mRNA_H-paniculata_contig2969.8067.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2969.8067.1
Unique NamemRNA_H-paniculata_contig2969.8067.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2969.8067.1 vs. uniprot
Match: D7G6W9_ECTSI (60S ribosomal protein L13a n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6W9_ECTSI)

HSP 1 Score: 362 bits (928), Expect = 4.050e-123
Identity = 180/198 (90.91%), Postives = 191/198 (96.46%), Query Frame = 1
Query:    1 MFDAPTVVDGRGHLLGRLASVVAKELLCGQKVVIVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPFHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDTKKRMVVPNALQVIRMTPGRRFCVLGRLSEEVGWPHSDLIKRLEAQRKIKSEAYYVEKKSAKQIKDKAEAEADFSAVAPVLEEFGF 594
            MF+AP  VDGRGHLLGRLASVVAKELL GQKVV+VRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGP+HFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYD KKRMVVPNALQVIRM PGRRFCVLGRLSEEVGWPH++LIKRLEAQRKIKSEAYYV+KK+AKQ+KDKA AEA+ +AVAPVLEE+GF
Sbjct:    1 MFEAPVTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDKKKRMVVPNALQVIRMAPGRRFCVLGRLSEEVGWPHAELIKRLEAQRKIKSEAYYVDKKAAKQLKDKATAEANLAAVAPVLEEYGF 198          
BLAST of mRNA_H-paniculata_contig2969.8067.1 vs. uniprot
Match: A0A835Z9N1_9STRA (60S ribosomal protein L13a n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9N1_9STRA)

HSP 1 Score: 286 bits (732), Expect = 2.290e-93
Identity = 139/197 (70.56%), Postives = 168/197 (85.28%), Query Frame = 1
Query:    1 MFDAPTVVDGRGHLLGRLASVVAKELLCGQKVVIVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPFHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDTKKRMVVPNALQVIRMTPGRRFCVLGRLSEEVGWPHSDLIKRLEAQRKIKSEAYYVEKKSAKQIKDKAEAEADFSAVAPVLEEFG 591
            + + P VVDGRGHLLGRLAS+VAK+LL GQKV++VR EQI ISGSLVRNKVKY Q++KKR NTNP RGPFHFRSPARIFWRT+RGM+P KT RG+ A+ARL  FEGIPAP+D +KRMVVP AL+V+R+ PGR+ CVLGRLS EVGW H DL++RLEA+RK++SEA+Y +KK+  Q++ KAEA AD SAV PVLE +G
Sbjct:    2 VLEKPVVVDGRGHLLGRLASIVAKQLLSGQKVIVVRAEQIVISGSLVRNKVKYAQFRKKRMNTNPARGPFHFRSPARIFWRTIRGMIPHKTHRGQLAMARLKAFEGIPAPFDKQKRMVVPAALKVLRLAPGRKHCVLGRLSTEVGWRHGDLVERLEAKRKVRSEAFYQKKKANAQLRVKAEAAADLSAVTPVLESYG 198          
BLAST of mRNA_H-paniculata_contig2969.8067.1 vs. uniprot
Match: W7TSL6_9STRA (60s ribosomal protein l13a n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSL6_9STRA)

HSP 1 Score: 263 bits (673), Expect = 3.120e-84
Identity = 133/200 (66.50%), Postives = 162/200 (81.00%), Query Frame = 1
Query:    4 FDAPTVV-DGRGHLLGRLASVVAKELLCGQKVVIVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPFHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDTKKRMVVPNALQVIRMTPGRRFCVLGRLSEEVGWPHSDLIKRLEAQRKIKSEAYYVEKKSAKQIKDKAEAEA--DFSAVAPVLEEFGF 594
            FD+  VV DGRGHLLGRL+S+VAKELL GQKVV+VRCE++ ISG LVRN  +YMQ+ +KR NTNPKRGPFH+R+P+RI WRT+RGMLP KT RG +ALARL+ FEGIPAPYDTKKR+VVP AL+++R+ PGRRFC L RL+ EVGW H DL+ RLEA+RKIK+EAYY +KK+    K  AE +A  + SAV  VL  FG+
Sbjct:    3 FDSKEVVIDGRGHLLGRLSSIVAKELLSGQKVVVVRCEELMISGGLVRNHTRYMQFLRKRTNTNPKRGPFHYRAPSRILWRTIRGMLPHKTFRGAQALARLTTFEGIPAPYDTKKRVVVPQALKILRLKPGRRFCTLSRLAHEVGWGHRDLVARLEAKRKIKAEAYYQQKKAGTAAKALAERKAASELSAVNNVLAGFGY 202          
BLAST of mRNA_H-paniculata_contig2969.8067.1 vs. uniprot
Match: A0A5J4Z3W8_PORPP (60S ribosomal protein L13a n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z3W8_PORPP)

HSP 1 Score: 259 bits (662), Expect = 8.660e-83
Identity = 126/197 (63.96%), Postives = 152/197 (77.16%), Query Frame = 1
Query:    1 MFDAPTVVDGRGHLLGRLASVVAKELLCGQKVVIVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPFHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDTKKRMVVPNALQVIRMTPGRRFCVLGRLSEEVGWPHSDLIKRLEAQRKIKSEAYYVEKKSAKQIKDKAEAEADFSAVAPVLEEFG 591
            M+++  VVD R HLLGRLAS+VAKELLCGQKVV+ RCE I +SG  +R K KY+ + +KR NTNP RGPFHFR+P+RIFWRTVRGMLP KT RG+EAL RL  FEGIP PYD  KRMVVP+AL+V+R+ P R+ CVLGRLS EVGW + D++ RLE +RK+ S AYY  KK+  ++K KA   AD S V PVLE FG
Sbjct:    1 MYESVVVVDARAHLLGRLASIVAKELLCGQKVVVTRCEAIEMSGRFIRKKNKYLMFLRKRMNTNPSRGPFHFRAPSRIFWRTVRGMLPHKTERGQEALGRLKVFEGIPPPYDKMKRMVVPDALRVVRLAPRRKHCVLGRLSHEVGWKYQDVLARLETKRKVHSAAYYQRKKALDKLKRKATESADLSKVTPVLEAFG 197          
BLAST of mRNA_H-paniculata_contig2969.8067.1 vs. uniprot
Match: A0A7S1TQI9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQI9_9STRA)

HSP 1 Score: 259 bits (662), Expect = 8.950e-83
Identity = 125/193 (64.77%), Postives = 158/193 (81.87%), Query Frame = 1
Query:   16 TVVDGRGHLLGRLASVVAKELLCGQKVVIVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPFHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDTKKRMVVPNALQVIRMTPGRRFCVLGRLSEEVGWPHSDLIKRLEAQRKIKSEAYYVEKKSAKQIKDKAEAEADFSAVAPVLEEFGF 594
            T++D RGHLLGRLAS++AKELLCGQKV +VRCE+I ++GSL+RNKVK+  Y++KRH TNPK+GP H+RSPAR+ WR VRGMLP KTARG+ ALARL+ FEGIPAPYD KKR+VVP AL+V+R+ PGR+F VL  L+ EVGW H DLI+RLE +RK++++A+Y +KK+A   K  A A  D SAV PVLE  G+
Sbjct:    7 TLIDARGHLLGRLASIIAKELLCGQKVTVVRCEEICVTGSLLRNKVKWANYRRKRHLTNPKKGPIHYRSPARMLWRVVRGMLPHKTARGQAALARLATFEGIPAPYDKKKRVVVPEALKVLRLQPGRKFTVLKTLANEVGWKHKDLIERLENKRKLEAQAFYEKKKAAAAQKRAATAAVDLSAVTPVLEANGY 199          
BLAST of mRNA_H-paniculata_contig2969.8067.1 vs. uniprot
Match: F0Y3B4_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3B4_AURAN)

HSP 1 Score: 258 bits (660), Expect = 1.800e-82
Identity = 127/197 (64.47%), Postives = 153/197 (77.66%), Query Frame = 1
Query:    1 MFDAPTVVDGRGHLLGRLASVVAKELLCGQKVVIVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPFHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDTKKRMVVPNALQVIRMTPGRRFCVLGRLSEEVGWPHSDLIKRLEAQRKIKSEAYYVEKKSAKQIKDKAEAEADFSAVAPVLEEFG 591
            +F    +VDGR H+LGRLAS++AKELLCGQKVV+VRCEQ+ +SGSLVRNKVK+  + KKR NTNPKRGP H+RSPAR+ WRTVRGMLP KT RG++ALARL CFEG+P PYD  K+MVVP AL+V+R+ PGRRF VL RL+ E GW H  LI ++E +R  +S  +Y  KKSA  +K KA A AD S VA VLE FG
Sbjct:    2 VFQDSVLVDGRTHMLGRLASIIAKELLCGQKVVVVRCEQLCVSGSLVRNKVKFTAFLKKRTNTNPKRGPIHYRSPARMLWRTVRGMLPHKTHRGQQALARLQCFEGVPPPYDKMKKMVVPEALKVLRLKPGRRFTVLARLASEFGWKHEALIAKMEEKRVARSAEFYAAKKSATALKAKATAAADLSKVADVLEAFG 198          
BLAST of mRNA_H-paniculata_contig2969.8067.1 vs. uniprot
Match: A0A7S0LS12_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LS12_9EUKA)

HSP 1 Score: 256 bits (655), Expect = 8.640e-82
Identity = 125/182 (68.68%), Postives = 150/182 (82.42%), Query Frame = 1
Query:   19 VVDGRGHLLGRLASVVAKELLCGQKVVIVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPFHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDTKKRMVVPNALQVIRMTPGRRFCVLGRLSEEVGWPHSDLIKRLEAQRKIKSEAYYVEKKSAKQIKDKAEAEADFSA 564
            V+DG+GHLLGRL S++AK+LL G+KVV+VRCE + ISGSL RNKVKY Q+ KKR NTNP RGPFHFRSPARIFWRT+RGMLP KT RG+ ALARL+CFEGIP PYD KKR+VVP+AL+ +R+   R F VLG LS+EVGW ++DL+ +LEAQRKIK +AYY EKK+   +K KA A AD SA
Sbjct:   13 VIDGKGHLLGRLCSIIAKQLLFGKKVVVVRCEALIISGSLTRNKVKYAQFMKKRMNTNPNRGPFHFRSPARIFWRTLRGMLPHKTVRGQSALARLACFEGIPEPYDKKKRVVVPSALKSLRLRADRNFTVLGELSKEVGWGYTDLVAKLEAQRKIKEQAYYAEKKAQVALKSKAAASADLSA 194          
BLAST of mRNA_H-paniculata_contig2969.8067.1 vs. uniprot
Match: A0A6V1NQ00_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NQ00_HETAK)

HSP 1 Score: 255 bits (651), Expect = 3.980e-81
Identity = 129/197 (65.48%), Postives = 157/197 (79.70%), Query Frame = 1
Query:    1 MFDAPTVVDGRGHLLGRLASVVAKELLCGQKVVIVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPFHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDTKKRMVVPNALQVIRMTPGRRFCVLGRLSEEVGWPHSDLIKRLEAQRKIKSEAYYVEKKSAKQIKDKAEAEADFSAVAPVLEEFG 591
            MF+   VVDGRGHLLGRLAS+VAK+LLCGQKVV+VR E+I +SGSL+R K ++ Q+ KKR NTNPKRGP HFRSPA+IFWRTVRGM+P KT RG  A+ARL CFEGIP P+D KKRMVVP AL+V+R+   R+   LG L+ EVGW  + LI+RLEA+RKI+S+AYY++KK+A  +K KA AEAD S VA VL   G
Sbjct:    1 MFEDTVVVDGRGHLLGRLASIVAKQLLCGQKVVLVRAEEIVMSGSLIRKKTQFAQWLKKRTNTNPKRGPIHFRSPAKIFWRTVRGMIPHKTVRGTAAMARLQCFEGIPHPWDKKKRMVVPEALKVLRLKAHRKNTKLGTLAGEVGWEKAGLIERLEAKRKIRSQAYYLKKKAAVVLKTKAAAEADLSPVAAVLAPLG 197          
BLAST of mRNA_H-paniculata_contig2969.8067.1 vs. uniprot
Match: A0A7S3H512_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H512_9STRA)

HSP 1 Score: 251 bits (640), Expect = 1.770e-79
Identity = 125/192 (65.10%), Postives = 153/192 (79.69%), Query Frame = 1
Query:   19 VVDGRGHLLGRLASVVAKELLCGQKVVIVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPFHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDTKKRMVVPNALQVIRMTPGRRFCVLGRLSEEVGWPHSDLIKRLEAQRKIKSEAYYVEKKSAKQIKDKAEAEADFSAVAPVLEEFGF 594
            V+DG+GHLLGRLASVVAK+LL G+KVV+VR E + ISGSL RNK+KY Q+ KKR NTNP+RGPFHFRSPARIFWRT+RGMLP KT +G+ AL RL+ FEGIP PYD KKR+VVP+AL+ +R+   R F VLG LS+EVGW ++DL+ +LEAQRKIK +AYY EKK+   +K KA A AD S V  +L   G+
Sbjct:    6 VIDGKGHLLGRLASVVAKQLLFGKKVVVVRTEALLISGSLTRNKIKYAQFIKKRMNTNPRRGPFHFRSPARIFWRTLRGMLPHKTVKGQLALGRLAAFEGIPEPYDKKKRVVVPSALKSLRLRADRNFTVLGELSKEVGWGYTDLVAKLEAQRKIKEQAYYAEKKAQIALKSKATASADLSPVNAILAPLGY 197          
BLAST of mRNA_H-paniculata_contig2969.8067.1 vs. uniprot
Match: A0A7S1TDT8_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TDT8_9RHOD)

HSP 1 Score: 250 bits (638), Expect = 3.660e-79
Identity = 121/198 (61.11%), Postives = 155/198 (78.28%), Query Frame = 1
Query:    1 MFDAPTVVDGRGHLLGRLASVVAKELLCGQKVVIVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPFHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDTKKRMVVPNALQVIRMTPGRRFCVLGRLSEEVGWPHSDLIKRLEAQRKIKSEAYYVEKKSAKQIKDKAEAEADFSAVAPVLEEFGF 594
            MF  P VVDGRGHLLGRLAS VAKELL GQ+VV+VRCE I  SG  +RNK KY+ + +KR NTNP RGP HFRSP+++FWRTVRGMLP KT RG +ALARL  FEGIPAPYD  KRMVVPNAL+V+R+ P R++C LGR++ EVGW ++D++ RLEA+RK+ SEAYY +KK+  +++ +A+A A    +   L+ +G+
Sbjct:    1 MFSGPVVVDGRGHLLGRLASTVAKELLNGQQVVVVRCEDIDQSGKFIRNKNKYLIFLRKRMNTNPTRGPIHFRSPSKMFWRTVRGMLPHKTQRGADALARLKVFEGIPAPYDKTKRMVVPNALRVLRLRPDRKYCRLGRIASEVGWKYADVVDRLEAKRKVSSEAYYEKKKAEGKLRVQAKANAAIQEMETKLQNYGY 198          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2969.8067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6W9_ECTSI4.050e-12390.9160S ribosomal protein L13a n=2 Tax=Ectocarpus TaxI... [more]
A0A835Z9N1_9STRA2.290e-9370.5660S ribosomal protein L13a n=1 Tax=Tribonema minus... [more]
W7TSL6_9STRA3.120e-8466.5060s ribosomal protein l13a n=1 Tax=Nannochloropsis... [more]
A0A5J4Z3W8_PORPP8.660e-8363.9660S ribosomal protein L13a n=1 Tax=Porphyridium pu... [more]
A0A7S1TQI9_9STRA8.950e-8364.77Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
F0Y3B4_AURAN1.800e-8264.47Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S0LS12_9EUKA8.640e-8268.68Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A6V1NQ00_HETAK3.980e-8165.48Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3H512_9STRA1.770e-7965.10Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S1TDT8_9RHOD3.660e-7961.11Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2969contigH-paniculata_contig2969:669..4411 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score362.8
Seed ortholog evalue9.9e-98
Seed eggNOG ortholog2880.D7G6W9
Preferred nameRPL13A
KEGG rclassRC01978
KEGG koko:K02872,ko:K03644
KEGG ReactionR07767,R07768
KEGG Pathwayko00785,ko01100,ko03010,map00785,map01100,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000956,GO:0002181,GO:0002237,GO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006928,GO:0006935,GO:0006950,GO:0006952,GO:0006955,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0007275,GO:0007423,GO:0008104,GO:0008150,GO:0008152,GO:0008407,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009653,GO:0009719,GO:0009887,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010212,GO:0010224,GO:0010243,GO:0010332,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0014070,GO:0014074,GO:0015031,GO:0015833,GO:0015934,GO:0016070,GO:0016071,GO:0016477,GO:0017148,GO:0019222,GO:0019439,GO:0019538,GO:0022416,GO:0022625,GO:0022626,GO:0023052,GO:0030323,GO:0030324,GO:0030595,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031333,GO:0032268,GO:0032269,GO:0032496,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0033993,GO:0034097,GO:0034248,GO:0034249,GO:0034341,GO:0034613,GO:0034641,GO:0034644,GO:0034645,GO:0034655,GO:0035295,GO:0040011,GO:0042221,GO:0042330,GO:0042592,GO:0042886,GO:0043043,GO:0043170,GO:0043207,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043603,GO:0043604,GO:0044087,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045087,GO:0045184,GO:0045947,GO:0046483,GO:0046683,GO:0046700,GO:0046907,GO:0048246,GO:0048513,GO:0048519,GO:0048523,GO:0048731,GO:0048856,GO:0048870,GO:0050789,GO:0050794,GO:0050896,GO:0050900,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051591,GO:0051641,GO:0051649,GO:0051674,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0060326,GO:0060425,GO:0060541,GO:0065007,GO:0065008,GO:0070727,GO:0070887,GO:0070972,GO:0071214,GO:0071310,GO:0071320,GO:0071345,GO:0071346,GO:0071407,GO:0071417,GO:0071478,GO:0071479,GO:0071480,GO:0071482,GO:0071493,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0097159,GO:0097452,GO:0097529,GO:0104004,GO:1901193,GO:1901194,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1904688,GO:1904689,GO:1905517,GO:1990904,GO:2000112,GO:2000113,GO:2000765,GO:2000766
EggNOG free text desc.Belongs to the universal ribosomal protein uL13 family
EggNOG OGsCOG0102@1,KOG3204@2759
Ec32 ortholog descriptionRibosomal protein L13, eukaryotic/archaeal
Ec32 orthologEc-01_011950.1
EC2.8.1.8
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011
Exons5
Model size1100
Cds size597
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2969.8067.1prot_H-paniculata_contig2969.8067.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2969 1172..4411 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929905.7128713-UTR-H-paniculata_contig2969:668..11711622929905.7128713-UTR-H-paniculata_contig2969:668..1171Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2969 669..1171 -
