mRNA_H-paniculata_contig29569.8040.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig29569.8040.1
Unique NamemRNA_H-paniculata_contig29569.8040.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig29569.8040.1 vs. uniprot
Match: D7FSU3_ECTSI (Mitochondrial pyrimidine nucleotide transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSU3_ECTSI)

HSP 1 Score: 246 bits (629), Expect = 3.540e-78
Identity = 111/129 (86.05%), Postives = 123/129 (95.35%), Query Frame = 1 
Query:    1 GFFRGLLPGLVGIVPARSTYFLAYSKSKEFWNNEARLGDRHRDLTEILCGVTAGIVQNTITNPIWMVKTRMQLIADTATGQVAYGGYKQAVGAIWRDEGVRGFYKGMSASYWGCSEGCIYFVLYERLKR 387
            GFFRGL PGL GI+PARSTYF AYS+SK+FW N ARLGDRHRDLTE+LCGVTAG+VQNTITNPIWMVKTRMQL+ADTATGQ+AYGGYK+A+GAI+RDEG RGFYKGMSASYWGCSEGC+YFVLYER+KR
Sbjct:  197 GFFRGLPPGLAGIIPARSTYFFAYSRSKDFWTNNARLGDRHRDLTEVLCGVTAGVVQNTITNPIWMVKTRMQLLADTATGQIAYGGYKEAIGAIYRDEGARGFYKGMSASYWGCSEGCLYFVLYERIKR 325
[Close]
BLAST of mRNA_H-paniculata_contig29569.8040.1 vs. uniprot
Match: A0A836CGB6_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGB6_9STRA)

HSP 1 Score: 165 bits (418), Expect = 9.770e-48
Identity = 85/129 (65.89%), Postives = 98/129 (75.97%), Query Frame = 1 
Query:    1 GFFRGLLPGLVGIVPARSTYFLAYSKSKEFWNNEARLGDRHRDLTEILCGVTAGIVQNTITNPIWMVKTRMQLIADTATGQVAYGGYKQAVGAIWRDEGVRGFYKGMSASYWGCSEGCIYFVLYERLKR 387
            GFFRGL P L+GI P+R+TYF AY  +K       RLGD    LT I  G  AG+V NTITNPIWMVKTRMQL+A+ A GQVAY GY+ AV +I ++EGVRGFYKG+SASYWGCSEGCI FV YE+LKR
Sbjct:   83 GFFRGLSPTLLGIFPSRATYFWAYESTKRVLT--PRLGDG--TLTHIGAGFAAGMVSNTITNPIWMVKTRMQLLANAAKGQVAYTGYRHAVKSILKEEGVRGFYKGLSASYWGCSEGCIQFVAYEKLKR 207
[Close]
BLAST of mRNA_H-paniculata_contig29569.8040.1 vs. uniprot
Match: W7THZ5_9STRA (Solute carrier family member 36 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7THZ5_9STRA)

HSP 1 Score: 166 bits (421), Expect = 1.410e-47
Identity = 83/129 (64.34%), Postives = 101/129 (78.29%), Query Frame = 1 
Query:    1 GFFRGLLPGLVGIVPARSTYFLAYSKSKEFWNNEARLGDRHRDLTEILCGVTAGIVQNTITNPIWMVKTRMQLIADTATGQVAYGGYKQAVGAIWRDEGVRGFYKGMSASYWGCSEGCIYFVLYERLKR 387
            GFFRGL P LVGI+PAR+TYF AYS SK+       LGD    LT IL G+ AG+  NTITNPIWMVKTRMQL+AD A GQ+AY  Y+ A+  I+R+EG++GF+KG+SASYWGCSEGCI FV+YE+LK+
Sbjct:  141 GFFRGLPPTLVGIIPARATYFWAYSTSKQALMPS--LGDN--TLTHILSGIAAGVTGNTITNPIWMVKTRMQLMADGAVGQMAYTSYRNAITRIYREEGLKGFWKGLSASYWGCSEGCIQFVVYEKLKK 265
[Close]
BLAST of mRNA_H-paniculata_contig29569.8040.1 vs. uniprot
Match: A0A835YUQ3_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUQ3_9STRA)

HSP 1 Score: 150 bits (380), Expect = 1.240e-42
Identity = 79/131 (60.31%), Postives = 95/131 (72.52%), Query Frame = 1 
Query:    1 GFFRGLLPGLVGIVPARSTYFLAYSKSKEFWNNEARLGDRHRDLTEILCGVTAGIVQNTITNPIWMVKTRMQLIA--DTATGQVAYGGYKQAVGAIWRDEGVRGFYKGMSASYWGCSEGCIYFVLYERLKR 387
            GFFRGL P L+GI P+R++YF AY   K        LGD    +T I+ G++AG   NTIT+PIWMVKTRMQL+A  D A GQVAY GY+ A+  I+R EG RGFYKG++ASYWGCSEGCI FV YE+LKR
Sbjct:   43 GFFRGLSPTLLGIFPSRASYFWAYETMKS--GLVPVLGDG--TVTHIVAGLSAGATANTITSPIWMVKTRMQLLASIDAAHGQVAYRGYRHAIQTIYRQEGFRGFYKGLTASYWGCSEGCIQFVAYEKLKR 169
[Close]
BLAST of mRNA_H-paniculata_contig29569.8040.1 vs. uniprot
Match: A0A8J9T6G8_PHATR (Hypothetical protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9T6G8_PHATR)

