mRNA_H-paniculata_contig2976.8084.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2976.8084.1
Unique NamemRNA_H-paniculata_contig2976.8084.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2976.8084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2976contigH-paniculata_contig2976:10834..11574 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size269
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929907.720084-CDS-H-paniculata_contig2976:10833..110431622929907.720084-CDS-H-paniculata_contig2976:10833..11043Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2976 10834..11043 +
1691481064.543046-CDS-H-paniculata_contig2976:10833..110431691481064.543046-CDS-H-paniculata_contig2976:10833..11043Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2976 10834..11043 +
1622929907.733593-CDS-H-paniculata_contig2976:11517..115741622929907.733593-CDS-H-paniculata_contig2976:11517..11574Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2976 11518..11574 +
1691481064.5595691-CDS-H-paniculata_contig2976:11517..115741691481064.5595691-CDS-H-paniculata_contig2976:11517..11574Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2976 11518..11574 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2976.8084.1prot_H-paniculata_contig2976.8084.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2976 10834..11574 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2976.8084.1

>prot_H-paniculata_contig2976.8084.1 ID=prot_H-paniculata_contig2976.8084.1|Name=mRNA_H-paniculata_contig2976.8084.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=89bp
KADNSSTASKVGSSLRASSSKGIARVISGRADARNGKEYNVNGKEEASGM
EHDDEWTKSASHTDYSGKGKAPVDERAYASETPNALSPE
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mRNA from alignment at H-paniculata_contig2976:10834..11574+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2976.8084.1 ID=mRNA_H-paniculata_contig2976.8084.1|Name=mRNA_H-paniculata_contig2976.8084.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=741bp|location=Sequence derived from alignment at H-paniculata_contig2976:10834..11574+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGCTGACAACAGTAGTACTGCTAGTAAGGTTGGCAGCAGTTTGAGAGC
CAGTTCGAGTAAGGGTATCGCTCGTGTTATCAGTGGCCGGGCGGATGCTA
GGAATGGGAAGGAGTACAATGTGAACGGCAAGGAGGAGGCTAGTGGTATG
GAGCATGACGACGAGTGGACCAAGTCAGCGTCGCATACAGATTATTCGGG
GAAGGGCAAGGTGGGTGTCCTGGATGGTTGGGATATTCATGTTTGTGGAG
CGGCCCTTTAGAAACGGGAAATATCAAAAGGTTCATGTATCGGATGTGTT
GGCTTTGGACTTCGTCTTGTTGCCCTTTTCTCGTCTCTCGTTTCTGTTCT
GTCTTTGCCTCTTTCGTACGAGCTCCCATGCCATCCCCTCTCGACTGCGG
TCTTACCTTTTCCTCTTTTTAAACTCCTCTTTTTTAATTTGCTCAATGTT
AGTTCATATTATTAGTAGTAATAGTATGGGTATTTAAATGCCATTGTGTT
ATATCTATTGCTGACAATACCACGAATGAACAAGGTCTTGAGGCCGTCGT
TTGCAGCTGTCAGCGTGTATACGTGCCTGCGTTAATTTGTTTTGGCTTGG
AGATTCGGGTTAGCTATTCAGATTAGCTCTATTTTTTTCATGTTGTGACC
CTCGTGGCTTATCATGTACCTTTTGTTGGATCAGGCACCCGTCGACGAGC
GAGCGTACGCCAGCGAAACCCCGAACGCCCTCTCACCGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig2976:10834..11574+

>mRNA_H-paniculata_contig2976.8084.1 ID=mRNA_H-paniculata_contig2976.8084.1|Name=mRNA_H-paniculata_contig2976.8084.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at H-paniculata_contig2976:10834..11574+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGCTGACAACAGTAGTACTGCTAGTAAGGTTGGCAGCAGTTTGAGAGC
CAGTTCGAGTAAGGGTATCGCTCGTGTTATCAGTGGCCGGGCGGATGCTA
GGAATGGGAAGGAGTACAATGTGAACGGCAAGGAGGAGGCTAGTGGTATG
GAGCATGACGACGAGTGGACCAAGTCAGCGTCGCATACAGATTATTCGGG
GAAGGGCAAGAAGGCTGACAACAGTAGTACTGCTAGTAAGGTTGGCAGCA
GTTTGAGAGCCAGTTCGAGTAAGGGTATCGCTCGTGTTATCAGTGGCCGG
GCGGATGCTAGGAATGGGAAGGAGTACAATGTGAACGGCAAGGAGGAGGC
TAGTGGTATGGAGCATGACGACGAGTGGACCAAGTCAGCGTCGCATACAG
ATTATTCGGGGAAGGGCAAGGCACCCGTCGACGAGCGAGCGTACGCCAGC
GAAACCCCGAACGCCCTCTCACCGGAGGCACCCGTCGACGAGCGAGCGTA
CGCCAGCGAAACCCCGAACGCCCTCTCACCGGAG
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