1691481063.50655-UTR-H-paniculata_contig2969:668..11711691481063.50655-UTR-H-paniculata_contig2969:668..1171Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2969 669..1171 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929905.7301817-CDS-H-paniculata_contig2969:1171..13001622929905.7301817-CDS-H-paniculata_contig2969:1171..1300Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2969 1172..1300 -
1691481063.5207815-CDS-H-paniculata_contig2969:1171..13001691481063.5207815-CDS-H-paniculata_contig2969:1171..1300Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2969 1172..1300 -
1622929905.7521458-CDS-H-paniculata_contig2969:1758..19201622929905.7521458-CDS-H-paniculata_contig2969:1758..1920Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2969 1759..1920 -
1691481063.530034-CDS-H-paniculata_contig2969:1758..19201691481063.530034-CDS-H-paniculata_contig2969:1758..1920Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2969 1759..1920 -
1622929905.7754424-CDS-H-paniculata_contig2969:2328..23881622929905.7754424-CDS-H-paniculata_contig2969:2328..2388Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2969 2329..2388 -
1691481063.539269-CDS-H-paniculata_contig2969:2328..23881691481063.539269-CDS-H-paniculata_contig2969:2328..2388Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2969 2329..2388 -
1622929905.8045685-CDS-H-paniculata_contig2969:3243..33531622929905.8045685-CDS-H-paniculata_contig2969:3243..3353Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2969 3244..3353 -
1691481063.548345-CDS-H-paniculata_contig2969:3243..33531691481063.548345-CDS-H-paniculata_contig2969:3243..3353Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2969 3244..3353 -
1622929905.8224363-CDS-H-paniculata_contig2969:4275..44111622929905.8224363-CDS-H-paniculata_contig2969:4275..4411Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2969 4276..4411 -
1691481063.5572913-CDS-H-paniculata_contig2969:4275..44111691481063.5572913-CDS-H-paniculata_contig2969:4275..4411Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2969 4276..4411 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2969.8067.1

>prot_H-paniculata_contig2969.8067.1 ID=prot_H-paniculata_contig2969.8067.1|Name=mRNA_H-paniculata_contig2969.8067.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=199bp
MFDAPTVVDGRGHLLGRLASVVAKELLCGQKVVIVRCEQITISGSLVRNK
VKYMQYKKKRHNTNPKRGPFHFRSPARIFWRTVRGMLPRKTARGEEALAR
LSCFEGIPAPYDTKKRMVVPNALQVIRMTPGRRFCVLGRLSEEVGWPHSD
LIKRLEAQRKIKSEAYYVEKKSAKQIKDKAEAEADFSAVAPVLEEFGF*
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mRNA from alignment at H-paniculata_contig2969:669..4411-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2969.8067.1 ID=mRNA_H-paniculata_contig2969.8067.1|Name=mRNA_H-paniculata_contig2969.8067.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3743bp|location=Sequence derived from alignment at H-paniculata_contig2969:669..4411- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCGACGCACCAACAGTGGTGGATGGCCGCGGCCACTTGCTTGGACG CCTTGCGTCCGTTGTGGCGAAGGAGCTGCTTTGCGGCCAGAAGGTAGTGA TCGTGCGCTGCGAGCAAATCACCATCAGCGGATCCCGTGAGTGTAACAGC TAACGAGCCTAAGCCTACTGTATGCTTGACAGTCATCGACACTACTGTAT GCTTGACAGTCACTCTACGGTAGTCCTTGTAGAATGCGTTAGGGGCTTAT TACGTGCACCAGACGTACTGCGTAGGTTCCTCCCACAGAGTTATGCAGGG TATGGCATGTTACTGTGTCTTTAGCTTTTGTGACTCGCCGTTGTAGGGCC ATTTTTCTGTCTACAAAGCCCTCTTGAGGAGGAAGCTCGCGAAGGGTATT AGTACATGGTTATGGCCACAGGCACCGAGCTTGGCGTCTGATATCATAAT CGGACCTTTCCATCTAAAACAGTGAGTATATTGTTAGACGAAGCACGGCA GCATGTACAATCGTCCTGTATTGGGCACGCTTCGTATGGAAGGGGAGGGC TCCACCGTCACTTCGTCGGTACTATTTTACGCTTGTACGCCTTCACTAGC CCACAAAGTCAGAACGATGTCTCGATCAAGGAGCAGCACGTCCGTATATT GTCAAGAGTGCCCTTGGACTTGGAGAAAAGTGATTTCCATTGGGAACTAG GGTCAGCAAAAAATATCCTTGGCTTGAAGGGTGGGTAATTGAGGTAAGTA TGCCTCTATGCTGCTGTAAGATTTGTACTTGTCATCATGCAATATACAGT GAGGGTACGATTATCAGTTGTACTGTTTCCATACTTGACACATGGCGGTA CAAAGAGATCCACCTCGTCACTTGTGAAAAACTTGAGTCGACCTATAAAC GACACACTATTACCTGTTCCACTTAGCACCTTGAAAAGTGGAAAGCTGCA AATATTCTCGACACTGACGTCAATAATGTTATCCTCGTAAGCCTGTGCAA CGTTGACAAGCTGATGCTCTCGTCTGTTTCACCCGTTGATGTCGCGTCTT GTCGCCAGTGGTTCGCAACAAGGTGAAGTACATGCAGTACAAGAAGAAGC GTCACAACACCAATCCCAAGCGCGGTCCCTTCCACTTTCGCTCCCCCGCG CGCATCTTCTGGCGGACGGTGCGTGGACTGTTGTCGATGTATGGTTTGAC TGCATCTCTAAGCAAGTATTCGGGTACTGATATTGATCCATCATACGGGT CGTGTGCGTATCAACTTGTCGGTGATATCATACTTGCCATGGGGACAAAC ACCAGTGTAACTACCAAAAGGCAAGGTACAGATTGGGGTTACGCGTATCC TCGGTGGATGTTCATCCTTGAACCCAGTCGTGCAGTCTAAACTTGACCGA ACCGCGTCAAACAAGATTGGAGCCTATGCCATTAATTGAGAAGGCCTAGT GCAGTTCAGATGAAGCGAGGACATGGTTTTGAGGGTGATACTTGAAATAT TGAAGTGCGATGTTTTGTGGAAATTGTCTTGATCCAATTAAATTTTCCTG GTGTAGCCTTTCTAAGGACTAGGGAAAGGATTAGTGATGTGGTGTAGTTA CTCACAAGAGGTGAGCGATCTCACTATGATCGTATAACTTGCTGTCTGTG ATCAACTCTCGACTTTCTCTGTACATTTGAAGCTGACCCGGGCAGACGTG CAACGGCTGTAGACACGACTTTCGATGATCCCATTCGAGCGCTCTCATAT ATCACTCTGTTTGGAAGCGCCCACGCGATGAATGAGAAGATGTGTAAATT ATTATGTTCCGTATAAAGAAGTGTAGACGTTCTTCGGTATGGAAGCATCG GATAGAGGTTTTTGCAATTGACCGTTCGAGGGTTGATAAAAATGGGATGT GTGTGGTCACTTCTCCTTCGTGCGAAGGAAATACAATGACACCATAGCGT GAACCGCATATAAACTTGATCCTCATACGTTATGGGGGTTGCATTCTTAC GCGCGTGGTTATTTTTTTGACAGGTGCGCGGTATGCTTCCGAGGAAGACC GCGAGGGGTGAGGAGGCGCTTGCCCGCCTTTCGGTAAGTCGTGTTGTATA CCTCCGTGAGAGGTTGGTGCGGTGTTGAAGTAATCGAGGGCAGATGTTGG CAGTACAGCGATTCGAGATTTACTTGGGTGAAAAGTGGCGCAAACTATCG TTTTACACCTCTGATGAAGGTCTTTTCGCGGTTCAGTGCTATGTTGGTAC TGAACGTAATGTATTCTACTTACACCGCGTTTACTCACCTTACGAGATGA TTACTAGGATTTCACCCTCGAGTGAGGGTGCTTACTTATAATCCACTTGC ATTTCCCCATGCCCCACAGAGAAAGGGCATATTTATGCTCCACAGCACAT GATGGATGTGGTGACGGACTCATCTTCGGTAATGGGTTTTGTGACTCAAT GGTGCTCCCCTTTTTATCGTCTGCGCCTGAATCGATTGCAGTGCTTCGAG GGTATACCCGCCCCTTACGACACGAAGAAGCGAATGGTGGTGCCAAATGC CCTGCAGGTGATCAGGATGACGCCTGGTCGCCGCTTCTGTGTCCTCGGTC GTCTTTCTGAGGAAGTGGGATGGCCACACTCTGACCTCATCAAACGCTTG GAGGTAAGAACGTGACGTCCGCTAATCGGGTATCAGTCAAGGGGAAGTCC TTCGCTTTTTAACGCAACAATGACAAATGATGGATTAATGTACCTTCGTC TCCTTTGTTTTTAAAATTACAACGGGTATCGACTTGAAAATGTTACACTA CAAGAGTATCGAGCGCAAGGTTGAGGCTACGACTAGGTGAAACACTGGAG AAGTGTGTAGTTGGCTAAAAAAAGATGAGCACGAATTAATGATCAAATCC ACGTTGATGAAAACATCCTATGTGGAGTTGAGGATGGTACCTTATCACGG CAGCTAATTGAGAGTAACGTCTTGGACTCCGCTGCACACGGTCATCTAGT AGGACTGCGCAAGCTCATGTAACCCTTTCAAAACACTCGCGGTAATGAAT CAAGCCAATGTCGTGAAAGCCCTAACGACACTCTCGATGTGATCAATAAT TTGATGCACAGGCCCAACGCAAGATCAAGTCTGAGGCGTACTATGTCGAA AAGAAGAGTGCGAAGCAGATCAAGGACAAGGCGGAGGCGGAGGCAGACTT TTCGGCAGTAGCGCCAGTGCTTGAAGAGTTTGGATTTTAATATCTAAATC TTGATTTTCGTTTGAATGATCGAAACGTCGTGTTGCTGTTTGCCGGCGAT CACAGGTCGGGGAGCGTAGCATGATTGTTTGGTTCGCTTCACTCTAGTTT GGGTGCAACGAGTGGTGGCTTGGGATTAGCCGCGTTTGGTCGTTCGTCTC GCATTGGGAACAACGACCCTGTACGCTGCCGCGTGGAAAAAAAACTCTAA ACATACTTGGTCTCCGGGAAGTCTTTTTGCGTCATGTGCGTCTAGTTTGA CTGGCATGGATCTATCTGTCCATGGTCGCAGGCTTCTTCGACGACATGTG GAAATCTCCACCGTGCTTGTTTTATCGTAACGGTAGCGACGTAGAAGTTA CTAACAAGAAGTCGGGTGGTGGTATGCCACTGCCAAGTAGTGTGGATGTC CTCAATACCTCATTTCACCACCCGTAACGGGGAACGTGTCCCCGCATGTT CATCTTTGATACTTGTTATAATACTGGACAGTAACTGAAAATA
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Coding sequence (CDS) from alignment at H-paniculata_contig2969:669..4411-

>mRNA_H-paniculata_contig2969.8067.1 ID=mRNA_H-paniculata_contig2969.8067.1|Name=mRNA_H-paniculata_contig2969.8067.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1194bp|location=Sequence derived from alignment at H-paniculata_contig2969:669..4411- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCGACGCACCAACAGTGGTGGATGGCCGCGGCCACTTGCTTGGACG
CCTTGCGTCCGTTGTGGCGAAGGAGCTGCTTTGCGGCCAGAAGGTAGTGA
TCGTGCGCTGCGAGCAAATCACCATCAGCGGATCCCATGTTCGACGCACC
AACAGTGGTGGATGGCCGCGGCCACTTGCTTGGACGCCTTGCGTCCGTTG
TGGCGAAGGAGCTGCTTTGCGGCCAGAAGGTAGTGATCGTGCGCTGCGAG
CAAATCACCATCAGCGGATCCCTGGTTCGCAACAAGGTGAAGTACATGCA
GTACAAGAAGAAGCGTCACAACACCAATCCCAAGCGCGGTCCCTTCCACT
TTCGCTCCCCCGCGCGCATCTTCTGGCGGACGTGGTTCGCAACAAGGTGA
AGTACATGCAGTACAAGAAGAAGCGTCACAACACCAATCCCAAGCGCGGT
CCCTTCCACTTTCGCTCCCCCGCGCGCATCTTCTGGCGGACGGTGCGCGG
TATGCTTCCGAGGAAGACCGCGAGGGGTGAGGAGGCGCTTGCCCGCCTTT
CGGTGCGCGGTATGCTTCCGAGGAAGACCGCGAGGGGTGAGGAGGCGCTT
GCCCGCCTTTCGTGCTTCGAGGGTATACCCGCCCCTTACGACACGAAGAA
GCGAATGGTGGTGCCAAATGCCCTGCAGGTGATCAGGATGACGCCTGGTC
GCCGCTTCTGTGTCCTCGGTCGTCTTTCTGAGGAAGTGGGATGGCCACAC
TCTGACCTCATCAAACGCTTGGAGTGCTTCGAGGGTATACCCGCCCCTTA
CGACACGAAGAAGCGAATGGTGGTGCCAAATGCCCTGCAGGTGATCAGGA
TGACGCCTGGTCGCCGCTTCTGTGTCCTCGGTCGTCTTTCTGAGGAAGTG
GGATGGCCACACTCTGACCTCATCAAACGCTTGGAGGCCCAACGCAAGAT
CAAGTCTGAGGCGTACTATGTCGAAAAGAAGAGTGCGAAGCAGATCAAGG
ACAAGGCGGAGGCGGAGGCAGACTTTTCGGCAGTAGCGCCAGTGCTTGAA
GAGTTTGGATTTTAAGCCCAACGCAAGATCAAGTCTGAGGCGTACTATGT
CGAAAAGAAGAGTGCGAAGCAGATCAAGGACAAGGCGGAGGCGGAGGCAG
ACTTTTCGGCAGTAGCGCCAGTGCTTGAAGAGTTTGGATTTTAA
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