mRNA_H-paniculata_contig2974.8076.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2974.8076.1
Unique NamemRNA_H-paniculata_contig2974.8076.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2974.8076.1 vs. uniprot
Match: D7FK57_ECTSI (Zinc finger, TAZ-type n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK57_ECTSI)

HSP 1 Score: 493 bits (1270), Expect = 9.740e-161
Identity = 244/291 (83.85%), Postives = 263/291 (90.38%), Query Frame = 1 
Query:   25 GKGGVKRARPLAGTRAP-PXXXXXAPTSRQELPPGCGPPSPGLKGIFGHEMDESELEGATDGVEHLAASTASKRLTALSSAMPKELASHVQALRLDYLVQKVRPILTKLMSAGTGPQRGLFNVPVDPVKLGIPDYFKRVPHPMDLGTVKARLLSMGYTSPEAFAADIRLVFTNAISFNPESHFVHTWAVHLLNEFDQEYSKQLGKLDENWAKSLNHSCQLCQGQTCTLCGDKCLKLEPPVIICQHCNKRVVRGGVYHITRDGCRLWCSRCHPGLPPELPIDGDPETLAGSE 894
            GK GVKRARPLA +RA  PXXXXXAPTSRQELPPGCGPPSP L  IFG ++D+ ELE A DG EH+  S AS+R+TALS+A PKELASHVQALRLDYLVQKVRPILTKLMS+GTGPQRGLFNVPVDP+KLGIPDYFKRVPHPMDLGT+K+RLLSM YT+PE FA+D+RLVF NAI FNPE+HFVHTWAV LLNEFDQEYSKQ+GKLDE WAKSL+HSCQLCQGQTCTLCGDKCLKLEPPVIIC HCNKRVVRGGVYHITRDGCRLWCSRCHPGLPPELP DGDPE +   E
Sbjct:  500 GKSGVKRARPLAASRASQPXXXXXAPTSRQELPPGCGPPSPSLAAIFGRQVDKGELETAHDGTEHVQTSLASRRVTALSAAAPKELASHVQALRLDYLVQKVRPILTKLMSSGTGPQRGLFNVPVDPLKLGIPDYFKRVPHPMDLGTIKSRLLSMSYTTPEEFASDVRLVFKNAIGFNPETHFVHTWAVQLLNEFDQEYSKQIGKLDEGWAKSLSHSCQLCQGQTCTLCGDKCLKLEPPVIICHHCNKRVVRGGVYHITRDGCRLWCSRCHPGLPPELPTDGDPEGIVAEE 790
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BLAST of mRNA_H-paniculata_contig2974.8076.1 vs. uniprot
Match: A0A6H5L4V8_9PHAE (Histone acetyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4V8_9PHAE)

HSP 1 Score: 491 bits (1263), Expect = 5.100e-152
Identity = 251/321 (78.19%), Postives = 274/321 (85.36%), Query Frame = 1 
Query:   28 KGGVKRARPLAGTRAP-PXXXXXAPTSRQELPPGCGPPSPGLKGIFGHEMDESELEGATDGVEHLAASTASKRLTALSSAMPKELASHVQALRLDYLVQKVRPILTKLMSAGTGPQRGLFNVPVDPVKLGIPDYFKRVPHPMDLGTVKARLLSMGYTSPEAFAADIRLVFTNAISFNPESHFVHTWAVHLLNEFDQEYSKQLGKLDENWAKSLNHSCQLCQGQTCTLCGDKCLKLEPPVIICQHCNKRVVRGGVYHITRDGCRLWCSRCHPGLPPELPIDGDPETLAGSEG--GDADPITASGGTEAAGEGNDAGGPGAEC 981
            K GVKRARPLA +RA  PXXXXXAPTSRQELPPGCGPPSP L  IFG ++D+ ELE A DG EH+  S AS+R+TALS+A PKELASHVQALRLDYLVQKVRPILTKLMS+GTGPQRGLFNVPVDP+KLGIPDYFKRVPHPMDLGT+K+RLLSM Y +PE FA+D+RLVF NAI FNPE+HFVHTWAV LLNEFDQEYSKQ+GKLDE WAKSL+HSCQLCQGQTCTLCGDKCLKLEPPVIIC HCNKRVVRGGVYHITRDGCRLWCSRCHPGLPPELP DGDPE +   E   G    + ++GG    G+  D GG  A C
Sbjct:  489 KSGVKRARPLAASRASQPXXXXXAPTSRQELPPGCGPPSPSLAAIFGRQVDKEELETAHDGTEHVQTSLASRRVTALSAAAPKELASHVQALRLDYLVQKVRPILTKLMSSGTGPQRGLFNVPVDPLKLGIPDYFKRVPHPMDLGTIKSRLLSMSYATPEEFASDVRLVFKNAIGFNPETHFVHTWAVQLLNEFDQEYSKQIGKLDEGWAKSLSHSCQLCQGQTCTLCGDKCLKLEPPVIICHHCNKRVVRGGVYHITRDGCRLWCSRCHPGLPPELPTDGDPEGIVAEETAEGGGSSVASTGG----GDCGDCGGAAASC 805
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BLAST of mRNA_H-paniculata_contig2974.8076.1 vs. uniprot
Match: A0A835ZGH1_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGH1_9STRA)

HSP 1 Score: 231 bits (590), Expect = 4.080e-64
Identity = 123/236 (52.12%), Postives = 155/236 (65.68%), Query Frame = 1 
Query:  223 ASTASKRLTALSSAMPKELASHVQALRLDYLVQKVRPILTKLMSAGTGPQRGLFNVPVDPVKLGIPDYFKRVPHPMDLGTVKARLLSMGYTSPEAFAADIRLVFTNAISFNPESHFVHTWAVHLLNEFDQEYSKQLGKLDENWAKSLNHSCQLCQGQTCTLCGDKCLKLEPPVIICQH-CNKRVVRGGVYHITRDGCRLWCSRCHPGLPPELP--------------IDGDPETLA 885
            A+ AS  L+ALS A P++L SH+QALR D++++ +RP+L +LMS  T  + GLFN PVDPV L IP+Y   +  PMD GTVK RL S+ Y   +AFAAD RLV +NAI+FNP SH VH  AV L  EFD EYSK   +L  +  K   H C LCQGQTC LCGDKCL+LEPPV+IC   C+ R+ RG V++++ D CR+WC +CH  LP ELP              +DG PE  A
Sbjct:    2 ATDASLSLSALSVATPEDLVSHLQALRRDFILRVLRPVLNRLMSH-TSNRNGLFNTPVDPVALNIPNYLDVISQPMDFGTVKCRLFSLEYDEADAFAADARLVLSNAITFNPPSHPVHQCAVALQAEFDAEYSKAQTRLVRDAQKKDEHHCTLCQGQTCALCGDKCLRLEPPVLICHGPCSARIKRGCVFYVSPDACRVWCQKCHAQLPAELPEEPNECESDDEDGVVDGAPEAAA 236
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BLAST of mRNA_H-paniculata_contig2974.8076.1 vs. uniprot
Match: A0A812UDS9_9DINO (GTE12 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812UDS9_9DINO)

HSP 1 Score: 181 bits (460), Expect = 2.700e-46
Identity = 93/204 (45.59%), Postives = 128/204 (62.75%), Query Frame = 1 
Query:  220 AASTASKRLTALSSAMPKELASHVQALRLDYLVQKVRPILTKLMSAGTGPQRGLFNVPVDPVKLGIPDYFKRVPHPMDLGTVKARLLSMGYTSPEAFAADIRLVFTNAISFNPESHFVHTWAVHLLNEFDQEYSKQLGKLDENWAKSLNHSCQLCQGQTCTLCGDKCLKLEPPVIICQHCNKRVVRGGVYHITRDGCRLWCSRC 831
            AA   S  LT L+   P  +A HV ALR +   ++ RP+L ++M        G+FN PVDPV+LGIPDY   V +PMDLGT++ RL ++ YTS ++FAADIRLVF NAI +NP +H VH  A  +  +FD+  ++   K D++ A+  +HSC  C G  C LCG+KCLK +PPV+ C  C  R+ RG  ++   DG R WC +C
Sbjct:  113 AADRMSVALTPLARLDPPAIARHVHALRAEVFARRFRPLLARVMENPLNG--GVFNSPVDPVRLGIPDYPTIVRNPMDLGTIRQRLEALRYTSTDSFAADIRLVFANAIRYNPATHQVHVTATKMREDFDRTITRHEAKADQDAARKASHSCGFCHGSVCGLCGEKCLKFDPPVLSCDCCGGRIRRGDTFYRASDGHR-WCVKC 313
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BLAST of mRNA_H-paniculata_contig2974.8076.1 vs. uniprot
Match: A0A7R9U6P2_9STRA (Histone acetyltransferase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U6P2_9STRA)

HSP 1 Score: 181 bits (459), Expect = 2.460e-45
Identity = 81/163 (49.69%), Postives = 112/163 (68.71%), Query Frame = 1 
Query:  373 RGLFNVPVDPVKLGIPDYFKRVPHPMDLGTVKARLLSMGYTSPEAFAADIRLVFTNAISFNPESHFVHTWAVHLLNEFDQEYSKQLGKLDENWAKSLNHSCQLCQGQTCTLCGDKCLKLEPPVIICQH-CNKRVVRGGVYHITRDGCRLWCSRCHPGLPPELP 858
            +G FN PVDPV L +PDYF+ +P P+DLGT+K RL ++ Y   + FA D+RLVF NA+ +NP  + VH  A  LL+EF+ ++SK + K+D+   +   H C  CQGQTC +CG+KCLK EP V+ICQ  C +R+ +G +Y+I  DG RLWC RC+  LP  +P
Sbjct:    2 KGTFNSPVDPVALNLPDYFRVIPKPLDLGTIKQRLNALLYREVDTFAEDVRLVFRNAMRYNPAKNVVHEAAKTLLHEFEHDFSKMMSKMDKEDGRRAKHECPHCQGQTCVVCGEKCLKFEPAVLICQGACGQRIKKGQIYYIAPDGARLWCRRCYGSLPTVIP 164
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BLAST of mRNA_H-paniculata_contig2974.8076.1 vs. uniprot
Match: A0A5A8E306_CAFRO (Histone acetyltransferase n=8 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E306_CAFRO)

HSP 1 Score: 181 bits (460), Expect = 2.610e-45
Identity = 93/204 (45.59%), Postives = 128/204 (62.75%), Query Frame = 1 
Query:  220 AASTASKRLTALSSAMPKELASHVQALRLDYLVQKVRPILTKLMSAGTGPQRGLFNVPVDPVKLGIPDYFKRVPHPMDLGTVKARLLSMGYTSPEAFAADIRLVFTNAISFNPESHFVHTWAVHLLNEFDQEYSKQLGKLDENWAKSLNHSCQLCQGQTCTLCGDKCLKLEPPVIICQHCNKRVVRGGVYHITRDGCRLWCSRC 831
            AA   S  LT L+   P  +A HV ALR +   ++ RP+L ++M        G+FN PVDPV+LGIPDY   V +PMDLGT++ RL ++ YTS ++FAADIRLVF NAI +NP +H VH  A  +  +FD+  ++   K D++ A+  +HSC  C G  C LCG+KCLK +PPV+ C  C  R+ RG  ++   DG R WC +C
Sbjct:  570 AADRMSVALTPLARLDPPAIARHVHALRAEVFARRFRPLLARVMENPLNG--GVFNSPVDPVRLGIPDYPTIVRNPMDLGTIRQRLEALRYTSTDSFAADIRLVFANAIRYNPATHQVHVTATKMREDFDRTITRHEAKADQDAARKASHSCGFCHGSVCGLCGEKCLKFDPPVLSCDCCGGRIRRGDTFYRASDGHR-WCVKC 770
[Close]
BLAST of mRNA_H-paniculata_contig2974.8076.1 vs. uniprot
Match: A0A7S1U9I3_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U9I3_9STRA)

HSP 1 Score: 180 bits (456), Expect = 4.740e-45
Identity = 89/198 (44.95%), Postives = 125/198 (63.13%), Query Frame = 1 
Query:  277 LASHVQALRLDYLVQKVRPILTKLMSAGTGPQRGLFNVPVDPVKLGIPDYFKRVPHPMDLGTVKARLLSMGYTSPEAFAADIRLVFTNAISFNPESHFVHTWAVHLLNEFDQEYSKQLGKLDENWAKSLNHSCQLCQGQTCTLCGDKCLKLEPPVIICQH-CNKRVVRGGVYHITRDGCRLWCSRCHPGLPPELPIDG 867
            L +H+  LR + + + ++ IL+K+M       RG FN PVD V L +PDY + +  PMDLGT+K RL S+ Y   ++FAAD+RL F NA+ +NP  + VH  A  LL EF+ E++K L KLD+   +   H C+ C G TC +CGDKCLK EP V+ICQ  C++R+ +   Y++  DG RLWC RC+  LP  +P  G
Sbjct:  236 LEAHIVGLRREGMQRSLKAILSKIMLHTAN--RGTFNAPVDSVALRLPDYTRIITKPMDLGTIKLRLQSLAYRDMDSFAADVRLTFGNAMRYNPAKNNVHEAAKTLLGEFEHEFAKLLSKLDKEDGRREKHECEHCHGHTCVVCGDKCLKFEPAVLICQGPCSQRIKKAQTYYMAPDGARLWCQRCYGSLPTVIPAYG 431
[Close]
BLAST of mRNA_H-paniculata_contig2974.8076.1 vs. uniprot
Match: A0A7S2C9K0_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C9K0_9STRA)

HSP 1 Score: 179 bits (453), Expect = 1.700e-44
Identity = 95/209 (45.45%), Postives = 128/209 (61.24%), Query Frame = 1 
Query:  271 KELASHVQALRLDYLVQKVRPILTKLMSAGTGPQRGLFNVPVDPVKLGIPDYFKRVPHPMDLGTVKARLLSMGYTSPEAFAADIRLVFTNAISFNPESHFVHTWAVHLLNEFDQEYSKQLGKLDENWAKSLNHSCQLCQGQTCTLCGDKCLKLEPPVIICQH-CNKRVVRGGVYHITRDGCRLWCSRCHPGL-------PPELPIDGDP 873
            K L  HV  LR + +++  RPIL ++M+      RGLFN PVD V LG+PDY + V  PMD GT+K +L ++ Y   E F AD+RLV +NA+ +NP ++ VH  A  LL EF+ E  K   K+  +  +   H+C +CQG+TC LCG+KCLKL+P ++IC   C  R+ RG  Y + RDG R+WC RCH GL       P E   DGDP
Sbjct:  268 KTLFDHVAMLRTEPVLRVARPILQRIMAHNLN--RGLFNEPVDAVALGLPDYHRIVKRPMDFGTMKDQLYALHYERLEQFIADVRLVLSNAMVYNPSTNQVHINARQLLEEFEDELGKLGKKISRDTKRRAQHNCGVCQGRTCRLCGEKCLKLDPVMLICSGPCALRIKRGAPYFMMRDGSRIWCQRCHMGLSTVLSPSPSETEDDGDP 474
[Close]
BLAST of mRNA_H-paniculata_contig2974.8076.1 vs. uniprot
Match: A0A1V9ZU90_9STRA (Histone acetyltransferase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZU90_9STRA)

HSP 1 Score: 169 bits (429), Expect = 7.200e-42
Identity = 89/202 (44.06%), Postives = 122/202 (60.40%), Query Frame = 1 
Query:  244 LTALSSAMPKELASHVQALRLDYLVQKVRPILTKLMSAGTGPQRGLFNVPVDPVKLGIPDYFKRVPHPMDLGTVKARLLSMGYTSPEAFAADIRLVFTNAISFNPESHFVHTWAVHLLNEFDQEYSKQLGKLDENWAKSLNHSCQLCQGQTCTLCGDKCLKLEPPVIICQ-HCNKRVVRGGVYHITRDGCRLWCSRCHPGLP 846
            L+ L  A   +L   +Q LR + +   +  +++KLM   T   +G+FN PVDPV+L  P Y+  + HPMDLGT+K  L+++ Y S E  AADIRLVFTNA+ FNP  H VH  AV LL EF++EY+  L K  +   K   H C  CQG  C LC +KC+  EPP+++C   C +R+ R   Y +T DG   WC++C P LP
Sbjct:   40 LSPLDHASKAQLRQQLQDLRREKIAAPLLALVSKLMLHRTN--QGIFNAPVDPVRLVCPTYYDVIKHPMDLGTIKQNLVALAYVSAEHVAADIRLVFTNALLFNPPGHVVHETAVLLLKEFEKEYASYLRKERDLAIKRSEHHCPHCQGHVCGLCEEKCINFEPPLVMCLGKCGQRLRRHAAYFMTPDGQLNWCAKCVPKLP 239
[Close]
BLAST of mRNA_H-paniculata_contig2974.8076.1 vs. uniprot
Match: A0A7S3YAC7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YAC7_HETAK)

HSP 1 Score: 159 bits (402), Expect = 2.600e-41
Identity = 85/201 (42.29%), Postives = 124/201 (61.69%), Query Frame = 1 
Query:  244 LTALSSAMPKELASHVQALRLDYLVQKVRPILTKLMSAGTGPQRGLFNVPVDPVKLGIPDYFKRVPHPMDLGTVKARLLSMGYTSPEAFAADIRLVFTNAISFNPESHFVHTWAVHLLNEFDQEYSKQLGKLDENWAKSLNHSCQLCQGQTCTLCGDKCLKLEPPVIICQ-HCNKRVVRGGVYHITRDGCRLWCSRCHPGL 843
            L+AL  A  + + +HV  +R ++    +R  L +L+       RG+FN PVDPV LG+P Y + V  P+DLGTVK RLL   Y    AFAAD+RLVF NA++FNP  H V   A  L  EF+ E ++   K+  + A++  H+C  C G++C LCGDKCL+LEPP++ C   C  RV RG +Y+++ +G  +WC +C+  +
Sbjct:    2 LSALDGAGARAVYAHVVGVRAEHFHAYLRAPLQRLLQHPLN--RGVFNRPVDPVALGLPTYREVVRRPLDLGTVKTRLLRFEYPGVAAFAADVRLVFANALAFNPAGHPVAKAARALGGEFEAELARAADKVRRDHARAGRHACGRCAGRSCGLCGDKCLRLEPPLVTCTGRCRGRVKRGALYYVSSEGL-VWCQKCYSSI 199
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2974.8076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FK57_ECTSI9.740e-16183.85Zinc finger, TAZ-type n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5L4V8_9PHAE5.100e-15278.19Histone acetyltransferase n=1 Tax=Ectocarpus sp. C... [more]
A0A835ZGH1_9STRA4.080e-6452.12Histone acetyltransferase (Fragment) n=1 Tax=Tribo... [more]
A0A812UDS9_9DINO2.700e-4645.59GTE12 protein (Fragment) n=1 Tax=Symbiodinium sp. ... [more]
A0A7R9U6P2_9STRA2.460e-4549.69Histone acetyltransferase n=1 Tax=Pinguiococcus py... [more]
A0A5A8E306_CAFRO2.610e-4545.59Histone acetyltransferase n=8 Tax=Cafeteria roenbe... [more]
A0A7S1U9I3_9STRA4.740e-4544.95Histone acetyltransferase (Fragment) n=1 Tax=Phaeo... [more]
A0A7S2C9K0_9STRA1.700e-4445.45Histone acetyltransferase (Fragment) n=1 Tax=Dicty... [more]
A0A1V9ZU90_9STRA7.200e-4244.06Histone acetyltransferase n=1 Tax=Achlya hypogyna ... [more]
A0A7S3YAC7_HETAK2.600e-4142.29Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2974contigH-paniculata_contig2974:2976..6594 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score498.8
Seed ortholog evalue3e-138
Seed eggNOG ortholog2880.D7FK57
KEGG koko:K04498,ko:K11684,ko:K22261
KEGG Pathwayko04024,ko04066,ko04068,ko04110,ko04310,ko04330,ko04350,ko04520,ko04630,ko04720,ko04916,ko04919,ko04922,ko05016,ko05152,ko05161,ko05164,ko05165,ko05166,ko05167,ko05168,ko05169,ko05200,ko05203,ko05206,ko05211,ko05215,map04024,map04066,map04068,map04110,map04310,map04330,map04350,map04520,map04630,map04720,map04916,map04919,map04922,map05016,map05152,map05161,map05164,map05165,map05166,map05167,map05168,map05169,map05200,map05203,map05206,map05211,map05215
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006914,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0030674,GO:0043621,GO:0044237,GO:0044248,GO:0044424,GO:0044464,GO:0060090,GO:0061919
EggNOG free text desc.histone acetyltransferase activity
EggNOG OGsCOG5076@1,KOG1474@2759,KOG1778@2759
Ec32 ortholog descriptionCBP-type histone acetylase, bromodomain and PHD zinc finger protein
Ec32 orthologEc-04_005740.1
EC2.3.1.48
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03000,ko03029,ko03036,ko04131
Exons6
Model size1543
Cds size1539
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2974.8076.1prot_H-paniculata_contig2974.8076.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2974 2978..6594 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929907.3119094-CDS-H-paniculata_contig2974:2977..37351622929907.3119094-CDS-H-paniculata_contig2974:2977..3735Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2974 2978..3735 -
1691481064.3691988-CDS-H-paniculata_contig2974:2977..37351691481064.3691988-CDS-H-paniculata_contig2974:2977..3735Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2974 2978..3735 -
1622929907.331226-CDS-H-paniculata_contig2974:4024..41961622929907.331226-CDS-H-paniculata_contig2974:4024..4196Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2974 4025..4196 -
1691481064.3846776-CDS-H-paniculata_contig2974:4024..41961691481064.3846776-CDS-H-paniculata_contig2974:4024..4196Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2974 4025..4196 -
1622929907.3515153-CDS-H-paniculata_contig2974:4529..46821622929907.3515153-CDS-H-paniculata_contig2974:4529..4682Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2974 4530..4682 -
1691481064.393761-CDS-H-paniculata_contig2974:4529..46821691481064.393761-CDS-H-paniculata_contig2974:4529..4682Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2974 4530..4682 -
1622929907.3647513-CDS-H-paniculata_contig2974:4882..50441622929907.3647513-CDS-H-paniculata_contig2974:4882..5044Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2974 4883..5044 -
1691481064.408097-CDS-H-paniculata_contig2974:4882..50441691481064.408097-CDS-H-paniculata_contig2974:4882..5044Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2974 4883..5044 -
1622929907.3878624-CDS-H-paniculata_contig2974:5193..53761622929907.3878624-CDS-H-paniculata_contig2974:5193..5376Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2974 5194..5376 -
1691481064.4163759-CDS-H-paniculata_contig2974:5193..53761691481064.4163759-CDS-H-paniculata_contig2974:5193..5376Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2974 5194..5376 -
1622929907.4033852-CDS-H-paniculata_contig2974:6483..65941622929907.4033852-CDS-H-paniculata_contig2974:6483..6594Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2974 6484..6594 -
1691481064.4250402-CDS-H-paniculata_contig2974:6483..65941691481064.4250402-CDS-H-paniculata_contig2974:6483..6594Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2974 6484..6594 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2974.8076.1

>prot_H-paniculata_contig2974.8076.1 ID=prot_H-paniculata_contig2974.8076.1|Name=mRNA_H-paniculata_contig2974.8076.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=513bp
GTKRGGKGGKGGVKRARPLAGTRAPPPPPPPAPTSRQELPPGCGPPSPGL
KGIFGHEMDESELEGATDGVEHLAASTASKRLTALSSAMPKELASHVQAL
RLDYLVQKVRPILTKLMSAGTGPQRGLFNVPVDPVKLGIPDYFKRVPHPM
DLGTVKARLLSMGYTSPEAFAADIRLVFTNAISFNPESHFVHTWAVHLLN
EFDQEYSKQLGKLDENWAKSLNHSCQLCQGQTCTLCGDKCLKLEPPVIIC
QHCNKRVVRGGVYHITRDGCRLWCSRCHPGLPPELPIDGDPETLAGSEGG
DADPITASGGTEAAGEGNDAGGPGAECGGGEGVSARRREGENEDGQPQVG
ADADMSAREDVEVSGGVLVNGGGISTAAEAGAILNANANGARSASSVSIQ
AVAATAVDDTPSVSASAALPAAASASSSSLPTPATSSPAPRAEMVVTPAA
QAVRAVLSTGVAMAGVVGPEGRGSGVPTVSCATEVAAAPLGFSSGDARRG
SDVGSGTGATGAG
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mRNA from alignment at H-paniculata_contig2974:2976..6594-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2974.8076.1 ID=mRNA_H-paniculata_contig2974.8076.1|Name=mRNA_H-paniculata_contig2974.8076.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3619bp|location=Sequence derived from alignment at H-paniculata_contig2974:2976..6594- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTACTAAGAGGGGTGGAAAGGGGGGGAAGGGTGGGGTGAAGCGTGCGCG
TCCCCTGGCAGGAACACGAGCGCCGCCGCCCCCTCCCCCGCCCGCCCCCA
CGAGTCGACAGGTGTGTTTTTGTGTAGTTGTCGTTGATGAACATTGTGTA
TGTCCTTAGCGCTAACAACAACTGCCCGCCTTCTGAACTAGTTGTTCATT
CGTATGGTTGATTTGTAAATAAACGTAGCTGTTTGTTGGGTTTTTTCTCC
ACATGGGTGGATCTGAGGCAAGTAGGTAGCTGACACCTGGTCCTTCTTCT
GTTCAGGGTGTTATACCGTTATTGTCTCGGGTAGCGTGCCCAGCCTAGTA
TCTTTGGTGTTGTGCCTCTTGTGGCATCTTGTTTCAGTACATGCTTACGT
TTTACACGTAGTGGCGGCCAAACGAGACGTATTCGGAAATTTTCTACTCG
ATGTTTTTATTGTTGTGGATAAAGACTTGGGCGCCTAGTGCCCTAAGCCA
TTGTTTTTTCTGAGAGATGTGTGAGGTTTCGAATTTCCTAATGTTTTAGC
GAGCACTACGGCGGAGAAAATAGTGGCGTGTGATGAGATTTTTTTTTCAA
GTGTATGGTTTTGCCCATGAGGACTGCCGTTCTTCACAGGTGAAGAAGTT
TAGCGTGTTGGCTTACCGTTTGTGCTGTATCGATGCTTGTTGAATCGATG
GGTGAAGTTTTCATCATACACTTGTAAGTAGCGTGATTTGAATGTCAAAC
GTATCTTGATGTCAGTGTTAGCTTTTTCATGGGCCCATGTTGTGATGATG
TTGACCATCTGCAAGGACTGGTTGGCGAAGAGCTCTGCTCGACGTGTCCC
CTCAGTCTCCTTGGAGCTTGAGGATTGTTGTCCACTGTGATGTGCATCCT
CGCTTCTGAAACAGCACAACGTATAACAGCGCCCACGACATGATGATGGG
AACAGGCAGCTGCCGTTGTTCAAATAGCCAGCCTCATAGATATAACTGTT
TATGAGGATGAGCGAAAATATGACATGGTTCTGCGCACAACTGCAGTAGT
CTATTTTTATGTCTTGATTTCATAGCTTGTATGTATTGCCAGCTTCATTT
TTTGTTCCGAAATAGCCTTCGGCCCCCCCAAGGAGTAAAAAAATAAATAC
CCCAGCTTACACAAAGCAAATTTCGCTGCCGGTGTTGATATTGATGTAAT
GAACCAACTGATCCACAGGAGCTGCCGCCAGGGTGCGGGCCGCCTTCGCC
CGGGCTCAAAGGTATTTTTGGACACGAGATGGACGAGTCGGAGCTTGAAG
GGGCCACGGATGGGGTGGAGCACCTCGCGGCCTCGACCGCCTCGAAACGA
TTAACGGCTCTTTCGTCGGCCATGCCCAAGGAACTTGCATCGCACGTGCA
GGTCTGTGTAAAGTGCGGTTTCATTTTCATTCCGTTGCTTCTGGATGTGC
CACACGAAGAACGTGTATCTCTTGCATGATCTTAGCTAAAAAAAGATAAT
ACGTGACCCATATGTTTTTATGTGCATCCTCATTGGTCTCGTCCGTTCAG
GCTTTGAGACTCGACTACCTTGTCCAGAAGGTGCGGCCGATCTTGACCAA
GCTCATGTCTGCCGGTACGGGACCTCAGCGCGGATTGTTCAACGTTCCTG
TAGATCCGGTGAAGTTGGGCATTCCTGACTACTTCAAGCGTGTACCCCAT
CCGATGGATCTGGTGAGATATTTTGAAAGACAGACGTCGTATCATGCCAC
GGTGAAAGTGAACTCTACAAATACATGTTCTTATTGGGTGTTGTCAAATT
GTTGGTGGTTATATGTAATCATTATTGCCTTGTTCTGTTTGTCTTCTGAG
TTGTTTTTGTTTCTGTTTTTTCATTTCGTTCGCTTCTCGTTTTTTTACCT
GGCTCGTGTTAGGGAACGGTCAAGGCCCGACTTCTTTCGATGGGCTACAC
CTCTCCGGAGGCCTTTGCGGCAGACATTCGCCTTGTGTTCACCAATGCGA
TTAGTTTCAACCCGGAGTCGCATTTCGTGCACACGTGGGCAGTGCATCTT
CTCAATGAGTTTGACGTGAGTAATTTATCTCCCAGTTGGCCACGATACTT
CTTGCCGGTTGTTCCAATGACCTTCACGCTGTATTAGCTCCCCCCCCCTC
CCGCGCGCGCTGTGAGTATGTTTACGATTCTTTTATGGTCTTGTAAAACC
GAATCGTGATATCCGTATGTTTGAATGAATGTCGAAATTGTATGTTGCCA
TAGGCTGTTCATCAATTATACAGTCCTACTAGCTTATTATTCCTTCAGTA
AGTGGTACCCAATCGTGCACGTCCATGAGTCTGCTCCTGTTTTTCCCCAT
TCTTTTCCTGGACTTGTGAATTCTTGATCTTGGACTTGAAACCACCAGCA
AGAATACTCGAAACAGCTGGGGAAGCTGGACGAGAACTGGGCGAAGTCTT
TGAACCACTCGTGTCAGCTCTGTCAGGGGCAGACGTGCACTCTTTGTGGC
GACAAGTGTCTTAAGCTCGAGCCGCCGGTCATCATTTGCCAGCATTGCAA
CAAACGTGTCGTCCGAGGAGGTCAGTTTGTGACAACGATCGTTTTGGAAC
AGTTGAAAATCATCAATTCGAGGGGAGTCTCAATCGGATTCTTGAAGGAC
CTCGTGCCTGACTGTAGGTCCATTGAATTGTTGTGTGTGGGTCATGAGCC
TTTGCATAAATGGGCACGAGGACTTCACACGTTCTGCTAGGGCGTGTAGT
GCCTAAACGATACCTACAACATTTTGGTTCATGTTCATCGGTTTTGAAAC
TTCGAATAAAACACAGGTTTTTCAACATCAATTACTGCACGCCTTCTTTT
CACCACCAGGTGTTTACCACATCACGCGCGATGGATGTAGACTGTGGTGT
AGCCGTTGCCATCCCGGTCTTCCTCCAGAGCTTCCTATAGATGGCGATCC
AGAAACACTTGCGGGGTCAGAAGGGGGTGACGCCGACCCTATCACAGCTA
GCGGCGGGACGGAAGCGGCTGGTGAAGGAAATGATGCCGGAGGCCCAGGG
GCAGAATGTGGCGGCGGTGAGGGAGTGTCTGCTAGGCGGCGGGAAGGAGA
GAATGAAGACGGACAGCCGCAGGTTGGTGCCGATGCCGATATGTCTGCGC
GAGAAGACGTTGAGGTGTCGGGTGGTGTCTTGGTGAACGGTGGTGGTATC
AGCACTGCAGCAGAAGCAGGAGCAATCTTGAACGCCAACGCGAATGGGGC
GAGAAGCGCATCCTCCGTGTCGATTCAAGCCGTTGCTGCTACTGCTGTCG
ACGACACACCGTCAGTGTCGGCTTCCGCCGCCCTCCCGGCGGCGGCTTCG
GCGAGCTCTTCAAGTTTACCCACACCCGCGACTTCATCACCTGCCCCCCG
TGCGGAAATGGTGGTGACGCCCGCAGCACAAGCGGTACGTGCCGTACTTT
CCACCGGTGTGGCGATGGCGGGTGTGGTGGGGCCTGAAGGGCGTGGTAGT
GGGGTTCCTACCGTAAGCTGTGCAACTGAAGTTGCTGCTGCTCCGTTAGG
CTTTAGCTCTGGAGACGCACGACGAGGGAGTGACGTCGGAAGCGGGACAG
GGGCAACAGGGGCTGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig2974:2976..6594-

>mRNA_H-paniculata_contig2974.8076.1 ID=mRNA_H-paniculata_contig2974.8076.1|Name=mRNA_H-paniculata_contig2974.8076.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3078bp|location=Sequence derived from alignment at H-paniculata_contig2974:2976..6594- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTACTAAGAGGGGTGGAAAGGGGGGGAAGGGTGGGGTGAAGCGTGCGCG
TCCCCTGGCAGGAACACGAGCGCCGCCGCCCCCTCCCCCGCCCGCCCCCA
CGAGTCGACAGGGTACTAAGAGGGGTGGAAAGGGGGGGAAGGGTGGGGTG
AAGCGTGCGCGTCCCCTGGCAGGAACACGAGCGCCGCCGCCCCCTCCCCC
GCCCGCCCCCACGAGTCGACAGGAGCTGCCGCCAGGGTGCGGGCCGCCTT
CGCCCGGGCTCAAAGGTATTTTTGGACACGAGATGGACGAGTCGGAGCTT
GAAGGGGCCACGGATGGGGTGGAGCACCTCGCGGCCTCGACCGCCTCGAA
ACGATTAACGGCTCTTTCGTCGGCCATGCCCAAGGAACTTGCATCGCACG
TGCAGGAGCTGCCGCCAGGGTGCGGGCCGCCTTCGCCCGGGCTCAAAGGT
ATTTTTGGACACGAGATGGACGAGTCGGAGCTTGAAGGGGCCACGGATGG
GGTGGAGCACCTCGCGGCCTCGACCGCCTCGAAACGATTAACGGCTCTTT
CGTCGGCCATGCCCAAGGAACTTGCATCGCACGTGCAGGCTTTGAGACTC
GACTACCTTGTCCAGAAGGTGCGGCCGATCTTGACCAAGCTCATGTCTGC
CGGTACGGGACCTCAGCGCGGATTGTTCAACGTTCCTGTAGATCCGGTGA
AGTTGGGCATTCCTGACTACTTCAAGCGTGTACCCCATCCGATGGATCTG
GCTTTGAGACTCGACTACCTTGTCCAGAAGGTGCGGCCGATCTTGACCAA
GCTCATGTCTGCCGGTACGGGACCTCAGCGCGGATTGTTCAACGTTCCTG
TAGATCCGGTGAAGTTGGGCATTCCTGACTACTTCAAGCGTGTACCCCAT
CCGATGGATCTGGGAACGGTCAAGGCCCGACTTCTTTCGATGGGCTACAC
CTCTCCGGAGGCCTTTGCGGCAGACATTCGCCTTGTGTTCACCAATGCGA
TTAGTTTCAACCCGGAGTCGCATTTCGTGCACACGTGGGCAGTGCATCTT
CTCAATGAGTTTGACGGAACGGTCAAGGCCCGACTTCTTTCGATGGGCTA
CACCTCTCCGGAGGCCTTTGCGGCAGACATTCGCCTTGTGTTCACCAATG
CGATTAGTTTCAACCCGGAGTCGCATTTCGTGCACACGTGGGCAGTGCAT
CTTCTCAATGAGTTTGACCAAGAATACTCGAAACAGCTGGGGAAGCTGGA
CGAGAACTGGGCGAAGTCTTTGAACCACTCGTGTCAGCTCTGTCAGGGGC
AGACGTGCACTCTTTGTGGCGACAAGTGTCTTAAGCTCGAGCCGCCGGTC
ATCATTTGCCAGCATTGCAACAAACGTGTCGTCCGAGGAGCAAGAATACT
CGAAACAGCTGGGGAAGCTGGACGAGAACTGGGCGAAGTCTTTGAACCAC
TCGTGTCAGCTCTGTCAGGGGCAGACGTGCACTCTTTGTGGCGACAAGTG
TCTTAAGCTCGAGCCGCCGGTCATCATTTGCCAGCATTGCAACAAACGTG
TCGTCCGAGGAGGTGTTTACCACATCACGCGCGATGGATGTAGACTGTGG
TGTAGCCGTTGCCATCCCGGTCTTCCTCCAGAGCTTCCTATAGATGGCGA
TCCAGAAACACTTGCGGGGTCAGAAGGGGGTGACGCCGACCCTATCACAG
CTAGCGGCGGGACGGAAGCGGCTGGTGAAGGAAATGATGCCGGAGGCCCA
GGGGCAGAATGTGGCGGCGGTGAGGGAGTGTCTGCTAGGCGGCGGGAAGG
AGAGAATGAAGACGGACAGCCGCAGGTTGGTGCCGATGCCGATATGTCTG
CGCGAGAAGACGTTGAGGTGTCGGGTGGTGTCTTGGTGAACGGTGGTGGT
ATCAGCACTGCAGCAGAAGCAGGAGCAATCTTGAACGCCAACGCGAATGG
GGCGAGAAGCGCATCCTCCGTGTCGATTCAAGCCGTTGCTGCTACTGCTG
TCGACGACACACCGTCAGTGTCGGCTTCCGCCGCCCTCCCGGCGGCGGCT
TCGGCGAGCTCTTCAAGTTTACCCACACCCGCGACTTCATCACCTGCCCC
CCGTGCGGAAATGGTGGTGACGCCCGCAGCACAAGCGGTACGTGCCGTAC
TTTCCACCGGTGTGGCGATGGCGGGTGTGGTGGGGCCTGAAGGGCGTGGT
AGTGGGGTTCCTACCGTAAGCTGTGCAACTGAAGTTGCTGCTGCTCCGTT
AGGCTTTAGCTCTGGAGACGCACGACGAGGGAGTGACGTCGGAAGCGGGA
CAGGGGCAACAGGGGCTGGGGTGTTTACCACATCACGCGCGATGGATGTA
GACTGTGGTGTAGCCGTTGCCATCCCGGTCTTCCTCCAGAGCTTCCTATA
GATGGCGATCCAGAAACACTTGCGGGGTCAGAAGGGGGTGACGCCGACCC
TATCACAGCTAGCGGCGGGACGGAAGCGGCTGGTGAAGGAAATGATGCCG
GAGGCCCAGGGGCAGAATGTGGCGGCGGTGAGGGAGTGTCTGCTAGGCGG
CGGGAAGGAGAGAATGAAGACGGACAGCCGCAGGTTGGTGCCGATGCCGA
TATGTCTGCGCGAGAAGACGTTGAGGTGTCGGGTGGTGTCTTGGTGAACG
GTGGTGGTATCAGCACTGCAGCAGAAGCAGGAGCAATCTTGAACGCCAAC
GCGAATGGGGCGAGAAGCGCATCCTCCGTGTCGATTCAAGCCGTTGCTGC
TACTGCTGTCGACGACACACCGTCAGTGTCGGCTTCCGCCGCCCTCCCGG
CGGCGGCTTCGGCGAGCTCTTCAAGTTTACCCACACCCGCGACTTCATCA
CCTGCCCCCCGTGCGGAAATGGTGGTGACGCCCGCAGCACAAGCGGTACG
TGCCGTACTTTCCACCGGTGTGGCGATGGCGGGTGTGGTGGGGCCTGAAG
GGCGTGGTAGTGGGGTTCCTACCGTAAGCTGTGCAACTGAAGTTGCTGCT
GCTCCGTTAGGCTTTAGCTCTGGAGACGCACGACGAGGGAGTGACGTCGG
AAGCGGGACAGGGGCAACAGGGGCTGGG
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