 RRLMTPTMGVLGISYDLKDHEGLDRAEGGAPKDSVITEGTVGTPPVWDSTLCMHHWGVPQLQEEIDPNGYLIYVSGREQLGGNKYLVSDGLFIAKSLGRTFVEYPVKDARVSSFGEAEIGLGAYWDLSELCMYHRILDLSTFRTMVSTGVIPGDDIVTLTSDTHEFMMNRLQSEEDIKRFFKEY-KSKVIVLEYTWKSGLKREPLEFLRPNAFYMGVVRMLLEEQKDWDLGNFIAVQWRTETATGDLDDCYQQLKRVIEEQREALGLGTHQVLFNTDLYGQTSGTYADHDKDRARDVLASIMVDYPEALDNKLHKFFIDTEDAGVRAFVSGLAVASARVMIASSLNDHDTSYMAEALECQKPYSGYIHLIAEWRNEITYKDPDTTINVWPIEVP 1653
R+L T+G +G S+D++++ P++ +TEGT+ TPP WDSTLCM HWGVP+LQ+E DPNGY++YV+GREQLGGNK+LVSDG+F+AK+LGRTFVEYPVKDARV+ EA IGLGAYWDLSELCMYHRILDL++FR M+ G IP + T+ SD+HE ++ EE + FK+Y K +VIV+E TWKSG +R+ L+FLRPN F++G+VRMLLE QKDW+ G F+AVQWRTE + G+L +CYQ++K ++EEQR ALG GTHQVLFNTDLYG+TSGTY + VL I DYP AL N+LH+FF + +D+GVRAFVSGLAVAS++VMI SSLND T + +A C+KPYSGYI LI EWR EI +K+P+T + ++P E P
Sbjct: 176 RQLPEITVGTVGESFDVREN-----GASAGPQEQALTEGTLATPPAWDSTLCMAHWGVPELQDEPDPNGYVVYVNGREQLGGNKFLVSDGIFMAKALGRTFVEYPVKDARVAKLEEASIGLGAYWDLSELCMYHRILDLNSFRNMMVDGRIPPEAFTTIRSDSHEVLLYHATDEEHMVDMFKDYEKYQVIVMESTWKSGNERDALQFLRPNPFFVGIVRMLLEAQKDWETGEFVAVQWRTELSNGNLTECYQEVKALVEEQRVALGYGTHQVLFNTDLYGKTSGTYKASAQAHGAAVLDLINHDYPHALHNELHQFFTEIDDSGVRAFVSGLAVASSQVMIGSSLNDPRTKDILDAYRCEKPYSGYITLITEWREEILHKEPETVVRMFPFEYP 564
BLAST of mRNA_H-paniculata_contig3008.8164.1 vs. uniprot
Match: A0A6H5KP62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP62_9PHAE) HSP 1 Score: 275 bits (704), Expect = 6.810e-78 Identity = 142/332 (42.77%), Postives = 211/332 (63.55%), Query Frame = 1
Query: 604 PPVWDSTLCMHHWGVPQLQEEIDPNGYLIYVSGREQLGGNKYLVSDGLFIAKSLGRTFVEYPVKDARVSSFGEAEIGLGAYWDLSELCMYHRILDLSTFRTMVSTGVIPGDDIVTLTSDTHEF-MMNRLQSEEDIKRFFKEYK-SKVIVLEYTWKSGLKREPLEFLRPNAFYMGVVRMLLEEQKDWDLGNFIAVQWRTETATGDLDDCYQQLKRVIEEQREALGLGTHQVLFNTDLYGQTSGTYADHDKDRARDVLASIMVDYPEALDNKLHKFFIDTEDAGVRAFVSGLAVASARVMIASSLNDHDTSYMAEALECQKPYSGYIHLIAEWR 1593
PP W S CM WGVP L E DP GYLI+V+GREQLG N+YL+SDGL+IAK+L RT VE+PV +AR+S ++++G GAYW L LC YHRIL L FR+++ G + + + +T M+ L++ +D++ F Y+ S+VIV+ WKS ++REPL+ ++P FY + R L+++Q+ W+ F+AVQWRTET+TG+L CY ++ +E RE G QV FNTDL +SGTY+ + VLA I DYP A+++ + + + ED GV++ SG+ A ARV++AS+ + ++ CQK +S ++ L+ E+R
Sbjct: 119 PPEWSSADCMKRWGVPWLLTEPDPAGYLIFVNGREQLGSNRYLLSDGLYIAKTLNRTLVEFPVANARISR-ADSDLGFGAYWGLDSLCRYHRILGLGAFRSLIEAGRLDVEKFLVMTPVRPSADPMSTLKTAKDVREAFGGYEDSQVIVMNDQWKSNIRREPLKLIKPLPFYENLARRLIDQQQGWENEAFLAVQWRTETSTGNLTACYGHVREAVERYREQEGFDRGQVFFNTDLTPHSSGTYSSQQLAVKQQVLAMIDEDYPSAMNSTVTAYLDNLEDTGVQSLTSGVVAALARVLLASTKRKW---WWSQRGVCQKIHSHFVDLVVEFR 446
BLAST of mRNA_H-paniculata_contig3008.8164.1 vs. uniprot
