mRNA_H-paniculata_contig29659.8056.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig29659.8056.1
Unique NamemRNA_H-paniculata_contig29659.8056.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig29659.8056.1 vs. uniprot
Match: D7FL55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL55_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 4.530e-13
Identity = 37/47 (78.72%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:    1 MTLAAVFGHFEAAKTELGLASYAVGQTTLEQIFNNFAGSRENPEVRL 141
            M LA VF HFEAAK +LGLASYAVGQTTLEQIFN+FA +++NPEVRL
Sbjct: 2142 MKLADVFEHFEAAKAKLGLASYAVGQTTLEQIFNSFAVTKDNPEVRL 2188
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BLAST of mRNA_H-paniculata_contig29659.8056.1 vs. uniprot
Match: A0A6H5J891_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J891_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 2.550e-12
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:    1 MTLAAVFGHFEAAKTELGLASYAVGQTTLEQIFNNFAGSRENPEVRL 141
            M LA VF HFEAAK +LGLASYAVGQTTLEQIFN+ A +++NPEVRL
Sbjct:  493 MKLADVFEHFEAAKAKLGLASYAVGQTTLEQIFNSLAVTKDNPEVRL 539
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BLAST of mRNA_H-paniculata_contig29659.8056.1 vs. uniprot
Match: A0A225X1M2_9STRA (ABC transporter n=2 Tax=Phytophthora TaxID=4783 RepID=A0A225X1M2_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 7.650e-8
Identity = 31/50 (62.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:    7 LAAVFGHFEAAKTELGLASYAVGQTTLEQIFNNFAGSR-ENPEVRLGAGG 153
            LA VFGH E +K +LG+  YAV QTTLEQIFNNFAG + E   V  G GG
Sbjct: 1675 LATVFGHVEGSKQQLGIREYAVSQTTLEQIFNNFAGQQSEEKGVARGMGG 1724
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BLAST of mRNA_H-paniculata_contig29659.8056.1 vs. uniprot
Match: A0A812QND9_SYMMI (ABCA1 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812QND9_SYMMI)

HSP 1 Score: 58.5 bits (140), Expect = 3.450e-7
Identity = 29/51 (56.86%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    1 MTLAAVFGHFEAAKTELGLASYAVGQTTLEQIFNNFAGSRENPEVRLGAGG 153
            M LA VF +FE  K+ L +  Y+VGQTTLEQIFN FA S++NPE    A G
Sbjct:  945 MALAKVFKYFEDEKSVLNIQDYSVGQTTLEQIFNQFASSQDNPENSAAAKG 995
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BLAST of mRNA_H-paniculata_contig29659.8056.1 vs. uniprot
Match: G4ZWA3_PHYSP (Lipid exporter ABCA1 family n=8 Tax=Phytophthora TaxID=4783 RepID=G4ZWA3_PHYSP)

HSP 1 Score: 56.2 bits (134), Expect = 2.280e-6
Identity = 30/50 (60.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:    7 LAAVFGHFEAAKTELGLASYAVGQTTLEQIFNNFAGSR-ENPEVRLGAGG 153
            LA+VF   EA+K +LG+  YAV QTTLEQIFNNFAG + E   V  G GG
Sbjct: 1901 LASVFRRVEASKQQLGIREYAVSQTTLEQIFNNFAGQQSEEKGVARGIGG 1950
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BLAST of mRNA_H-paniculata_contig29659.8056.1 vs. uniprot
Match: A0A0W8DA46_PHYNI (ABC transporter domain-containing protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DA46_PHYNI)

HSP 1 Score: 53.5 bits (127), Expect = 1.860e-5
Identity = 29/50 (58.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:    7 LAAVFGHFEAAKTELGLASYAVGQTTLEQIFNNFAGSR-ENPEVRLGAGG 153
            LA+VF   E +K +LG+  YAV QTTLEQIFNNFAG + E   V  G GG
Sbjct:  802 LASVFRCVEGSKQQLGIREYAVSQTTLEQIFNNFAGQQSEEKGVARGIGG 851
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BLAST of mRNA_H-paniculata_contig29659.8056.1 vs. uniprot
Match: A0A482SWD2_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SWD2_9ARCH)

HSP 1 Score: 52.0 bits (123), Expect = 1.870e-5
Identity = 24/42 (57.14%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:    7 LAAVFGHFEAAKTELGLASYAVGQTTLEQIFNNFAGSRENPE 132
            LA +F  FEA K  L +  Y+VGQTTLEQIFN FA  + NP+
Sbjct:  124 LADIFAKFEANKAALSIHEYSVGQTTLEQIFNQFAAKQHNPD 165
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BLAST of mRNA_H-paniculata_contig29659.8056.1 vs. uniprot
Match: A0A2P4XMU0_9STRA (ABC Superfamily n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XMU0_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 1.930e-5
Identity = 28/50 (56.00%), Postives = 33/50 (66.00%), Query Frame = 1 
Query:    7 LAAVFGHFEAAKTELGLASYAVGQTTLEQIFNNFAGSR-ENPEVRLGAGG 153
            LA VF   E +K ++G+  YAV QTTLEQIFNNFAG + E   V  G GG
Sbjct: 1303 LATVFRRVEGSKQQIGIREYAVSQTTLEQIFNNFAGQQSEEKGVARGIGG 1352
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BLAST of mRNA_H-paniculata_contig29659.8056.1 vs. uniprot
Match: A0A0W8CBM2_PHYNI (ABC transporter A family member 1 n=12 Tax=Phytophthora TaxID=4783 RepID=A0A0W8CBM2_PHYNI)

HSP 1 Score: 53.5 bits (127), Expect = 1.960e-5
Identity = 29/50 (58.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:    7 LAAVFGHFEAAKTELGLASYAVGQTTLEQIFNNFAGSR-ENPEVRLGAGG 153
            LA+VF   E +K +LG+  YAV QTTLEQIFNNFAG + E   V  G GG
Sbjct: 1834 LASVFRCVEGSKQQLGIREYAVSQTTLEQIFNNFAGQQSEEKGVARGIGG 1883
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BLAST of mRNA_H-paniculata_contig29659.8056.1 vs. uniprot
Match: A0A3R7KIT9_9STRA (Uncharacterized protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KIT9_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 1.990e-5
Identity = 29/50 (58.00%), Postives = 33/50 (66.00%), Query Frame = 1 
Query:    7 LAAVFGHFEAAKTELGLASYAVGQTTLEQIFNNFAGSR-ENPEVRLGAGG 153
            LA VF   E +K +LG+  YAV QTTLEQIFNNFAG + E   V  G GG
Sbjct: 2792 LANVFRRVEGSKKQLGIREYAVSQTTLEQIFNNFAGQQSEEKGVARGIGG 2841
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29659.8056.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7FL55_ECTSI4.530e-1378.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J891_9PHAE2.550e-1276.60ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A225X1M2_9STRA7.650e-862.00ABC transporter n=2 Tax=Phytophthora TaxID=4783 Re... [more]
A0A812QND9_SYMMI3.450e-756.86ABCA1 protein (Fragment) n=1 Tax=Symbiodinium micr... [more]
G4ZWA3_PHYSP2.280e-660.00Lipid exporter ABCA1 family n=8 Tax=Phytophthora T... [more]
A0A0W8DA46_PHYNI1.860e-558.00ABC transporter domain-containing protein n=1 Tax=... [more]
A0A482SWD2_9ARCH1.870e-557.14Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A2P4XMU0_9STRA1.930e-556.00ABC Superfamily n=1 Tax=Phytophthora palmivora var... [more]
A0A0W8CBM2_PHYNI1.960e-558.00ABC transporter A family member 1 n=12 Tax=Phytoph... [more]
A0A3R7KIT9_9STRA1.990e-558.00Uncharacterized protein n=4 Tax=Phytophthora kerno... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig29659contigH-paniculata_contig29659:1553..2974 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue1.1e-11
Seed eggNOG ortholog2880.D7FL55
KEGG koko:K05643,ko:K05645
KEGG TC3.A.1.211
KEGG Pathwayko02010,map02010
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0006810,GO:0006869,GO:0008150,GO:0009653,GO:0010876,GO:0015399,GO:0015405,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0030587,GO:0031090,GO:0031288,GO:0032502,GO:0033036,GO:0042623,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048856,GO:0051179,GO:0051234,GO:0051703,GO:0051704,GO:0055085,GO:0071702,GO:0090702,GO:0098588,GO:0098805,GO:0099120
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1131@1,KOG0059@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons2
Model size437
Cds size159
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig29659.8056.1prot_H-paniculata_contig29659.8056.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig29659 1831..2974 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929904.477511-UTR-H-paniculata_contig29659:1552..18301622929904.477511-UTR-H-paniculata_contig29659:1552..1830Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig29659 1553..1830 -
1691481062.997383-UTR-H-paniculata_contig29659:1552..18301691481062.997383-UTR-H-paniculata_contig29659:1552..1830Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig29659 1553..1830 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929904.4948626-CDS-H-paniculata_contig29659:1830..19411622929904.4948626-CDS-H-paniculata_contig29659:1830..1941Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29659 1831..1941 -
1691481063.0079463-CDS-H-paniculata_contig29659:1830..19411691481063.0079463-CDS-H-paniculata_contig29659:1830..1941Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29659 1831..1941 -
1622929904.514269-CDS-H-paniculata_contig29659:2926..29741622929904.514269-CDS-H-paniculata_contig29659:2926..2974Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29659 2927..2974 -
1691481063.018247-CDS-H-paniculata_contig29659:2926..29741691481063.018247-CDS-H-paniculata_contig29659:2926..2974Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29659 2927..2974 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig29659.8056.1

>prot_H-paniculata_contig29659.8056.1 ID=prot_H-paniculata_contig29659.8056.1|Name=mRNA_H-paniculata_contig29659.8056.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=53bp
MTLAAVFGHFEAAKTELGLASYAVGQTTLEQIFNNFAGSRENPEVRLGAG
GN*
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mRNA from alignment at H-paniculata_contig29659:1553..2974-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig29659.8056.1 ID=mRNA_H-paniculata_contig29659.8056.1|Name=mRNA_H-paniculata_contig29659.8056.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1422bp|location=Sequence derived from alignment at H-paniculata_contig29659:1553..2974- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGCTGGCGGCTGTTTTCGGACACTTCGAGGCGGCCAAGACCGAGGT
TCGTCGATTGATTACCGTCGCGAAATCTACAGTTGGGATGAAATCTTAAT
GTTCTTTGGCGTTATTGTTTTGTTTGCACAGGTTTGTCACCACACAGCAA
ACTTGAACCTCGGCGCAAAACAAGTTGGGGTGTATAGATAGCTACATGTT
TGTGAAAAAAGAACTGAACGAAGACGGAAAAGGGTGAAACAGCGTCTGTC
AAAAGTGGGAAATACACTAATGCCTCACATCTTCGCATTTATATCGCCGA
AAACGTGCCCGATTCACAAGCTGATGTGTTACTTGGAAACTTCCCGATCC
CAATTCCAATTCCGGCGCATTCTATGGAACTAGCGCATTTCGCGTCATGA
CCTCGAGATTTACTGTTCACTACTAAAAAGTGCACCATAAACATCAGCAG
CCCCCCCCTCTTTTTTTATTGAAAAAGTGAATTCCTCCACCAACTCTAGA
AATCAAATTTCATCCAATGCAATCCGGTGCAAAGGAAAGCCGACAACCGT
GAGTGCACAGATATATGTTGACACTGTCTTCGAAAGCGAGAAGTCGCCGT
TTATGTTGTTCAGAGTTATCCCTCGCATGGTTCAGCTTCGATTTTCGTCA
ACTCTTGCACCCCCCGGACAAATACGAATACCTGCAAATGGTTCAACAAA
AAACTGAAAGTATTCGCTCGAGTTTGAGGGTGAGCTCATGTGTTCGATGT
GCCCCAGACCACCCCTGACTGCTAATAATTCTTGTAAATCGAATGGACGA
GGGTGCGTACTTATTCTATGTACCGCTCATTCTGAAACTCGGGCGAATAC
TTTCAGTTTTTTGTGAGAACCATTTGCAATCATTCGTATTTGTCCGGAGG
GTGAACTCTTGCTTGGTGGTTTTGCCGCCCACCAATCACGCACTTTGTTT
TGCTGGAATGCACTACCTGGGTTACTTTGATCAAGCCTTCATTTTTTCCA
CCTGTCCGTCGTATTTGTGTTTGTGTTTGCTAGCTTGGTCTCGCCTCTTA
CGCAGTCGGGCAGACGACGCTGGAGCAGATTTTCAACAACTTCGCCGGTA
GTCGAGAAAACCCCGAGGTTAGGTTGGGAGCCGGCGGCAACTAGGAGCGT
AGGTTGGAAGCAGGGTTGTGCTTTATATCGGCTAGCCAGGCACATGTTCG
GAAGGTGTCGATGGGAAATTTAATGCGCACAGTATTTGGTGCTCGAAGAC
TTGAATCAAGAGTTGCGGTCGGTTTATTAGAAGTTTCTCTGCGTATTCAG
AAGATGATCTACCTGTAGGCCGGTTAGACAGGCAGATCTTCTTAAAATTT
CCTACAGCCTACCTTACGACTTGATCATGTGTTTCAGTTGAAGTATGTGC
CGCGTTTCTGGTCATATCTTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig29659:1553..2974-

>mRNA_H-paniculata_contig29659.8056.1 ID=mRNA_H-paniculata_contig29659.8056.1|Name=mRNA_H-paniculata_contig29659.8056.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at H-paniculata_contig29659:1553..2974- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGCTGGCGGCTGTTTTCGGACACTTCGAGGCGGCCAAGACCGAGAT
GACGCTGGCGGCTGTTTTCGGACACTTCGAGGCGGCCAAGACCGAGCTTG
GTCTCGCCTCTTACGCAGTCGGGCAGACGACGCTGGAGCAGATTTTCAAC
AACTTCGCCGGTAGTCGAGAAAACCCCGAGGTTAGGTTGGGAGCCGGCGG
CAACTAGCTTGGTCTCGCCTCTTACGCAGTCGGGCAGACGACGCTGGAGC
AGATTTTCAACAACTTCGCCGGTAGTCGAGAAAACCCCGAGGTTAGGTTG
GGAGCCGGCGGCAACTAG
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