mRNA_H-paniculata_contig2966.8058.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2966.8058.1 vs. uniprot
Match: D7FPM4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPM4_ECTSI) HSP 1 Score: 197 bits (500), Expect = 1.250e-47 Identity = 254/890 (28.54%), Postives = 344/890 (38.65%), Query Frame = 2
Query: 695 RKVSSMVDCELKEEFRYNPKLPHY-AIAAALCWRVGAFSRAARHLDEM------LGVEGMRVLGSFQPLWRAYHRR----------LHTTPTYQGWL-WPNLLIAMDIYGRAERWAEVVDAFSALAYGVNPPIKPPG--------------------------------------------GSKKRLGRPKKKG----------SAKDHAVPPPIAPLAPLHPSPLAYAVTACLMFDQVEEAAAALSGIKVSLRSDAAKAGAVCGGGVPRTPSGVRMGVTPGKGVDGGDDDAESLAVQEEIRADRFGADSTEEFVYMGGHP--DAAWVDSTVRAFLKADRPDLAAAVLSPEICEWACVDAVARDEIQQNAGESGEEDRVRRAMEKLQQSLGAFLEQEAGVKRLTNGSVEGAKRCAQALEMAVEAVGASRSFTSSGS--------------------PKAGTTE---PATTPETENGDHADESLSLGCPLEAAAKTKAIEYVGEDEHLGYPLETEVXXXXXXXXXXXXXXXXXXXXGSTTADGNGEA-----RTRTE-LVNAEALRWL--------------SSPEIRGEACGGLSAESAEDTNSPGGVTDELLRSRIASLSAEIILATMRRAW--ASDSFRLKEEIKDVGK----LAALALYEAGINAGKLSAGAQWASTAAGVVDLSGGHFSTSQAVGMGALNIVLRDMLRQYAYEEEVNRHVHDPRTDLIVIVDSTVSRVAVSNARAILWLLRSEFSRFENGALSPPELLGL----------GTAIYDNPEVSQ-------PLLSVGKQIMERPHKSGVVLCLPRLQLQGWLLAEGCAWR-------GDEGESWSPPWVELEAGA-PPLLPVNT*RETDGWRSVGSNV 2920
RK+S +V + F P A+AA WR G + AARHLDEM L E + S W A R+ + T P++ WP L+A+DIYGRA RWA +AF A + P G RL P++ G A + + P P+ HPS +A+A+TA L +VEEAA LS +K S+R+ GG G+ G G GG R G+D + + G P D W++ TVR F +A + D+A VLS +I W + + +G+ G R+ A E SL AFLE + K+ +G V G+K C LE+ A GA R + G P A P + + + + S AA A E G D G +T G DG+G + R R + LV EA+RWL ++PE G G + A +LRS S S E +L TM + W A + E+ D K A+LALYEAG+ + L A A WAS +AGV++L + + + ALN+VL DM R+YAYEE V RHVH P+ DL++I S A+ N + ILWLL S RF+ ELLG A + + +Q LL ++ M P + G+V+ L R LQGWLL EG AW G W P WVE PP+LP DG V V
Sbjct: 258 RKISRLVSNKGSRAFGLQASTPDMLAVAAVAHWREGVVTGAARHLDEMFARIKKLNKEMVASPSSLVQEWLAADRQRIRDAAAAAAVETPPSHPPERQWPWRLVAVDIYGRANRWAAAAEAFDAFIGDMGFPSSRNGRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAHVSARIAKPTRLPLPEEFGXXXXXXXXXXKAGEFSSPLPLQAWLSFHPSAIAHAITAYLKLGRVEEAAEVLSFLKASVRA----------GGATPAAGGLSPGYVGGSEEGGG-------------YGGRAGSDPS-----LSGPPTVDPGWMEGTVRGFTRAGKWDMALEVLSTDIVAWFSAETGG----DRRSGDGGGGARLVAASE----SLEAFLEAKLXAKKPASGQVAGSKAC---LELLKVAAGAQRGVSGDGGAAIXXXXXXXXXXXXXXXDRPAASAVAVLAPGSRGREQGWQREETTPSATAATAAAPSPVARETHGSDRVPGKGCDTP------------EPGGGDARVGKAEGDGSGSSEPVVDRHRQDALVYTEAIRWLLPGGRLAPDRADGGTTPEAAG---GDIPAHLLPAIELFSDGCRSMLRSGCRSASQEAVLQTMCKVWGGAGGTAVAAEDAGDATKERRRSASLALYEAGVESKALPADAHWASQSAGVLNLDCVDYQMHHGMPLAALNLVLSDMRRKYAYEETVERHVHPPQGDLVMITSVKGSWPALDNLKGILWLLGS--CRFDGPLDGDLELLGQPGERRHPPTDNAATRERGDGNQGGRRRQLELLREAQESMRSPGR-GLVVSLSRRTLQGWLLREGRAWSRANVGGGXXXGRLWKPSWVEDGIDVVPPVLPGLLTARDDGTDVVAGGV 1090 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2966.8058.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2966.8058.1 >prot_H-paniculata_contig2966.8058.1 ID=prot_H-paniculata_contig2966.8058.1|Name=mRNA_H-paniculata_contig2966.8058.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=953bp MLRYSRVALRVSNLIPRILEPSDRWRCRGVGGRAMLLVPPDRSISVESLLback to top mRNA from alignment at H-paniculata_contig2966:4764..11695- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2966.8058.1 ID=mRNA_H-paniculata_contig2966.8058.1|Name=mRNA_H-paniculata_contig2966.8058.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6932bp|location=Sequence derived from alignment at H-paniculata_contig2966:4764..11695- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2966:4764..11695- >mRNA_H-paniculata_contig2966.8058.1 ID=mRNA_H-paniculata_contig2966.8058.1|Name=mRNA_H-paniculata_contig2966.8058.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5718bp|location=Sequence derived from alignment at H-paniculata_contig2966:4764..11695- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |