mRNA_H-paniculata_contig2969.8067.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2969.8067.1 vs. uniprot
Match: D7G6W9_ECTSI (60S ribosomal protein L13a n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6W9_ECTSI) HSP 1 Score: 362 bits (928), Expect = 4.050e-123 Identity = 180/198 (90.91%), Postives = 191/198 (96.46%), Query Frame = 1
Query: 1 MFDAPTVVDGRGHLLGRLASVVAKELLCGQKVVIVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPFHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDTKKRMVVPNALQVIRMTPGRRFCVLGRLSEEVGWPHSDLIKRLEAQRKIKSEAYYVEKKSAKQIKDKAEAEADFSAVAPVLEEFGF 594
MF+AP VDGRGHLLGRLASVVAKELL GQKVV+VRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGP+HFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYD KKRMVVPNALQVIRM PGRRFCVLGRLSEEVGWPH++LIKRLEAQRKIKSEAYYV+KK+AKQ+KDKA AEA+ +AVAPVLEE+GF
Sbjct: 1 MFEAPVTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDKKKRMVVPNALQVIRMAPGRRFCVLGRLSEEVGWPHAELIKRLEAQRKIKSEAYYVDKKAAKQLKDKATAEANLAAVAPVLEEYGF 198
BLAST of mRNA_H-paniculata_contig2969.8067.1 vs. uniprot
Match: A0A835Z9N1_9STRA (60S ribosomal protein L13a n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9N1_9STRA) HSP 1 Score: 286 bits (732), Expect = 2.290e-93 Identity = 139/197 (70.56%), Postives = 168/197 (85.28%), Query Frame = 1
Query: 1 MFDAPTVVDGRGHLLGRLASVVAKELLCGQKVVIVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPFHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDTKKRMVVPNALQVIRMTPGRRFCVLGRLSEEVGWPHSDLIKRLEAQRKIKSEAYYVEKKSAKQIKDKAEAEADFSAVAPVLEEFG 591
+ + P VVDGRGHLLGRLAS+VAK+LL GQKV++VR EQI ISGSLVRNKVKY Q++KKR NTNP RGPFHFRSPARIFWRT+RGM+P KT RG+ A+ARL FEGIPAP+D +KRMVVP AL+V+R+ PGR+ CVLGRLS EVGW H DL++RLEA+RK++SEA+Y +KK+ Q++ KAEA AD SAV PVLE +G
Sbjct: 2 VLEKPVVVDGRGHLLGRLASIVAKQLLSGQKVIVVRAEQIVISGSLVRNKVKYAQFRKKRMNTNPARGPFHFRSPARIFWRTIRGMIPHKTHRGQLAMARLKAFEGIPAPFDKQKRMVVPAALKVLRLAPGRKHCVLGRLSTEVGWRHGDLVERLEAKRKVRSEAFYQKKKANAQLRVKAEAAADLSAVTPVLESYG 198
BLAST of mRNA_H-paniculata_contig2969.8067.1 vs. uniprot
Match: W7TSL6_9STRA (60s ribosomal protein l13a n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSL6_9STRA) HSP 1 Score: 263 bits (673), Expect = 3.120e-84 Identity = 133/200 (66.50%), Postives = 162/200 (81.00%), Query Frame = 1
Query: 4 FDAPTVV-DGRGHLLGRLASVVAKELLCGQKVVIVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPFHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDTKKRMVVPNALQVIRMTPGRRFCVLGRLSEEVGWPHSDLIKRLEAQRKIKSEAYYVEKKSAKQIKDKAEAEA--DFSAVAPVLEEFGF 594
FD+ VV DGRGHLLGRL+S+VAKELL GQKVV+VRCE++ ISG LVRN +YMQ+ +KR NTNPKRGPFH+R+P+RI WRT+RGMLP KT RG +ALARL+ FEGIPAPYDTKKR+VVP AL+++R+ PGRRFC L RL+ EVGW H DL+ RLEA+RKIK+EAYY +KK+ K AE +A + SAV VL FG+
Sbjct: 3 FDSKEVVIDGRGHLLGRLSSIVAKELLSGQKVVVVRCEELMISGGLVRNHTRYMQFLRKRTNTNPKRGPFHYRAPSRILWRTIRGMLPHKTFRGAQALARLTTFEGIPAPYDTKKRVVVPQALKILRLKPGRRFCTLSRLAHEVGWGHRDLVARLEAKRKIKAEAYYQQKKAGTAAKALAERKAASELSAVNNVLAGFGY 202
BLAST of mRNA_H-paniculata_contig2969.8067.1 vs. uniprot
Match: A0A5J4Z3W8_PORPP (60S ribosomal protein L13a n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z3W8_PORPP) HSP 1 Score: 259 bits (662), Expect = 8.660e-83 Identity = 126/197 (63.96%), Postives = 152/197 (77.16%), Query Frame = 1
Query: 1 MFDAPTVVDGRGHLLGRLASVVAKELLCGQKVVIVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPFHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDTKKRMVVPNALQVIRMTPGRRFCVLGRLSEEVGWPHSDLIKRLEAQRKIKSEAYYVEKKSAKQIKDKAEAEADFSAVAPVLEEFG 591
M+++ VVD R HLLGRLAS+VAKELLCGQKVV+ RCE I +SG +R K KY+ + +KR NTNP RGPFHFR+P+RIFWRTVRGMLP KT RG+EAL RL FEGIP PYD KRMVVP+AL+V+R+ P R+ CVLGRLS EVGW + D++ RLE +RK+ S AYY KK+ ++K KA AD S V PVLE FG
Sbjct: 1 MYESVVVVDARAHLLGRLASIVAKELLCGQKVVVTRCEAIEMSGRFIRKKNKYLMFLRKRMNTNPSRGPFHFRAPSRIFWRTVRGMLPHKTERGQEALGRLKVFEGIPPPYDKMKRMVVPDALRVVRLAPRRKHCVLGRLSHEVGWKYQDVLARLETKRKVHSAAYYQRKKALDKLKRKATESADLSKVTPVLEAFG 197
BLAST of mRNA_H-paniculata_contig2969.8067.1 vs. uniprot
Match: A0A7S1TQI9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQI9_9STRA) HSP 1 Score: 259 bits (662), Expect = 8.950e-83 Identity = 125/193 (64.77%), Postives = 158/193 (81.87%), Query Frame = 1
Query: 16 TVVDGRGHLLGRLASVVAKELLCGQKVVIVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPFHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDTKKRMVVPNALQVIRMTPGRRFCVLGRLSEEVGWPHSDLIKRLEAQRKIKSEAYYVEKKSAKQIKDKAEAEADFSAVAPVLEEFGF 594
T++D RGHLLGRLAS++AKELLCGQKV +VRCE+I ++GSL+RNKVK+ Y++KRH TNPK+GP H+RSPAR+ WR VRGMLP KTARG+ ALARL+ FEGIPAPYD KKR+VVP AL+V+R+ PGR+F VL L+ EVGW H DLI+RLE +RK++++A+Y +KK+A K A A D SAV PVLE G+
Sbjct: 7 TLIDARGHLLGRLASIIAKELLCGQKVTVVRCEEICVTGSLLRNKVKWANYRRKRHLTNPKKGPIHYRSPARMLWRVVRGMLPHKTARGQAALARLATFEGIPAPYDKKKRVVVPEALKVLRLQPGRKFTVLKTLANEVGWKHKDLIERLENKRKLEAQAFYEKKKAAAAQKRAATAAVDLSAVTPVLEANGY 199
BLAST of mRNA_H-paniculata_contig2969.8067.1 vs. uniprot
Match: F0Y3B4_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3B4_AURAN) HSP 1 Score: 258 bits (660), Expect = 1.800e-82 Identity = 127/197 (64.47%), Postives = 153/197 (77.66%), Query Frame = 1
Query: 1 MFDAPTVVDGRGHLLGRLASVVAKELLCGQKVVIVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPFHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDTKKRMVVPNALQVIRMTPGRRFCVLGRLSEEVGWPHSDLIKRLEAQRKIKSEAYYVEKKSAKQIKDKAEAEADFSAVAPVLEEFG 591
+F +VDGR H+LGRLAS++AKELLCGQKVV+VRCEQ+ +SGSLVRNKVK+ + KKR NTNPKRGP H+RSPAR+ WRTVRGMLP KT RG++ALARL CFEG+P PYD K+MVVP AL+V+R+ PGRRF VL RL+ E GW H LI ++E +R +S +Y KKSA +K KA A AD S VA VLE FG
Sbjct: 2 VFQDSVLVDGRTHMLGRLASIIAKELLCGQKVVVVRCEQLCVSGSLVRNKVKFTAFLKKRTNTNPKRGPIHYRSPARMLWRTVRGMLPHKTHRGQQALARLQCFEGVPPPYDKMKKMVVPEALKVLRLKPGRRFTVLARLASEFGWKHEALIAKMEEKRVARSAEFYAAKKSATALKAKATAAADLSKVADVLEAFG 198
BLAST of mRNA_H-paniculata_contig2969.8067.1 vs. uniprot
Match: A0A7S0LS12_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LS12_9EUKA) HSP 1 Score: 256 bits (655), Expect = 8.640e-82 Identity = 125/182 (68.68%), Postives = 150/182 (82.42%), Query Frame = 1
Query: 19 VVDGRGHLLGRLASVVAKELLCGQKVVIVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPFHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDTKKRMVVPNALQVIRMTPGRRFCVLGRLSEEVGWPHSDLIKRLEAQRKIKSEAYYVEKKSAKQIKDKAEAEADFSA 564
V+DG+GHLLGRL S++AK+LL G+KVV+VRCE + ISGSL RNKVKY Q+ KKR NTNP RGPFHFRSPARIFWRT+RGMLP KT RG+ ALARL+CFEGIP PYD KKR+VVP+AL+ +R+ R F VLG LS+EVGW ++DL+ +LEAQRKIK +AYY EKK+ +K KA A AD SA
Sbjct: 13 VIDGKGHLLGRLCSIIAKQLLFGKKVVVVRCEALIISGSLTRNKVKYAQFMKKRMNTNPNRGPFHFRSPARIFWRTLRGMLPHKTVRGQSALARLACFEGIPEPYDKKKRVVVPSALKSLRLRADRNFTVLGELSKEVGWGYTDLVAKLEAQRKIKEQAYYAEKKAQVALKSKAAASADLSA 194
BLAST of mRNA_H-paniculata_contig2969.8067.1 vs. uniprot
Match: A0A6V1NQ00_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NQ00_HETAK) HSP 1 Score: 255 bits (651), Expect = 3.980e-81 Identity = 129/197 (65.48%), Postives = 157/197 (79.70%), Query Frame = 1
Query: 1 MFDAPTVVDGRGHLLGRLASVVAKELLCGQKVVIVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPFHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDTKKRMVVPNALQVIRMTPGRRFCVLGRLSEEVGWPHSDLIKRLEAQRKIKSEAYYVEKKSAKQIKDKAEAEADFSAVAPVLEEFG 591
MF+ VVDGRGHLLGRLAS+VAK+LLCGQKVV+VR E+I +SGSL+R K ++ Q+ KKR NTNPKRGP HFRSPA+IFWRTVRGM+P KT RG A+ARL CFEGIP P+D KKRMVVP AL+V+R+ R+ LG L+ EVGW + LI+RLEA+RKI+S+AYY++KK+A +K KA AEAD S VA VL G
Sbjct: 1 MFEDTVVVDGRGHLLGRLASIVAKQLLCGQKVVLVRAEEIVMSGSLIRKKTQFAQWLKKRTNTNPKRGPIHFRSPAKIFWRTVRGMIPHKTVRGTAAMARLQCFEGIPHPWDKKKRMVVPEALKVLRLKAHRKNTKLGTLAGEVGWEKAGLIERLEAKRKIRSQAYYLKKKAAVVLKTKAAAEADLSPVAAVLAPLG 197
BLAST of mRNA_H-paniculata_contig2969.8067.1 vs. uniprot
Match: A0A7S3H512_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H512_9STRA) HSP 1 Score: 251 bits (640), Expect = 1.770e-79 Identity = 125/192 (65.10%), Postives = 153/192 (79.69%), Query Frame = 1
Query: 19 VVDGRGHLLGRLASVVAKELLCGQKVVIVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPFHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDTKKRMVVPNALQVIRMTPGRRFCVLGRLSEEVGWPHSDLIKRLEAQRKIKSEAYYVEKKSAKQIKDKAEAEADFSAVAPVLEEFGF 594
V+DG+GHLLGRLASVVAK+LL G+KVV+VR E + ISGSL RNK+KY Q+ KKR NTNP+RGPFHFRSPARIFWRT+RGMLP KT +G+ AL RL+ FEGIP PYD KKR+VVP+AL+ +R+ R F VLG LS+EVGW ++DL+ +LEAQRKIK +AYY EKK+ +K KA A AD S V +L G+
Sbjct: 6 VIDGKGHLLGRLASVVAKQLLFGKKVVVVRTEALLISGSLTRNKIKYAQFIKKRMNTNPRRGPFHFRSPARIFWRTLRGMLPHKTVKGQLALGRLAAFEGIPEPYDKKKRVVVPSALKSLRLRADRNFTVLGELSKEVGWGYTDLVAKLEAQRKIKEQAYYAEKKAQIALKSKATASADLSPVNAILAPLGY 197
BLAST of mRNA_H-paniculata_contig2969.8067.1 vs. uniprot
Match: A0A7S1TDT8_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TDT8_9RHOD) HSP 1 Score: 250 bits (638), Expect = 3.660e-79 Identity = 121/198 (61.11%), Postives = 155/198 (78.28%), Query Frame = 1
Query: 1 MFDAPTVVDGRGHLLGRLASVVAKELLCGQKVVIVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPFHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDTKKRMVVPNALQVIRMTPGRRFCVLGRLSEEVGWPHSDLIKRLEAQRKIKSEAYYVEKKSAKQIKDKAEAEADFSAVAPVLEEFGF 594
MF P VVDGRGHLLGRLAS VAKELL GQ+VV+VRCE I SG +RNK KY+ + +KR NTNP RGP HFRSP+++FWRTVRGMLP KT RG +ALARL FEGIPAPYD KRMVVPNAL+V+R+ P R++C LGR++ EVGW ++D++ RLEA+RK+ SEAYY +KK+ +++ +A+A A + L+ +G+
Sbjct: 1 MFSGPVVVDGRGHLLGRLASTVAKELLNGQQVVVVRCEDIDQSGKFIRNKNKYLIFLRKRMNTNPTRGPIHFRSPSKMFWRTVRGMLPHKTQRGADALARLKVFEGIPAPYDKTKRMVVPNALRVLRLRPDRKYCRLGRIASEVGWKYADVVDRLEAKRKVSSEAYYEKKKAEGKLRVQAKANAAIQEMETKLQNYGY 198 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2969.8067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2969.8067.1 >prot_H-paniculata_contig2969.8067.1 ID=prot_H-paniculata_contig2969.8067.1|Name=mRNA_H-paniculata_contig2969.8067.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=199bp MFDAPTVVDGRGHLLGRLASVVAKELLCGQKVVIVRCEQITISGSLVRNKback to top mRNA from alignment at H-paniculata_contig2969:669..4411- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2969.8067.1 ID=mRNA_H-paniculata_contig2969.8067.1|Name=mRNA_H-paniculata_contig2969.8067.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3743bp|location=Sequence derived from alignment at H-paniculata_contig2969:669..4411- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2969:669..4411- >mRNA_H-paniculata_contig2969.8067.1 ID=mRNA_H-paniculata_contig2969.8067.1|Name=mRNA_H-paniculata_contig2969.8067.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1194bp|location=Sequence derived from alignment at H-paniculata_contig2969:669..4411- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |