mRNA_H-paniculata_contig300.8147.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig300.8147.1
Unique NamemRNA_H-paniculata_contig300.8147.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig300.8147.1 vs. uniprot
Match: D8LGV7_ECTSI (Histone deacetylase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGV7_ECTSI)

HSP 1 Score: 212 bits (540), Expect = 1.020e-65
Identity = 99/104 (95.19%), Postives = 103/104 (99.04%), Query Frame = 1 
Query:    1 AEASGFCYVNDIVLAILELLKYHPRVLYIDIDIHHGDGVEEAFYTTDRVMTLSFHKYGDFFPGTGDIEDVGSKTGKYYSVNFPLQEGIDDNSFESIFKPVVDKV 312
            AEASGFCYVNDIVLAILELLKYH RVLYIDIDIHHGDGVEEAFYTTDRVMTLSFHKYGDFFPGTGDI+DVG+K+GKYYSVNFPLQEGIDDNSFESIFKPVV+KV
Sbjct:  146 AEASGFCYVNDIVLAILELLKYHSRVLYIDIDIHHGDGVEEAFYTTDRVMTLSFHKYGDFFPGTGDIKDVGAKSGKYYSVNFPLQEGIDDNSFESIFKPVVNKV 249
[Close]
BLAST of mRNA_H-paniculata_contig300.8147.1 vs. uniprot
Match: A0A2L0V6F2_ORNMO (Histone deacetylase (Fragment) n=1 Tax=Ornithodoros moubata TaxID=6938 RepID=A0A2L0V6F2_ORNMO)

HSP 1 Score: 191 bits (484), Expect = 2.360e-60
Identity = 83/104 (79.81%), Postives = 98/104 (94.23%), Query Frame = 1 
Query:    1 AEASGFCYVNDIVLAILELLKYHPRVLYIDIDIHHGDGVEEAFYTTDRVMTLSFHKYGDFFPGTGDIEDVGSKTGKYYSVNFPLQEGIDDNSFESIFKPVVDKV 312
            +EASGFCYVNDIVLAILELLKYH RVLYID+DIHHGDGVEEAFYTTDRVMT SFHKYG++FPGTGD+ D+G+  GKYY+VNFPL++GIDD+S+ESIF+P++ KV
Sbjct:   58 SEASGFCYVNDIVLAILELLKYHQRVLYIDVDIHHGDGVEEAFYTTDRVMTCSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPLRDGIDDDSYESIFQPLISKV 161
[Close]
BLAST of mRNA_H-paniculata_contig300.8147.1 vs. uniprot
Match: UPI000FFD8CC2 (histone deacetylase 1 n=1 Tax=Empidonax traillii TaxID=164674 RepID=UPI000FFD8CC2)

HSP 1 Score: 192 bits (487), Expect = 4.150e-60
Identity = 84/104 (80.77%), Postives = 98/104 (94.23%), Query Frame = 1 
Query:    1 AEASGFCYVNDIVLAILELLKYHPRVLYIDIDIHHGDGVEEAFYTTDRVMTLSFHKYGDFFPGTGDIEDVGSKTGKYYSVNFPLQEGIDDNSFESIFKPVVDKV 312
            +EASGFCYVNDIVLAILELLKYH RVLYIDIDIHHGDGVEEAFYTTDRVMT+SFHKYG++FPGTGD+ D+G+  GKYY+VN+PL++GIDD S+E+IFKPV+ KV
Sbjct:   66 SEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVISKV 169
[Close]
BLAST of mRNA_H-paniculata_contig300.8147.1 vs. uniprot
Match: L8HK34_ACACA (Histone deacetylase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HK34_ACACA)

HSP 1 Score: 195 bits (496), Expect = 4.310e-60
Identity = 85/104 (81.73%), Postives = 99/104 (95.19%), Query Frame = 1 
Query:    1 AEASGFCYVNDIVLAILELLKYHPRVLYIDIDIHHGDGVEEAFYTTDRVMTLSFHKYGDFFPGTGDIEDVGSKTGKYYSVNFPLQEGIDDNSFESIFKPVVDKV 312
            +EASGFCY+NDIVLAILELLKYH RVLYIDIDIHHGDGVEEAFYTTDRVMT+SFHKYG++FPGTGDI D+G++ GKYYSVNFPL++GIDD S+E+IFKP++ KV
Sbjct:  140 SEASGFCYINDIVLAILELLKYHARVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDIRDIGAQKGKYYSVNFPLRDGIDDESYENIFKPIIQKV 243
[Close]
BLAST of mRNA_H-paniculata_contig300.8147.1 vs. uniprot
Match: A0A833WWS1_PHYIN (Histone deacetylase n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WWS1_PHYIN)

HSP 1 Score: 197 bits (500), Expect = 6.470e-60
Identity = 86/104 (82.69%), Postives = 97/104 (93.27%), Query Frame = 1 
Query:    1 AEASGFCYVNDIVLAILELLKYHPRVLYIDIDIHHGDGVEEAFYTTDRVMTLSFHKYGDFFPGTGDIEDVGSKTGKYYSVNFPLQEGIDDNSFESIFKPVVDKV 312
            A  SGFCYVNDIVL ILELLKYHPRVLYIDID HHGDGVEEAFY TDRVMT+SFHKYGDFFPGTGD++D+G+K+GKYY+VNFPL  G+DD+S+ESIFKPV+DKV
Sbjct:   86 ASGSGFCYVNDIVLGILELLKYHPRVLYIDIDAHHGDGVEEAFYVTDRVMTVSFHKYGDFFPGTGDVKDIGAKSGKYYAVNFPLHSGMDDDSYESIFKPVIDKV 189
[Close]
BLAST of mRNA_H-paniculata_contig300.8147.1 vs. uniprot
Match: B6RB85_HALDI (Histone deacetylase (Fragment) n=3 Tax=Haliotis TaxID=6452 RepID=B6RB85_HALDI)

HSP 1 Score: 192 bits (489), Expect = 6.580e-60
Identity = 85/104 (81.73%), Postives = 98/104 (94.23%), Query Frame = 1 
Query:    1 AEASGFCYVNDIVLAILELLKYHPRVLYIDIDIHHGDGVEEAFYTTDRVMTLSFHKYGDFFPGTGDIEDVGSKTGKYYSVNFPLQEGIDDNSFESIFKPVVDKV 312
            +EASGFCYVNDIVLAILELLKYH RVLY+DIDIHHGDGVEEAFYTTDRVMT+SFHKYG++FPGTGD+ D+G+  GKYY+VNFPL++GIDD S+ESIFKPV+ KV
Sbjct:  144 SEASGFCYVNDIVLAILELLKYHQRVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPLRDGIDDESYESIFKPVIMKV 247
[Close]
BLAST of mRNA_H-paniculata_contig300.8147.1 vs. uniprot
Match: A0A7S3M7B8_9STRA (Histone deacetylase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M7B8_9STRA)

HSP 1 Score: 197 bits (501), Expect = 9.330e-60
Identity = 87/103 (84.47%), Postives = 99/103 (96.12%), Query Frame = 1 
Query:    4 EASGFCYVNDIVLAILELLKYHPRVLYIDIDIHHGDGVEEAFYTTDRVMTLSFHKYGDFFPGTGDIEDVGSKTGKYYSVNFPLQEGIDDNSFESIFKPVVDKV 312
            EASGFCY+NDIVLAILELLK++PRVLYIDID+HHGDGVEEAFYTTDRVMTLSFHKYGDFFPGTGDI+D+G K GKYYSVN PLQ+GIDD S+E++FKPV+DK+
Sbjct:   98 EASGFCYINDIVLAILELLKHNPRVLYIDIDVHHGDGVEEAFYTTDRVMTLSFHKYGDFFPGTGDIKDIGVKAGKYYSVNVPLQDGIDDASYETVFKPVLDKI 200
[Close]
BLAST of mRNA_H-paniculata_contig300.8147.1 vs. uniprot
Match: A0A7K6DHL0_9PASS (Histone deacetylase (Fragment) n=2 Tax=Euteleostomi TaxID=117571 RepID=A0A7K6DHL0_9PASS)

HSP 1 Score: 192 bits (487), Expect = 9.490e-60
Identity = 84/104 (80.77%), Postives = 98/104 (94.23%), Query Frame = 1 
Query:    1 AEASGFCYVNDIVLAILELLKYHPRVLYIDIDIHHGDGVEEAFYTTDRVMTLSFHKYGDFFPGTGDIEDVGSKTGKYYSVNFPLQEGIDDNSFESIFKPVVDKV 312
            +EASGFCYVNDIVLAILELLKYH RVLYIDIDIHHGDGVEEAFYTTDRVMT+SFHKYG++FPGTGD+ D+G+  GKYY+VN+PL++GIDD S+E+IFKPV+ KV
Sbjct:   29 SEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVISKV 132
[Close]
BLAST of mRNA_H-paniculata_contig300.8147.1 vs. uniprot
Match: A0A2D4BF91_PYTIN (Histone deacetylase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BF91_PYTIN)

HSP 1 Score: 197 bits (502), Expect = 1.240e-59
Identity = 87/104 (83.65%), Postives = 96/104 (92.31%), Query Frame = 1 
Query:    1 AEASGFCYVNDIVLAILELLKYHPRVLYIDIDIHHGDGVEEAFYTTDRVMTLSFHKYGDFFPGTGDIEDVGSKTGKYYSVNFPLQEGIDDNSFESIFKPVVDKV 312
            AE SGFCYVNDIVL ILELLKYHPRVLYIDID+HHGDGVEEAFY TDRVMT+SFHKYGDFFPGTGDI+D+G+K GKYYSVNFPL  G+DD S+ES+FKPV+ KV
Sbjct:  143 AEGSGFCYVNDIVLGILELLKYHPRVLYIDIDVHHGDGVEEAFYVTDRVMTVSFHKYGDFFPGTGDIKDIGAKNGKYYSVNFPLLSGMDDESYESVFKPVIQKV 246
[Close]
BLAST of mRNA_H-paniculata_contig300.8147.1 vs. uniprot
Match: A0A418ATE2_9STRA (Histone deacetylase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418ATE2_9STRA)

HSP 1 Score: 193 bits (490), Expect = 1.880e-59
Identity = 84/104 (80.77%), Postives = 98/104 (94.23%), Query Frame = 1 
Query:    1 AEASGFCYVNDIVLAILELLKYHPRVLYIDIDIHHGDGVEEAFYTTDRVMTLSFHKYGDFFPGTGDIEDVGSKTGKYYSVNFPLQEGIDDNSFESIFKPVVDKV 312
            +EASGFCY+NDIVL ILELLKYHPRVLYIDID+HHGDGVEEAFY TDRVMT+SFHKYGDFFPGTGDI+D+G+K GKYYSVN PL+ GIDD+++ +IFKPV++KV
Sbjct:   71 SEASGFCYINDIVLGILELLKYHPRVLYIDIDVHHGDGVEEAFYVTDRVMTVSFHKYGDFFPGTGDIKDIGAKAGKYYSVNCPLKSGIDDDNYLTIFKPVIEKV 174
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig300.8147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGV7_ECTSI1.020e-6595.19Histone deacetylase n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A2L0V6F2_ORNMO2.360e-6079.81Histone deacetylase (Fragment) n=1 Tax=Ornithodoro... [more]
UPI000FFD8CC24.150e-6080.77histone deacetylase 1 n=1 Tax=Empidonax traillii T... [more]
L8HK34_ACACA4.310e-6081.73Histone deacetylase n=1 Tax=Acanthamoeba castellan... [more]
A0A833WWS1_PHYIN6.470e-6082.69Histone deacetylase n=1 Tax=Phytophthora infestans... [more]
B6RB85_HALDI6.580e-6081.73Histone deacetylase (Fragment) n=3 Tax=Haliotis Ta... [more]
A0A7S3M7B8_9STRA9.330e-6084.47Histone deacetylase n=1 Tax=Spumella elongata TaxI... [more]
A0A7K6DHL0_9PASS9.490e-6080.77Histone deacetylase (Fragment) n=2 Tax=Euteleostom... [more]
A0A2D4BF91_PYTIN1.240e-5983.65Histone deacetylase n=1 Tax=Pythium insidiosum Tax... [more]
A0A418ATE2_9STRA1.880e-5980.77Histone deacetylase n=1 Tax=Aphanomyces invadans T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig300contigH-paniculata_contig300:497..1582 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score211.1
Seed ortholog evalue2.5e-52
Seed eggNOG ortholog2880.D8LGV7
Preferred nameHDAC3
KEGG koko:K06067,ko:K11404,ko:K11483
KEGG Pathwayko04110,ko04213,ko04330,ko04919,ko05016,ko05034,ko05165,ko05169,ko05200,ko05202,ko05203,ko05220,map04110,map04213,map04330,map04919,map05016,map05034,map05165,map05169,map05200,map05202,map05203,map05220
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000118,GO:0000122,GO:0000226,GO:0000228,GO:0000785,GO:0000790,GO:0000819,GO:0001525,GO:0001558,GO:0001568,GO:0001817,GO:0001818,GO:0001889,GO:0001932,GO:0001933,GO:0001934,GO:0001944,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003712,GO:0003714,GO:0003824,GO:0004407,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005794,GO:0005819,GO:0005829,GO:0005856,GO:0005874,GO:0005876,GO:0005886,GO:0006139,GO:0006259,GO:0006323,GO:0006325,GO:0006333,GO:0006338,GO:0006342,GO:0006355,GO:0006357,GO:0006464,GO:0006476,GO:0006725,GO:0006807,GO:0006950,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007059,GO:0007062,GO:0007063,GO:0007154,GO:0007275,GO:0007346,GO:0007389,GO:0007399,GO:0007406,GO:0007548,GO:0007623,GO:0008104,GO:0008134,GO:0008150,GO:0008152,GO:0008285,GO:0009410,GO:0009605,GO:0009612,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009953,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0009991,GO:0010033,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010563,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010639,GO:0010646,GO:0010647,GO:0010648,GO:0010721,GO:0010941,GO:0010942,GO:0010948,GO:0012505,GO:0014070,GO:0015630,GO:0016020,GO:0016043,GO:0016202,GO:0016458,GO:0016569,GO:0016570,GO:0016575,GO:0016787,GO:0016810,GO:0016811,GO:0017053,GO:0017136,GO:0019213,GO:0019216,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019899,GO:0019904,GO:0022008,GO:0022402,GO:0022414,GO:0022607,GO:0023051,GO:0023056,GO:0023057,GO:0030154,GO:0030307,GO:0030332,GO:0030544,GO:0031072,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031401,GO:0031490,GO:0031497,GO:0031507,GO:0031647,GO:0031667,GO:0031668,GO:0031960,GO:0031974,GO:0031981,GO:0032006,GO:0032008,GO:0032204,GO:0032268,GO:0032269,GO:0032270,GO:0032386,GO:0032387,GO:0032388,GO:0032501,GO:0032502,GO:0032507,GO:0032652,GO:0032680,GO:0032692,GO:0032720,GO:0032870,GO:0032872,GO:0032873,GO:0032874,GO:0032879,GO:0032880,GO:0032922,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033157,GO:0033365,GO:0033554,GO:0033558,GO:0033993,GO:0034399,GO:0034401,GO:0034405,GO:0034504,GO:0034613,GO:0034641,GO:0034728,GO:0034739,GO:0034967,GO:0034979,GO:0035239,GO:0035295,GO:0035601,GO:0036211,GO:0040008,GO:0040014,GO:0040020,GO:0040029,GO:0042127,GO:0042221,GO:0042262,GO:0042306,GO:0042307,GO:0042325,GO:0042326,GO:0042327,GO:0042493,GO:0042826,GO:0042981,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043408,GO:0043409,GO:0043410,GO:0043412,GO:0043433,GO:0043523,GO:0043525,GO:0043696,GO:0043697,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045129,GO:0045138,GO:0045185,GO:0045595,GO:0045596,GO:0045786,GO:0045814,GO:0045835,GO:0045843,GO:0045892,GO:0045893,GO:0045927,GO:0045934,GO:0045935,GO:0045936,GO:0045937,GO:0045944,GO:0046328,GO:0046329,GO:0046483,GO:0046661,GO:0046822,GO:0046823,GO:0046824,GO:0046825,GO:0046826,GO:0048511,GO:0048513,GO:0048514,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048583,GO:0048584,GO:0048585,GO:0048634,GO:0048635,GO:0048638,GO:0048646,GO:0048699,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0048880,GO:0048881,GO:0048882,GO:0048915,GO:0048916,GO:0048925,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051020,GO:0051049,GO:0051050,GO:0051051,GO:0051052,GO:0051059,GO:0051090,GO:0051093,GO:0051098,GO:0051101,GO:0051128,GO:0051129,GO:0051147,GO:0051148,GO:0051153,GO:0051154,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051222,GO:0051223,GO:0051224,GO:0051225,GO:0051235,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051384,GO:0051445,GO:0051447,GO:0051457,GO:0051641,GO:0051651,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0051879,GO:0051960,GO:0051961,GO:0051983,GO:0055024,GO:0055026,GO:0060255,GO:0060284,GO:0060303,GO:0060341,GO:0060548,GO:0061008,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070201,GO:0070210,GO:0070302,GO:0070303,GO:0070304,GO:0070491,GO:0070727,GO:0070828,GO:0070868,GO:0070869,GO:0070887,GO:0070925,GO:0070932,GO:0070933,GO:0071103,GO:0071107,GO:0071214,GO:0071260,GO:0071310,GO:0071374,GO:0071495,GO:0071496,GO:0071498,GO:0071548,GO:0071704,GO:0071824,GO:0071840,GO:0071922,GO:0071944,GO:0072091,GO:0072358,GO:0072359,GO:0072595,GO:0080090,GO:0080134,GO:0080135,GO:0090087,GO:0090304,GO:0090316,GO:0090317,GO:0090598,GO:0097159,GO:0097327,GO:0097549,GO:0098732,GO:0098813,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0104004,GO:0140096,GO:0140110,GO:1900180,GO:1900182,GO:1901214,GO:1901216,GO:1901360,GO:1901363,GO:1901564,GO:1901654,GO:1901700,GO:1901861,GO:1901862,GO:1902494,GO:1902531,GO:1902532,GO:1902533,GO:1902679,GO:1902680,GO:1902692,GO:1903320,GO:1903321,GO:1903506,GO:1903507,GO:1903508,GO:1903555,GO:1903556,GO:1903827,GO:1903828,GO:1903829,GO:1904035,GO:1904037,GO:1904589,GO:1904591,GO:1904950,GO:1904951,GO:1905207,GO:1905208,GO:1905634,GO:1990679,GO:2000026,GO:2000112,GO:2000113,GO:2000177,GO:2000178,GO:2000241,GO:2000242,GO:2000647,GO:2000674,GO:2000676,GO:2000725,GO:2000726,GO:2001141
EggNOG free text desc.NAD-dependent histone deacetylase activity (H3-K14 specific)
EggNOG OGsCOG0123@1,KOG1342@2759
Ec32 ortholog descriptionHistone deacetylase
Ec32 orthologEc-28_001400.1
EC3.5.1.98
COG Functional cat.BQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Exons2
Model size312
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929921.8355248-CDS-H-paniculata_contig300:496..5891622929921.8355248-CDS-H-paniculata_contig300:496..589Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig300 497..589 -
1691481070.8203976-CDS-H-paniculata_contig300:496..5891691481070.8203976-CDS-H-paniculata_contig300:496..589Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig300 497..589 -
1622929921.8548288-CDS-H-paniculata_contig300:1363..15821622929921.8548288-CDS-H-paniculata_contig300:1363..1582Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig300 1364..1582 -
1691481070.8372405-CDS-H-paniculata_contig300:1363..15821691481070.8372405-CDS-H-paniculata_contig300:1363..1582Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig300 1364..1582 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig300.8147.1prot_H-paniculata_contig300.8147.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig300 497..1582 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig300.8147.1

>prot_H-paniculata_contig300.8147.1 ID=prot_H-paniculata_contig300.8147.1|Name=mRNA_H-paniculata_contig300.8147.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
AEASGFCYVNDIVLAILELLKYHPRVLYIDIDIHHGDGVEEAFYTTDRVM
TLSFHKYGDFFPGTGDIEDVGSKTGKYYSVNFPLQEGIDDNSFESIFKPV
VDKV
back to top

mRNA from alignment at H-paniculata_contig300:497..1582-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig300.8147.1 ID=mRNA_H-paniculata_contig300.8147.1|Name=mRNA_H-paniculata_contig300.8147.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1086bp|location=Sequence derived from alignment at H-paniculata_contig300:497..1582- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGAGGCGTCTGGGTTCTGCTACGTGAACGACATCGTTCTGGCCATCCT
GGAGCTTCTCAAGTACCATCCGCGCGTACTGTATATCGACATTGACATTC
ACCACGGCGACGGGGTGGAGGAGGCGTTCTACACGACGGACCGGGTTATG
ACTCTGTCGTTCCATAAGTACGGGGACTTTTTTCCCGGGACGGGGGACAT
CGAAGACGTCGGTTCTAAGGTGAAGATTACACACGTCAAACAGATCAAAC
TCTGTAATTGATATGTTTTCGGCGTTTTGCACATGTCGTGAGAAACAGCC
CCTCATCGCTGTAGAACTCGGTTCCGAACACGGTAGAACGTTGTCCCTGG
CAGATGAAACAGAGCAGCTAGAAAGTTTCCCCGTGCCGAGTAAATCGATG
TAAACACCGTGGACTGTTGTAGAATGTGTTGTAGAACGGCACAGGAACGC
TGGTATGTGTGGTGACCCTGTTTTGTTGTGTCGGATATGTGGAAGATATA
GTGTGCGGTGAAACCCAACGGAGGTATAGTACTGTCGGAGTGGTTGCTAA
CGTTTTTTAAACGCGATTTGACCATCTCGAGAACAGAGGCATCACGCGGT
TGAATTTTTTGTTCGAATCGAAAGATGGGGAACGGTAGGTGCGGCTGGCT
TCACTTCCGCCCTCCGTTGATTGAATATTTGCTGATAAGTGCATATAACA
CAGATTGTAGTCAGGTGCATAACTTCAACAGGGGTACAACATGAATTATC
ATGTGAAGTTTAGAGGTATAGTATAACTAACTATCGAAATATTCATGTTT
TACCTCAAGTATACGTGTAAGCGATACAGTGACATTCCTTCGGGAAGGTC
GCCGTAGTCCATGCCGTGCGTGGTCGAAAAGGTCCGAGAAGCCATATCTG
ACCCCCCAAACCCTACAGCCTAACCCCCCTTTATTCCGTATATCCATCTC
TCCTTGTTACTGCGTTTTTTATCTTGTTTTATTTTGTGTGCAGACGGGCA
AGTACTACTCCGTGAACTTTCCTCTCCAAGAGGGCATCGATGACAACTCG
TTCGAGAGTATTTTCAAGCCCGTTGTCGACAAGGTG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig300:497..1582-

>mRNA_H-paniculata_contig300.8147.1 ID=mRNA_H-paniculata_contig300.8147.1|Name=mRNA_H-paniculata_contig300.8147.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig300:497..1582- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGAGGCGTCTGGGTTCTGCTACGTGAACGACATCGTTCTGGCCATCCT
GGAGCTTCTCAAGTACCATCCGCGCGTACTGTATATCGACATTGACATTC
ACCACGGCGACGGGGTGGAGGAGGCGTTCTACACGACGGACCGGGTTATG
ACTCTGTCGTTCCATAAGTACGGGGACTTTTTTCCCGGGACGGGGGACAT
CGAAGACGTCGGTTCTAAGGCCGAGGCGTCTGGGTTCTGCTACGTGAACG
ACATCGTTCTGGCCATCCTGGAGCTTCTCAAGTACCATCCGCGCGTACTG
TATATCGACATTGACATTCACCACGGCGACGGGGTGGAGGAGGCGTTCTA
CACGACGGACCGGGTTATGACTCTGTCGTTCCATAAGTACGGGGACTTTT
TTCCCGGGACGGGGGACATCGAAGACGTCGGTTCTAAGACGGGCAAGTAC
TACTCCGTGAACTTTCCTCTCCAAGAGGGCATCGATGACAACTCGTTCGA
GAGTATTTTCAAGCCCGTTGTCGACAAGGTGACGGGCAAGTACTACTCCG
TGAACTTTCCTCTCCAAGAGGGCATCGATGACAACTCGTTCGAGAGTATT
TTCAAGCCCGTTGTCGACAAGGTG
back to top