mRNA_H-paniculata_contig30068.8162.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig30068.8162.1 vs. uniprot
Match: A0A1J3F7G4_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3F7G4_NOCCA) HSP 1 Score: 130 bits (328), Expect = 7.370e-30 Identity = 81/232 (34.91%), Postives = 119/232 (51.29%), Query Frame = 3
Query: 324 LRKSLYSLKQSGRHWNNARGDFLVGIELDRFTTYACLYFSRDDGGETNNLVAVYVDDLVIAGRR-EKVDEFKHNISQRSGMKDLDSLSRVLGIEVRRDRPNDTITISQGSYIREVLKGYHFDECREVPTPVEGKLKISAPDSVDKPSEPKSLGAVLSDIVAEVQERTKGRSGNSTEYRGMVGSLMYASTGTRPGIAYAVHQAARRMEGPCREDFSTCKFIFRYLSTVPDLGI 1016
L+KSLY LKQS R WN F+ G + R +C+Y + +GG L+ YVDD++IA + ++D K +S MKD+ + SR+LGI+++RDR + +SQ SY+ +V+K ++ E + V TP+ G K+SA V EV E Y VGS+MYA GTRP IAYA+ +R M P + K++ RY+ DL +
Sbjct: 985 LKKSLYGLKQSPRLWNKKFNQFITGEKFIRSHQDSCVYVKKVEGGYVYLLL--YVDDMLIAAKEMAEIDRLKSALSSEFEMKDMGAASRILGIDIKRDRKEGVLYLSQSSYLEKVVKRFNMGEAKSVNTPIGGHFKLSA--------------------VKEVSECIDTE---KYPYSSAVGSVMYAMIGTRPDIAYAIGLISRFMSKPGIMHWEAVKWLLRYIRGTADLNL 1191
BLAST of mRNA_H-paniculata_contig30068.8162.1 vs. uniprot
Match: UPI00142E31C7 (uncharacterized protein LOC103832254 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142E31C7) HSP 1 Score: 124 bits (312), Expect = 9.550e-28 Identity = 78/229 (34.06%), Postives = 117/229 (51.09%), Query Frame = 3
Query: 324 LRKSLYSLKQSGRHWNNARGDFLVGIELDRFTTYACLYFSRDDGGETNNLVAVYVDDLVIAGRREK-VDEFKHNISQRSGMKDLDSLSRVLGIEVRRDRPNDTITISQGSYIREVLKGYHFDECREVPTPVEGKLKISAPDSVDKPSEPKSLGAVLSDIVAEVQERTKGRSGNSTEYRGMVGSLMYASTGTRPGIAYAVHQAARRMEGPCREDFSTCKFIFRYLSTVPD 1007
L KSLY LKQS R WN F+ +R C+Y D L+ +YVDD++IA + K + K ++ + MKDL + SR+LG+++ RDR T+ +SQG Y+++VL+ ++ E + V TP+ + K+ KSL + +E + R N Y VGSLMYA G+RPG+ +AV +R M P R + K++ RYL D
Sbjct: 969 LLKSLYGLKQSPRQWNRRFDSFMKQQGFERSAYDPCVYMKGSDSSHMVYLL-IYVDDMLIASKDSKEIKRIKDSLKREFEMKDLGAASRILGMDIIRDRKKGTLKLSQGKYLQKVLETFNMAESKAVVTPIGPQFKL------------KSL--------TQKEEHEEARFMNVIPYASAVGSLMYAMVGSRPGLCFAVGLISRYMSKPGRIHWEAVKWVMRYLKGALD 1176
BLAST of mRNA_H-paniculata_contig30068.8162.1 vs. uniprot
Match: A0A2K3N065_TRIPR (Copia LTR rider n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3N065_TRIPR) HSP 1 Score: 124 bits (310), Expect = 1.700e-27 Identity = 81/230 (35.22%), Postives = 122/230 (53.04%), Query Frame = 3
Query: 312 FVRRLRKSLYSLKQSGRHWNNARGDFLVGIELDRFTTYACLYFSRDDGGETNNLVAVYVDDLVIAGRR-EKVDEFKHNISQRSGMKDLDSLSRVLGIEVRRDRPNDTITISQGSYIREVLKGYHFDECREVPTPVEGKLKISAPDSVDK-PSEPKSLGAVLSDIVAEVQERTKGRSGNSTEYRGMVGSLMYASTGTRPGIAYAVHQAARRMEGPCREDFSTCKFIFRYLS 995
+V +L++SLY LKQS R WN F+ I R C+YF R G + ++ +YVDD++IA E V K +++ MKDL + SR+LGI++RRDR + +SQ +Y+R++L+ + + V TP + K+S +D+ PS +V+ NS Y +VGSLMYA TRP IAYAV +R M P + + K+I RY++
Sbjct: 936 YVCKLKRSLYGLKQSPRQWNRRFDKFMARISFIRSQFDHCVYF-RFRPGNSFVILLLYVDDILIASNNVEDVTRVKAELNKEFDMKDLGAASRILGIDIRRDRKKSKLCLSQEAYLRKILEKFGMSNSKPVVTPTNPQFKLS----IDQCPS-------------TDVERAYM----NSIPYANIVGSLMYAMVCTRPDIAYAVSLVSRYMANPGKAHWQALKWILRYIN 1143
BLAST of mRNA_H-paniculata_contig30068.8162.1 vs. uniprot
Match: UPI00142E19AD (uncharacterized protein LOC103874474 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142E19AD) HSP 1 Score: 124 bits (310), Expect = 1.710e-27 Identity = 74/232 (31.90%), Postives = 120/232 (51.72%), Query Frame = 3
Query: 324 LRKSLYSLKQSGRHWNNARGDFLVGIELDRFTTYACLYFSRDDGGETNNLVAVYVDDLVIAGRRE-KVDEFKHNISQRSGMKDLDSLSRVLGIEVRRDRPNDTITISQGSYIREVLKGYHFDECREVPTPVEGKLKISAPDSVDKPSEPKSLGAVLSDIVAEVQERTKGRSGNSTEYRGMVGSLMYASTGTRPGIAYAVHQAARRMEGPCREDFSTCKFIFRYLSTVPDLGI 1016
L+KSLY LKQ+ R WN FLV R + C+Y ++ G E + +YVDD+++A +++ ++ + K +S MKD+ SR+LGI+++RDR DT+ + Q YI++VLK + E + V TP+ K+++ + D+ + + + Y VGS+MYA GTRP +AYA+ +R M P + K++ RYL DL +
Sbjct: 982 LKKSLYGLKQAPRQWNKRFNSFLVSQGFIRSDSDLCVYI-KEVGPEDYVYLLLYVDDMLLAAKQKSEIQKLKDVLSSEFEMKDMGPASRILGIDIKRDREQDTLKLCQSGYIQKVLKRFKMSESKAVATPMGSHFKLASVKNADERIDTEKV-----------------------PYLSAVGSVMYAMVGTRPDVAYALGLVSRFMSKPGSIHWEAVKWLLRYLRGSADLNL 1189
BLAST of mRNA_H-paniculata_contig30068.8162.1 vs. uniprot
Match: Q02902_ARATH (Orf 3 (Fragment) n=3 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q02902_ARATH) HSP 1 Score: 121 bits (304), Expect = 2.880e-27 Identity = 74/233 (31.76%), Postives = 120/233 (51.50%), Query Frame = 3
Query: 324 LRKSLYSLKQSGRHWNNARGDFLVGIELDRFTTYACLYFSRDDGGETNNL-VAVYVDDLVIAGR-REKVDEFKHNISQRSGMKDLDSLSRVLGIEVRRDRPNDTITISQGSYIREVLKGYHFDECREVPTPVEGKLKISAPDSVDKPSEPKSLGAVLSDIVAEVQERTKGRSGNSTEYRGMVGSLMYASTGTRPGIAYAVHQAARRMEGPCREDFSTCKFIFRYLSTVPDLGI 1016
L+KSLY LKQS R WN F++ R AC+Y + GE ++L + +YVDD++IAG+ + ++++ K +S MKD+ SR+LGI++ RDR N + +SQ YI V++ ++ E + +P+ K++A V++ + N+ Y VG++MYA GTRP +AYA+ +R M P + K+I RY+ DL +
Sbjct: 217 LKKSLYGLKQSPRQWNKRFSRFMIDQNFIRSEHDACVYVKQ--AGEQDHLYLLLYVDDMLIAGKSKSEINKVKEQLSMEFEMKDMGPASRILGIDIIRDRKNGVLRMSQARYIHNVVQRFNMAEAKVTRSPIGAHFKLAA-----------------------VRDDDECIDNNALPYASAVGNIMYAMIGTRPDLAYAICLVSRYMARPGNIHWEAVKWILRYMRGSQDLNL 424
BLAST of mRNA_H-paniculata_contig30068.8162.1 vs. uniprot
Match: Q9SJT2_ARATH (Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9SJT2_ARATH) HSP 1 Score: 122 bits (306), Expect = 5.700e-27 Identity = 75/224 (33.48%), Postives = 115/224 (51.34%), Query Frame = 3
Query: 324 LRKSLYSLKQSGRHWNNARGDFLVGIELDRFTTYACLYFSRDDGGETNNLVAVYVDDLVIAGR-REKVDEFKHNISQRSGMKDLDSLSRVLGIEVRRDRPNDTITISQGSYIREVLKGYHFDECREVPTPVEGKLKISAPDSVDKPSEPKSLGAVLSDIVAEVQERTKGRSGNSTEYRGMVGSLMYASTGTRPGIAYAVHQAARRMEGPCREDFSTCKFIFRYL 992
L KSLY LKQ+ + WN ++ I R +C Y G L+ +YVDD+++A + +E + + K +SQR MKDL + R+LG+E+ R+R +T+ +SQ Y+ ++L+ Y+ E + V TP+ LK+ A E QE+ + S Y VGS+MYA GTRP +AY V +R M P RE + K++ RY+
Sbjct: 960 LNKSLYGLKQAPKQWNEKFNAYMSEIGFIRSLYDSCAYIKELSDGSRVYLL-LYVDDMLVAAKNKEDISQLKEELSQRFDMKDLGAAKRILGMEIIRNREENTLWLSQNGYLNKILETYNMAESKHVVTPLGAHLKMRA-------------------ATVEKQEQDEDYM-KSIPYSSAVGSIMYAMIGTRPDLAYPVGIISRYMSQPAREHWLGVKWVLRYI 1162
BLAST of mRNA_H-paniculata_contig30068.8162.1 vs. uniprot
Match: A0A6D2KZJ0_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KZJ0_9BRAS) HSP 1 Score: 119 bits (299), Expect = 6.170e-27 Identity = 75/232 (32.33%), Postives = 117/232 (50.43%), Query Frame = 3
Query: 324 LRKSLYSLKQSGRHWNNARGDFLVGIELDRFTTYACLYFSRDDGGETNNLVAVYVDDLVIAGRR-EKVDEFKHNISQRSGMKDLDSLSRVLGIEVRRDRPNDTITISQGSYIREVLKGYHFDECREVPTPVEGKLKISAPDSVDKPSEPKSLGAVLSDIVAEVQERTKGRSGNSTEYRGMVGSLMYASTGTRPGIAYAVHQAARRMEGPCREDFSTCKFIFRYLSTVPDLGI 1016
L+KSLY LKQS R WN F++G + R +C+Y + + G L+ YVDD+++A + ++ + K +S MKD+ SR+LGI++RRDR + +SQ SY+ +V++ + E + V TP+ G K+SA V E ++ Y +VGS+MYA GTRP IAYA+ + M P + K++ RY+ DL +
Sbjct: 49 LKKSLYGLKQSPRLWNKKFNQFIIGEKFVRSHQDSCVYVKKVESGYMYLLL--YVDDILMAAKDIAEIVKLKSALSSEFEMKDMGPASRILGIDIRRDREAGVLYLSQASYLEKVVQKFKMKEAKSVNTPMGGHFKLSA-----------------------VTEDSECIDTEKYPYSSVVGSIMYAMIGTRPDIAYAIGLVSMFMSKPGMMHWEAVKWLLRYIKGSSDLEV 255
BLAST of mRNA_H-paniculata_contig30068.8162.1 vs. uniprot
Match: A0A1J3IYK5_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3IYK5_NOCCA) HSP 1 Score: 119 bits (298), Expect = 7.250e-27 Identity = 76/224 (33.93%), Postives = 112/224 (50.00%), Query Frame = 3
Query: 324 LRKSLYSLKQSGRHWNNARGDFLVGIELDRFTTYACLYFSRDDGGETNNLVAVYVDDLVIA-GRREKVDEFKHNISQRSGMKDLDSLSRVLGIEVRRDRPNDTITISQGSYIREVLKGYHFDECREVPTPVEGKLKISAPDSVDKPSEPKSLGAVLSDIVAEVQERTKGRSGNSTEYRGMVGSLMYASTGTRPGIAYAVHQAARRMEGPCREDFSTCKFIFRYL 992
LRKSLY LKQS R WN F+ R C+Y R+ E + +YVDD++IA G ++ K ++S + MKD+ SR+LG+++ RDR T+ +SQ SYI +VLK + E + TP+ ++ + ++ E + T Y VGSLMYA G+RP IAYAV +R M P R+ ++ K++ RYL
Sbjct: 36 LRKSLYGLKQSPRQWNIKFDSFMKEANFIRSEYDQCVYM-RNIHNEKAVYLLLYVDDILIASGSMSEIRSVKDSLSSKFEMKDMGKASRILGMDIIRDRERGTLQLSQESYIEKVLKTFGMTEAKPTTTPLATHFRLKSLTKDERKEEAVHM--------------------EDTPYASAVGSLMYAMIGSRPDIAYAVGVISRFMSNPGRDHWTAVKWVLRYL 238
BLAST of mRNA_H-paniculata_contig30068.8162.1 vs. uniprot
Match: A0A6D2JMB2_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JMB2_9BRAS) HSP 1 Score: 120 bits (300), Expect = 3.550e-26 Identity = 77/224 (34.38%), Postives = 115/224 (51.34%), Query Frame = 3
Query: 324 LRKSLYSLKQSGRHWNNARGDFLVGIELDRFTTYACLYFSRDDGGETNNLVAVYVDDLVIA-GRREKVDEFKHNISQRSGMKDLDSLSRVLGIEVRRDRPNDTITISQGSYIREVLKGYHFDECREVPTPVEGKLKISAPDSVDKPSEPKSLGAVLSDIVAEVQERTKGRSGNSTEYRGMVGSLMYASTGTRPGIAYAVHQAARRMEGPCREDFSTCKFIFRYL 992
LRKSLY LKQS R WN F+ + R C+Y E L+ +YVDD++IA G ++ K ++S++ MKDL SR+LG+++ RDR T+ +SQ SYI +VLK + + + TP+ K+ + ++ E V ++ + Y VGSLMYA G+RP +AYAV +R M P RE ++ K++ RYL
Sbjct: 1081 LRKSLYGLKQSPRQWNLKFDSFMKEEKFIRSNGDPCVYMKNVKTKEAVYLL-LYVDDILIASGSMAEIRLIKESLSRKFEMKDLGKASRILGMDIIRDREKGTLKLSQESYIEKVLKAFDMADAKSTTTPLATHFKLKSLTKAERKEE-----------VVHMENKP---------YASAVGSLMYAMIGSRPDLAYAVGVISRFMSNPGREHWTAVKWVLRYL 1283
BLAST of mRNA_H-paniculata_contig30068.8162.1 vs. uniprot
Match: A0A6D2K0I3_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2K0I3_9BRAS) HSP 1 Score: 119 bits (298), Expect = 6.370e-26 Identity = 72/232 (31.03%), Postives = 118/232 (50.86%), Query Frame = 3
Query: 324 LRKSLYSLKQSGRHWNNARGDFLVGIELDRFTTYACLYFSRDDGGETNNLVAVYVDDLVIAGRR-EKVDEFKHNISQRSGMKDLDSLSRVLGIEVRRDRPNDTITISQGSYIREVLKGYHFDECREVPTPVEGKLKISAPDSVDKPSEPKSLGAVLSDIVAEVQERTKGRSGNSTEYRGMVGSLMYASTGTRPGIAYAVHQAARRMEGPCREDFSTCKFIFRYLSTVPDLGI 1016
L+KSLY LKQ+ R WN F+ + R +C+Y ++ G E + +YVDD+ +A R ++ + K+ +SQ MKD+ + SR+LGI+++RDR T+ +SQ YI +V++ ++ + V TP+ ++S+ +E +G Y VGS+MYA GTRP +AYA+ +R M P + K++ RYL + DL +
Sbjct: 962 LKKSLYGLKQAPRQWNMKFDTFMKNQKFTRSIHDSCVYV-KEVGHEDYIYLLLYVDDMFLAARSMTEIRKLKNVLSQEFEMKDMGAASRILGIDIKRDREKGTLCLSQSRYIEKVIQRFNMSGAKIVTTPIGAHFRLSS-----------------------TKEDEEGVDIEIVPYSSAVGSIMYAMVGTRPDVAYAIGLVSRFMSKPGAVHWEAVKWLLRYLRSSTDLNL 1169 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30068.8162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig30068.8162.1 >prot_H-paniculata_contig30068.8162.1 ID=prot_H-paniculata_contig30068.8162.1|Name=mRNA_H-paniculata_contig30068.8162.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=152bp MKDLDSLSRVLGIEVRRDRPNDTITISQGSYIREVLKGYHFDECREVPTPback to top mRNA from alignment at H-paniculata_contig30068:3..1018- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig30068.8162.1 ID=mRNA_H-paniculata_contig30068.8162.1|Name=mRNA_H-paniculata_contig30068.8162.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1016bp|location=Sequence derived from alignment at H-paniculata_contig30068:3..1018- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig30068:3..1018- >mRNA_H-paniculata_contig30068.8162.1 ID=mRNA_H-paniculata_contig30068.8162.1|Name=mRNA_H-paniculata_contig30068.8162.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at H-paniculata_contig30068:3..1018- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |