mRNA_H-paniculata_contig2971.8074.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2971.8074.1
Unique NamemRNA_H-paniculata_contig2971.8074.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2971.8074.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2971contigH-paniculata_contig2971:18298..18862 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size207
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929906.784838-CDS-H-paniculata_contig2971:18297..183341622929906.784838-CDS-H-paniculata_contig2971:18297..18334Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2971 18298..18334 +
1691481064.0663652-CDS-H-paniculata_contig2971:18297..183341691481064.0663652-CDS-H-paniculata_contig2971:18297..18334Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2971 18298..18334 +
1622929906.803102-CDS-H-paniculata_contig2971:18693..188601622929906.803102-CDS-H-paniculata_contig2971:18693..18860Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2971 18694..18860 +
1691481064.0781634-CDS-H-paniculata_contig2971:18693..188601691481064.0781634-CDS-H-paniculata_contig2971:18693..18860Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2971 18694..18860 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2971.8074.1prot_H-paniculata_contig2971.8074.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2971 18298..18860 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2971.8074.1

>prot_H-paniculata_contig2971.8074.1 ID=prot_H-paniculata_contig2971.8074.1|Name=mRNA_H-paniculata_contig2971.8074.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
TALSGNPFAVDQEQQQQQQQPQQQQQALVVLKDRRVMGPTFQMGDVRCHD
ITNTSVRVSWPKSTNKKH
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mRNA from alignment at H-paniculata_contig2971:18298..18862+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2971.8074.1 ID=mRNA_H-paniculata_contig2971.8074.1|Name=mRNA_H-paniculata_contig2971.8074.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=565bp|location=Sequence derived from alignment at H-paniculata_contig2971:18298..18862+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTGCTTTATCCGGCAACCCGTTCGCCGTAGATCAAGGTACTGCTGTAAT
GGTGGCTTCTCTTTCAATGTTCGGAGTCCAGACTCTTGGGATTTCTAGGA
GCTGATATCATCATTACGGTGATATTTGTGTAACGCCTTTGCGGATTTTT
CAGTGACGCTAAAAGCGCCCACGGTTGATCGGCGCTTGCGACTTTCACCA
AGGACGGGCAACGATAGGATTGCGATAGGATGAAAATTACTCCAACCACT
TCCAAGGGGTGAAAGCTTCCACATCTCTTTGATACGGTGGTTGACCACCG
GCACACAGGAATAGGGCAAATGTTTTCGAACCACGAGTGTGTAACACATG
CACACCCCGACCTTCCTATTTTGTCACTGGGAACTCTCGTTTACAGAACA
ACAACAGCAACAACAACAACCGCAGCAACAACAACAAGCTCTGGTTGTCC
TAAAGGATCGTAGGGTGATGGGCCCTACATTTCAGATGGGTGATGTGCGA
TGCCACGATATCACCAACACGAGCGTTCGAGTATCGTGGCCAAAATCAAC
GAACAAAAAGCACCC
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Coding sequence (CDS) from alignment at H-paniculata_contig2971:18298..18862+

>mRNA_H-paniculata_contig2971.8074.1 ID=mRNA_H-paniculata_contig2971.8074.1|Name=mRNA_H-paniculata_contig2971.8074.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at H-paniculata_contig2971:18298..18862+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTGCTTTATCCGGCAACCCGTTCGCCGTAGATCAAGACTGCTTTATCCG
GCAACCCGTTCGCCGTAGATCAAGAACAACAACAGCAACAACAACAACCG
CAGCAACAACAACAAGCTCTGGTTGTCCTAAAGGATCGTAGGGTGATGGG
CCCTACATTTCAGATGGGTGATGTGCGATGCCACGATATCACCAACACGA
GCGTTCGAGTATCGTGGCCAAAATCAACGAACAAAAAGCACAACAACAAC
AGCAACAACAACAACCGCAGCAACAACAACAAGCTCTGGTTGTCCTAAAG
GATCGTAGGGTGATGGGCCCTACATTTCAGATGGGTGATGTGCGATGCCA
CGATATCACCAACACGAGCGTTCGAGTATCGTGGCCAAAATCAACGAACA
AAAAGCAC
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