mRNA_H-paniculata_contig300.8149.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig300.8149.1 vs. uniprot
Match: A0A6H5L3A9_9PHAE (Rab3 GTPase-activating protein catalytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3A9_9PHAE) HSP 1 Score: 335 bits (859), Expect = 6.410e-93 Identity = 248/527 (47.06%), Postives = 281/527 (53.32%), Query Frame = 1
Query: 1 GRGGCLLASARYSWERRLYDGRMFGG-DGDV---QTEWRNRVWRERSHQRRGSRDRALRALLAEAQGEGECPVWGPKEDPLDAIRLTATWHGLGGTCPLPHAPLELLGDSAE----GDNNFDWSAAVSWEQRRTRGVGSDGRGGSLGFKLRLLLAAYVHCLALGGDLLMADICSAGPEVGESS-RERARHIGAVLGPDTRQLVAIMRTLPT-STGADRGSALGHHAAD--DAVGTARYLLTPRRL-----PLKYDGGGGAGGPWNSTVGHSNSRQKSGASGPGDNDDAHDEGNRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVPPSLASLPPLSVLPLSSSSPSPSSLASPAVTSAFPTVAGQMKGKQNNDKSARGLRRQTQENIEAPLDPGANPAHDDSRPPASVPHGTVPWLWVPRGGAPACRLVSQVAMEAARLGAYGVCLGDLADFWKAFVQEVRFLWEEGSSIPRMDPEPPVDGYSMYDPRCTGQDAALTAMFRRYIT-TPPQPPS 1527
G GG L ASARY+WERRLYDGR+ GG DG+ Q EWR RERSH RG+R+ A+RALLA A+GE P WGP+ DPLD +RL+A W GLGG PLPH PLELL D+ G + W A+VSWE T + + GSLG KLRLLLA YVHCLALGGDLLMADICSA E SS RERARHIGAVLGP TR+L+A M T P G G G AD D V +ARYLLTPRR K+ GGGG+ A PG D +GN +XXXXXXXXXXXXXXXXX RG PWLWVPRGGAPACRLVSQ+A+EAAR GA GVCLGD+A FWK+FVQE+RFLWEE +S+P+MDPEPPVDG SMYD R TGQ A L+ RR I +PP P+
Sbjct: 296 GYGGLLEASARYTWERRLYDGRVLGGEDGEDDLRQNEWRAGFLRERSHLCRGTRECAVRALLASARGEHGIPAWGPEGDPLDGVRLSAVWRGLGGDRPLPHTPLELLRDNLSPPGGGSSLSQWEASVSWE---TASLSA----GSLGLKLRLLLAVYVHCLALGGDLLMADICSADAEAELSSARERARHIGAVLGPSTRELIARMTTAPPRGDGESGGGTHGDDRADPADIVHSARYLLTPRRSRPSRSAQKHGGGGGS------------------AMAPGGGDVG--DGNGAXXXXXXXXXXXXXXXXXE-----------------------------------------------------------------------------RGS----------------------------------PWLWVPRGGAPACRLVSQLALEAARFGAEGVCLGDVAAFWKSFVQELRFLWEESASVPQMDPEPPVDGLSMYDLRITGQRAGLSERLRRNILRSPPATPA 684
BLAST of mRNA_H-paniculata_contig300.8149.1 vs. uniprot
Match: D7FXM6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXM6_ECTSI) HSP 1 Score: 327 bits (838), Expect = 3.990e-92 Identity = 228/527 (43.26%), Postives = 262/527 (49.72%), Query Frame = 1
Query: 1 GRGGCLLASARYSWERRLYDGRMFGG-DGDV---QTEWRNRVWRERSHQRRGSRDRALRALLAEAQGEGECPVWGPKEDPLDAIRLTATWHGLGGTCPLPHAPLELLGD--SAEGDNNF--DWSAAVSWEQRRTRGVGSDGRGGSLGFKLRLLLAAYVHCLALGGDLLMADICSAGPEVGESS-RERARHIGAVLGPDTRQLVAIMRTLPTSTGADRGSAL-GHHAAD--DAVGTARYLLTPRRL-----PLKYDGGGGAGGPWNSTVGHSNSRQKSGASGPGDNDDAHDEGNRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVPPSLASLPPLSVLPLSSSSPSPSSLASPAVTSAFPTVAGQMKGKQNNDKSARGLRRQTQENIEAPLDPGANPAHDDSRPPASVPHGTVPWLWVPRGGAPACRLVSQVAMEAARLGAYGVCLGDLADFWKAFVQEVRFLWEEGSSIPRMDPEPPVDGYSMYDPRCTGQDAALTAMFRRYITT-PPQPPS 1527
G GG L ASARY+WERRL+DGR+ GG DG+ QTEWR RERSH RG+R+ A+R LLA A+GE P WGP+ DPLD +RL+A W GLGG PLPHAPLELL D S G ++ W A+VSWE T + + GSLG KLRLLLA YVHCLALGGDLLMADICSA E SS RERARHIGAVLGP TR+L+A M T P + G G AD D V +ARYLLTPRR K+ GGGG+ V +A G G + A PWLWVPRGGAPACRLVSQ+A+EAAR GA GVCLGD+A FWK+FVQE+RFLWEE +S+P+MDPEPPVDG SMYD R TGQ A L+ RR I PP P+
Sbjct: 297 GYGGRLEASARYTWERRLFDGRVLGGEDGEDDLRQTEWRAGFLRERSHLCRGTRECAVRTLLASARGEHGIPAWGPEGDPLDGVRLSAVWRGLGGDRPLPHAPLELLCDYLSPPGGSSSLSQWEASVSWE---TTSLSA----GSLGLKLRLLLAVYVHCLALGGDLLMADICSADAEAELSSARERARHIGAVLGPSTRELIARMTTAPRRGDGESGDGTDGDDRADPADIVHSARYLLTPRRSRPSRSAEKHGGGGGS------------------------------------------------------------------------------------------------------------VVAAEGGEVGDGSGAEK-----------------------AXXXXXXXXXXXXXXXXXSPWLWVPRGGAPACRLVSQLALEAARFGAEGVCLGDVAAFWKSFVQELRFLWEESASVPQMDPEPPVDGLSMYDLRITGQRAGLSERLRRNILQRPPATPA 685 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig300.8149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig300.8149.1 >prot_H-paniculata_contig300.8149.1 ID=prot_H-paniculata_contig300.8149.1|Name=mRNA_H-paniculata_contig300.8149.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=993bp GRGGCLLASARYSWERRLYDGRMFGGDGDVQTEWRNRVWRERSHQRRGSRback to top mRNA from alignment at H-paniculata_contig300:16465..30036+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig300.8149.1 ID=mRNA_H-paniculata_contig300.8149.1|Name=mRNA_H-paniculata_contig300.8149.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=13572bp|location=Sequence derived from alignment at H-paniculata_contig300:16465..30036+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig300:16465..30036+ >mRNA_H-paniculata_contig300.8149.1 ID=mRNA_H-paniculata_contig300.8149.1|Name=mRNA_H-paniculata_contig300.8149.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5958bp|location=Sequence derived from alignment at H-paniculata_contig300:16465..30036+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |