mRNA_H-paniculata_contig29702.8073.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig29702.8073.1
Unique NamemRNA_H-paniculata_contig29702.8073.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29702.8073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig29702contigH-paniculata_contig29702:2..1346 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size403
Cds size339
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig29702.8073.1prot_H-paniculata_contig29702.8073.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig29702 968..1346 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929906.6951551-UTR-H-paniculata_contig29702:1..371622929906.6951551-UTR-H-paniculata_contig29702:1..37Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig29702 2..37 -
1691481064.0199234-UTR-H-paniculata_contig29702:1..371691481064.0199234-UTR-H-paniculata_contig29702:1..37Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig29702 2..37 -
1622929906.7142634-UTR-H-paniculata_contig29702:939..9671622929906.7142634-UTR-H-paniculata_contig29702:939..967Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig29702 940..967 -
1691481064.0288115-UTR-H-paniculata_contig29702:939..9671691481064.0288115-UTR-H-paniculata_contig29702:939..967Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig29702 940..967 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929906.7298083-CDS-H-paniculata_contig29702:967..10361622929906.7298083-CDS-H-paniculata_contig29702:967..1036Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29702 968..1036 -
1691481064.0380065-CDS-H-paniculata_contig29702:967..10361691481064.0380065-CDS-H-paniculata_contig29702:967..1036Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29702 968..1036 -
1622929906.742752-CDS-H-paniculata_contig29702:1076..13461622929906.742752-CDS-H-paniculata_contig29702:1076..1346Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29702 1077..1346 -
1691481064.0470765-CDS-H-paniculata_contig29702:1076..13461691481064.0470765-CDS-H-paniculata_contig29702:1076..1346Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29702 1077..1346 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig29702.8073.1

>prot_H-paniculata_contig29702.8073.1 ID=prot_H-paniculata_contig29702.8073.1|Name=mRNA_H-paniculata_contig29702.8073.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp
HTRRKRETACWPLGSFSRGRSSSSLFSARNPRLCLLETTPLFVHVKPSAR
AKLRQSPRSPSFTNHNHPHYSQLLHLETSQQPLSLSLSLSPVHYEDVLLR
CCWCHRRRVRRS*
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mRNA from alignment at H-paniculata_contig29702:2..1346-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig29702.8073.1 ID=mRNA_H-paniculata_contig29702.8073.1|Name=mRNA_H-paniculata_contig29702.8073.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1345bp|location=Sequence derived from alignment at H-paniculata_contig29702:2..1346- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATACAAGGAGGAAACGAGAAACCGCGTGCTGGCCGCTAGGAAGTTTCTC
CCGCGGGCGCTCTTCTTCTTCACTTTTCTCGGCCAGAAACCCGCGGTTAT
GTCTGCTGGAGACTACTCCCCTTTTTGTCCACGTCAAGCCATCGGCCCGC
GCCAAACTGAGACAGAGCCCCCGCTCCCCCTCATTCACAAATCACAACCA
CCCTCACTACTCTCAGCTGCTACACCTGGAAACTTCGCAACAACCTCTCT
CTCTCTCTCTCTCTCTCTCTTTCCTCCCTGCGAGCAATCAGTACATAGCA
AGCTTCTTATCCAGTACACTATGAAGACGTCCTTCTGCGCTGCTGCTGGT
GCCATCGCCGCAGGGTTCGTCGTTCCTAGTGCGCACGCCATGGTCGCCAC
GGCCCAGGTGAGCTCTACGGACAGTTGATGTAGATATGCAGCGCGAGAGA
TTTACATAACTGAAACCAACACACTCGATGAACGTCTGACAGCAGGTAGT
TGATCTTCGTCCAGTATCGAAGATACCTGGCGCATGATATCAAGTTCGAA
TTTTTCGGAGATCTCTCCCTTGTATTTAGCTGTTATCCATGCCTGTTGGT
TGGTCTCTAGTGCAACCTGCCATCGTCCAGAGATTTGCAAACGAAGTCCT
GTTCAACCATCCTACATATGATACGAGCACAGGGATCACGAGCACATGGG
GAATGTATCGGTCGCAACCATTACCCGAGTTATCTCCCAGAAACCCGTTC
CTCTGAATTCAAGGGAGTTTCTTAGCAGACACTACTGGCTGCGGGTGAAG
GTACTACGCACGAGTATGTACAGCGAGTATTATCGGTGGTACAATAACTT
GTTGATTCGCGATGTACCTCTCCCTACGGTGGGTACTTTGTGTCGCCCCT
CCCCCGTGAGGCAGTCACGGCTATTCAAGTTTAGACTAAGGGTAACACGG
CGTCGTATCTACCGCAGGTGGTACGCATCGTACTGTGATATTTGGTCACT
CGAACACTCCAGAAACATATCGTATTATTCTGGACTTATTGCACACGCCC
CGCACGGCAGGTAGGCATGAGTCAACCGTATGAGCAAGCCACGCCAGACC
ACTCAAAAGAAGAAGTCTCATATCGGACTCATAGCGGTCATGACTGGGAT
GATGCGACGTTTCCTCTGTGTGCAGCCTAACGCAGAAAATACGGTGATCT
CTGACTTTCCATACATATTGGACCATCTCAATATCACTATCCTCCTGGTT
CTAGGCGACACTACTCTCATATTTTCCCATCGACCTTGCTGGTGCCTTGT
CTTTTGCAGCAACGAATCACAGCCTTCAACCCCGAGGACTTCGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig29702:2..1346-

>mRNA_H-paniculata_contig29702.8073.1 ID=mRNA_H-paniculata_contig29702.8073.1|Name=mRNA_H-paniculata_contig29702.8073.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig29702:2..1346- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATACAAGGAGGAAACGAGAAACCGCGTGCTGGCCGCTAGGAAGTTTCTC
CCGCGGGCGCTCTTCTTCTTCACTTTTCTCGGCCAGAAACCCGCGGTTAT
GTCTGCTGGAGACTACTCCCCTTTTTGTCCACGTCAAGCCATCGGCCCGC
GCCAAACTGAGACAGAGCCCCCGCTCCCCCTCATTCACAAATCACAACCA
CCCTCACTACTCTCAGCTGCTACACCTGGAAACTTCGCAACAACCTCTCT
CTCTCTCTCTCTCTCTCTCTCATACAAGGAGGAAACGAGAAACCGCGTGC
TGGCCGCTAGGAAGTTTCTCCCGCGGGCGCTCTTCTTCTTCACTTTTCTC
GGCCAGAAACCCGCGGTTATGTCTGCTGGAGACTACTCCCCTTTTTGTCC
ACGTCAAGCCATCGGCCCGCGCCAAACTGAGACAGAGCCCCCGCTCCCCC
TCATTCACAAATCACAACCACCCTCACTACTCTCAGCTGCTACACCTGGA
AACTTCGCAACAACCTCTCTCTCTCTCTCTCTCTCTCTCTCCAGTACACT
ATGAAGACGTCCTTCTGCGCTGCTGCTGGTGCCATCGCCGCAGGGTTCGT
CGTTCCTAGCCAGTACACTATGAAGACGTCCTTCTGCGCTGCTGCTGGTG
CCATCGCCGCAGGGTTCGTCGTTCCTAG
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