Match: D8LFR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFR0_ECTSI) HSP 1 Score: 274 bits (700), Expect = 2.500e-77 Identity = 142/332 (42.77%), Postives = 208/332 (62.65%), Query Frame = 1
Query: 604 PPVWDSTLCMHHWGVPQLQEEIDPNGYLIYVSGREQLGGNKYLVSDGLFIAKSLGRTFVEYPVKDARVSSFGEAEIGLGAYWDLSELCMYHRILDLSTFRTMVSTGVIPGDDIVTLTSDTHEF-MMNRLQSEEDIKRFFKEYK-SKVIVLEYTWKSGLKREPLEFLRPNAFYMGVVRMLLEEQKDWDLGNFIAVQWRTETATGDLDDCYQQLKRVIEEQREALGLGTHQVLFNTDLYGQTSGTYADHDKDRARDVLASIMVDYPEALDNKLHKFFIDTEDAGVRAFVSGLAVASARVMIASSLNDHDTSYMAEALECQKPYSGYIHLIAEWR 1593
PP W S CM WGVP L E DP GY+I+V+GREQLG N+YL+SDGL+IAK+L RT VE+PV +AR+S ++++G GAYWDL LC YHRIL L FR+++ G + + + +T M+ L++ +D++ F Y+ S+VIV+ WKS ++R PL+ +RP FY + R L+++Q+ W+ F+AVQWRTET+TG+L CY ++ +E RE G QV FNTDL +SGTY+ VLA I DYP A++N + + + ED GV++ SG+ A RV++AS+ + + CQK +S ++ L+ E+R
Sbjct: 121 PPEWGSAGCMKRWGVPWLLTEPDPAGYIIFVNGREQLGSNRYLLSDGLYIAKTLNRTLVEFPVANARISR-ADSDLGFGAYWDLDSLCQYHRILGLGAFRSLIEAGRLDVEKFLVMTPVRPSADPMSTLRTAKDVREAFGGYEDSQVIVMNGQWKSNIRRYPLKLIRPLPFYENLARRLIDQQQGWENEAFLAVQWRTETSTGNLTACYGHVREAVERYREQEGFDRGQVFFNTDLMPHSSGTYSSQQLAVKLQVLAMIDEDYPSAMNNTVTAYLDNLEDTGVQSLTSGVVAALPRVLLASTERKW---WWSRRGVCQKIHSHFVDLVVEFR 448
BLAST of mRNA_H-paniculata_contig3008.8164.1 vs. uniprot
Match: D7G2V9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2V9_ECTSI) HSP 1 Score: 209 bits (531), Expect = 1.910e-56 Identity = 114/278 (41.01%), Postives = 173/278 (62.23%), Query Frame = 1
Query: 790 VKDARVSSFGEAEIGLGAYWDLSELCMYHRILDLSTFRTMVSTGVIPGDDIVT-LTSDTHEFMMNRLQSEEDIKRFFKEYKS-KVIVLEYTWKSGLKREPLEFLRPNAFYMGVVRMLLEEQKDWDLGNFIAVQWRTETATGDLDDCYQ-QLKRVIEEQREALGLGTHQVLFNTDLYGQTSGTYADHDKDRARDVLASIMVDYPEALDNKLHKFFIDTEDAGVRAFVSGLAVASARVMIASSLNDHDTSYMAEALECQKPYSGYIHLIAEWRNEITYKD 1614
++ +R+S+ +A++G Y+D LC YHRILDL FR ++ ++ +D +T L+++ + ++ L + +I FF+EY +VIV++ WKS L+REP++ LRPN Y+ V L+E Q+ W G F++VQWRTET+TG+L +CY ++ +EE+R +LG QV FNTDL G+TS TY V+ +I DYP A+DN ++ D DAGV+A +SGL ASA ++ SS N ++ ECQKP+S YI L+ +WR E+ KD
Sbjct: 1 MQHSRIST-ADADLGSCDYFDCERLCSYHRILDLWAFRALLRDRLLSAEDFLTVLSAEWEQTLLPSLVTAGNITSFFEEYDQWQVIVMKMAWKSALRREPVDLLRPNPLYLDSVGQLIEAQEGWKDGGFLSVQWRTETSTGNLTECYGLHVRSAVEERRLSLGFSRSQVFFNTDLVGETSTTYNATVVSANNGVVDAIRGDYPCAMDNTVYDILNDERDAGVKAIISGLISASADFLLTSSFNGTGSN------ECQKPHSKYIDLVTDWRLEVVGKD 271
BLAST of mRNA_H-paniculata_contig3008.8164.1 vs. uniprot
Match: A0A6H5JD38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD38_9PHAE) HSP 1 Score: 211 bits (537), Expect = 2.380e-56 Identity = 125/358 (34.92%), Postives = 186/358 (51.96%), Query Frame = 1
Query: 604 PPVWDSTLCMHHWGVPQLQEEIDPNGYLIYVSGREQLGGNKYLVSDGLFIAKSLGRTFVEYPVKDARVSSFGEAEIGLGAYWDLSELCMYHRILDLSTFRTMVSTGVIPGDDIVT-LTSDTHEFMMNRLQSEEDIKRFFKEYKSKVIVLEYTWKS-GLKREPLEFLRPNAFYMGVVRMLLEEQKDWDLGNFIAVQWRTETATGDLDDCYQ-QLKRVIEEQREALGLGTHQVLFNTDLYGQTSGTYADHDKDRARDVLASIMVDYPEALDNKLHKFFIDTEDAGVRAFVSGLAVASARVMIASSLNDHDTSYMAEALECQKPYSGYIHLIAEWRNEITYKDPDTTINVWPIEVPDDAGE 1668
PP WDS+ CM WGVP+LQ E+DP GYL++ GR YHRILDL FR ++ ++ + +T L+++ + ++ L + +I FF+EY W++ +REP++ LRPN FY+G+V L+E Q+ W G F++VQWRTET+TG+L +CY ++ +EE+R +LG QV FNTDL G+TS TY V+ +I DYP A+DN ++ D +DAGV+A VSGL ASA ++ SS N ++ ECQKP+S YI L+ +WR ++ KD + + P+ ++ GE
Sbjct: 76 PPRWDSSTCMESWGVPELQTEVDPGGYLLFSEGR-------------------------------------------------------YHRILDLWAFRALLRDRLLSAEGFLTVLSAEWEQTLLPSLVTAGNITSFFEEYDQ--------WQARAWRREPVDLLRPNPFYLGLVGKLIEAQEGWKDGGFLSVQWRTETSTGNLTECYGVHVRSAVEERRLSLGFSRSQVFFNTDLVGETSTTYNATVVSAYSGVVDAIRGDYPVAMDNTVYDILNDEQDAGVKAIVSGLISASADFLLTSSFNGTGSN------ECQKPHSKYIDLVTDWRLDVVGKDLSSIGQMLPLLSLEEGGE 364
BLAST of mRNA_H-paniculata_contig3008.8164.1 vs. uniprot
Match: D7G2V8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2V8_ECTSI) HSP 1 Score: 56.2 bits (134), Expect = 1.220e-5 Identity = 25/56 (44.64%), Postives = 33/56 (58.93%), Query Frame = 1
Query: 535 EGLDRAEGGAPKDSVITEGTVGTPPVWDSTLCMHHWGVPQLQEEIDPNGYLIYVSG 702
EG+ +AEG + PP WDS+ CM WGVP+LQ E+DP GYL++ G
Sbjct: 78 EGVQQAEG---------RRSTNIPPRWDSSTCMESWGVPELQTEVDPGGYLLFSEG 124 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3008.8164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3008.8164.1 >prot_H-paniculata_contig3008.8164.1 ID=prot_H-paniculata_contig3008.8164.1|Name=mRNA_H-paniculata_contig3008.8164.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=550bp MVVLDLCPITPQNRLADSTQPRKSTSNHIQHHDHALPPKGESRGVISDALback to top mRNA from alignment at H-paniculata_contig3008:2362..18657- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3008.8164.1 ID=mRNA_H-paniculata_contig3008.8164.1|Name=mRNA_H-paniculata_contig3008.8164.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=16296bp|location=Sequence derived from alignment at H-paniculata_contig3008:2362..18657- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3008:2362..18657- >mRNA_H-paniculata_contig3008.8164.1 ID=mRNA_H-paniculata_contig3008.8164.1|Name=mRNA_H-paniculata_contig3008.8164.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3300bp|location=Sequence derived from alignment at H-paniculata_contig3008:2362..18657- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |