mRNA_H-paniculata_contig2976.8083.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2976.8083.1
Unique NamemRNA_H-paniculata_contig2976.8083.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2976.8083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2976contigH-paniculata_contig2976:10063..10769 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size708
Cds size705
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929907.7733748-CDS-H-paniculata_contig2976:10062..107671622929907.7733748-CDS-H-paniculata_contig2976:10062..10767Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2976 10063..10767 +
1691481064.568971-CDS-H-paniculata_contig2976:10062..107671691481064.568971-CDS-H-paniculata_contig2976:10062..10767Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2976 10063..10767 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2976.8083.1prot_H-paniculata_contig2976.8083.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2976 10063..10767 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2976.8083.1

>prot_H-paniculata_contig2976.8083.1 ID=prot_H-paniculata_contig2976.8083.1|Name=mRNA_H-paniculata_contig2976.8083.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=235bp
AGVYQQRASEGPAGITRDTPQTVDDVGNWAGSGGGNNQEGLSGGIVGRVE
QTPKQDDPVGTSAVVVAGAATVVVAKVPDEKAPASTLAGGDLNSSAAAGS
AVSESSEEKPRTRSVAAEIAKRNALALGVGAKNARAAAAGTVGAERSSSR
SGRTRQPEPYEKSSAPAAPAVPPATGGLVSSARSVFEQRGGRGNGVPGGR
SSSSRSTAPHADKRSNGSGVGAGVAPFYGGGNGSW
back to top

mRNA from alignment at H-paniculata_contig2976:10063..10769+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2976.8083.1 ID=mRNA_H-paniculata_contig2976.8083.1|Name=mRNA_H-paniculata_contig2976.8083.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=707bp|location=Sequence derived from alignment at H-paniculata_contig2976:10063..10769+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGGCGTTTATCAACAAAGGGCCAGCGAAGGACCTGCTGGGATCACCCG
CGATACCCCCCAGACGGTTGACGATGTTGGCAACTGGGCTGGGTCAGGAG
GGGGTAACAATCAAGAAGGTCTCAGCGGCGGCATTGTGGGTAGGGTCGAG
CAGACTCCGAAACAAGATGACCCCGTCGGCACGTCAGCGGTCGTTGTGGC
CGGGGCGGCGACAGTGGTGGTGGCGAAGGTGCCTGACGAGAAGGCCCCGG
CATCGACTCTTGCTGGTGGTGATCTTAATAGTTCTGCCGCTGCTGGTTCC
GCTGTATCTGAGTCATCCGAGGAAAAACCGCGCACGCGCAGCGTTGCCGC
TGAAATTGCAAAGAGAAATGCGTTGGCGTTGGGAGTGGGGGCGAAAAACG
CGCGTGCCGCTGCCGCCGGTACCGTGGGTGCTGAGAGATCATCATCCCGG
AGTGGCCGGACTCGTCAGCCAGAACCATACGAGAAAAGTTCTGCCCCCGC
TGCCCCTGCTGTTCCCCCTGCCACGGGGGGGCTGGTGTCTTCCGCGAGGA
GCGTATTCGAACAGCGCGGTGGTAGGGGCAATGGCGTCCCGGGTGGGCGC
TCGTCTTCTTCTAGGTCGACAGCGCCACATGCAGACAAGCGGAGCAACGG
GTCGGGGGTTGGCGCCGGTGTGGCACCTTTTTACGGGGGCGGTAATGGAA
GTTGGAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2976:10063..10769+

>mRNA_H-paniculata_contig2976.8083.1 ID=mRNA_H-paniculata_contig2976.8083.1|Name=mRNA_H-paniculata_contig2976.8083.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1410bp|location=Sequence derived from alignment at H-paniculata_contig2976:10063..10769+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGGCGTTTATCAACAAAGGGCCAGCGAAGGACCTGCTGGGATCACCCG
CGATACCCCCCAGACGGTTGACGATGTTGGCAACTGGGCTGGGTCAGGAG
GGGGTAACAATCAAGAAGGTCTCAGCGGCGGCATTGTGGGTAGGGTCGAG
CAGACTCCGAAACAAGATGACCCCGTCGGCACGTCAGCGGTCGTTGTGGC
CGGGGCGGCGACAGTGGTGGTGGCGAAGGTGCCTGACGAGAAGGCCCCGG
CATCGACTCTTGCTGGTGGTGATCTTAATAGTTCTGCCGCTGCTGGTTCC
GCTGTATCTGAGTCATCCGAGGAAAAACCGCGCACGCGCAGCGTTGCCGC
TGAAATTGCAAAGAGAAATGCGTTGGCGTTGGGAGTGGGGGCGAAAAACG
CGCGTGCCGCTGCCGCCGGTACCGTGGGTGCTGAGAGATCATCATCCCGG
AGTGGCCGGACTCGTCAGCCAGAACCATACGAGAAAAGTTCTGCCCCCGC
TGCCCCTGCTGTTCCCCCTGCCACGGGGGGGCTGGTGTCTTCCGCGAGGA
GCGTATTCGAACAGCGCGGTGGTAGGGGCAATGGCGTCCCGGGTGGGCGC
TCGTCTTCTTCTAGGTCGACAGCGCCACATGCAGACAAGCGGAGCAACGG
GTCGGGGGTTGGCGCCGGTGTGGCACCTTTTTACGGGGGCGGTAATGGAA
GTTGGGCGGGCGTTTATCAACAAAGGGCCAGCGAAGGACCTGCTGGGATC
ACCCGCGATACCCCCCAGACGGTTGACGATGTTGGCAACTGGGCTGGGTC
AGGAGGGGGTAACAATCAAGAAGGTCTCAGCGGCGGCATTGTGGGTAGGG
TCGAGCAGACTCCGAAACAAGATGACCCCGTCGGCACGTCAGCGGTCGTT
GTGGCCGGGGCGGCGACAGTGGTGGTGGCGAAGGTGCCTGACGAGAAGGC
CCCGGCATCGACTCTTGCTGGTGGTGATCTTAATAGTTCTGCCGCTGCTG
GTTCCGCTGTATCTGAGTCATCCGAGGAAAAACCGCGCACGCGCAGCGTT
GCCGCTGAAATTGCAAAGAGAAATGCGTTGGCGTTGGGAGTGGGGGCGAA
AAACGCGCGTGCCGCTGCCGCCGGTACCGTGGGTGCTGAGAGATCATCAT
CCCGGAGTGGCCGGACTCGTCAGCCAGAACCATACGAGAAAAGTTCTGCC
CCCGCTGCCCCTGCTGTTCCCCCTGCCACGGGGGGGCTGGTGTCTTCCGC
GAGGAGCGTATTCGAACAGCGCGGTGGTAGGGGCAATGGCGTCCCGGGTG
GGCGCTCGTCTTCTTCTAGGTCGACAGCGCCACATGCAGACAAGCGGAGC
AACGGGTCGGGGGTTGGCGCCGGTGTGGCACCTTTTTACGGGGGCGGTAA
TGGAAGTTGG
back to top