HSP 1 Score: 149 bits (376), Expect = 6.200e-42
Identity = 72/131 (54.96%), Postives = 91/131 (69.47%), Query Frame = 1 
Query:    1 GFFRGLLPGLVGIVPARSTYFLAYSKSKEFWNNEARLGD---RHRDLTEILCGVTAGIVQNTITNPIWMVKTRMQLIADTATGQVAYGGYKQAVGAIWRDEGVRGFYKGMSASYWGCSEGCIYFVLYERLK 384
            GFFRGL P LVGI+P+RS YF +Y + K+      RLG           +L G  AGI  NT+TNPIWMV+TRMQL+ADT  GQ AY GY  A+  IWR++G++GFYKG+ ASYWGC+EG + F+LYE+ K
Sbjct:   57 GFFRGLPPTLVGIIPSRSAYFYSYQQIKK------RLGPYLPEGSPPNAMLAGFMAGITSNTLTNPIWMVRTRMQLLADTTAGQRAYNGYGDAISTIWREDGLKGFYKGIQASYWGCAEGAVQFILYEQFK 181
[Close]
BLAST of mRNA_H-paniculata_contig29569.8040.1 vs. uniprot
Match: K0TQ52_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TQ52_THAOC)

HSP 1 Score: 147 bits (370), Expect = 7.740e-41
Identity = 71/129 (55.04%), Postives = 94/129 (72.87%), Query Frame = 1 
Query:    1 GFFRGLLPGLVGIVPARSTYFLAYSKSKEFWNNEARLGDRHRDLTE-ILCGVTAGIVQNTITNPIWMVKTRMQLIADTATGQVAYGGYKQAVGAIWRDEGVRGFYKGMSASYWGCSEGCIYFVLYERLK 384
            GF++GL P L+GI+PARS YF +Y +SK F  N    G +   ++  +L G  AGI  NT+TNPIWMVK+R+QL+AD+   Q  Y GY+ AV +I++DEG+RGFYKG+SASYWGC EG   FV+YE+LK
Sbjct:   74 GFWKGLRPTLIGIIPARSIYFFSYEQSKRFLGNA---GLKEGQVSNALLSGFFAGISSNTLTNPIWMVKSRLQLLADSTANQKVYAGYRDAVKSIFQDEGIRGFYKGISASYWGCLEGAAQFVMYEQLK 199
[Close]
BLAST of mRNA_H-paniculata_contig29569.8040.1 vs. uniprot
Match: A0A7S0UKC2_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UKC2_9STRA)

HSP 1 Score: 146 bits (369), Expect = 8.830e-41
Identity = 71/128 (55.47%), Postives = 91/128 (71.09%), Query Frame = 1 
Query:    1 GFFRGLLPGLVGIVPARSTYFLAYSKSKEFWNNEARLGDRHRDLTEILCGVTAGIVQNTITNPIWMVKTRMQLIADTATGQVAYGGYKQAVGAIWRDEGVRGFYKGMSASYWGCSEGCIYFVLYERLK 384
            GF+RGL P L+GI+P+RS YF AY K K F +     G     L   + G TAGIV NT+TNPIWMV+TRMQ++ D A GQ  Y GY  A+  I+R+EG+ GFYKG+SASYWGC+EG + F++YE+LK
Sbjct:   66 GFWRGLPPTLMGIIPSRSAYFYAYQKMKTFLDPTLPEGSPPNAL---IAGFTAGIVGNTLTNPIWMVRTRMQILVDAAAGQRQYSGYGDAIKTIFREEGIGGFYKGISASYWGCAEGAMQFLIYEQLK 190
[Close]
BLAST of mRNA_H-paniculata_contig29569.8040.1 vs. uniprot
Match: A0A7S2RK71_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RK71_9STRA)

HSP 1 Score: 148 bits (374), Expect = 1.010e-40
Identity = 71/132 (53.79%), Postives = 92/132 (69.70%), Query Frame = 1 
Query:    1 GFFRGLLPGLVGIVPARSTYFLAYSKSKEFWNN----EARLGDRHRDLTEILCGVTAGIVQNTITNPIWMVKTRMQLIADTATGQVAYGGYKQAVGAIWRDEGVRGFYKGMSASYWGCSEGCIYFVLYERLK 384
            GF+RG+ P LVGI+PARS YF +Y ++K         E  +G+       ++ G  AGI  NT+TNPIWMVKTRMQL+AD + GQ AY  Y   +  IW++EGV GFYKG+SASYWGC+EGCI F+LYE++K
Sbjct:  150 GFWRGMKPTLVGIIPARSIYFYSYVQTKSALGKLNLPEGSVGNA------LISGFAAGIASNTLTNPIWMVKTRMQLLADNSVGQKAYANYGDVIQTIWKEEGVGGFYKGISASYWGCAEGCIQFILYEQIK 275
[Close]
BLAST of mRNA_H-paniculata_contig29569.8040.1 vs. uniprot
Match: A0A7S2EN67_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EN67_TRICV)

HSP 1 Score: 141 bits (355), Expect = 1.930e-40
Identity = 67/119 (56.30%), Postives = 89/119 (74.79%), Query Frame = 1 
Query:   28 LVGIVPARSTYFLAYSKSKEFWNNEARLGDRHRDLTEILCGVTAGIVQNTITNPIWMVKTRMQLIADTATGQVAYGGYKQAVGAIWRDEGVRGFYKGMSASYWGCSEGCIYFVLYERLK 384
            LVGI+PARS YF AY +SK    +          L  ++ G+ AG+  NT+TNPIWMVKTR+QL+AD++ GQ AY GY+ AV +I+R+EG+ GFY+G++ASYWGC+EGCI FVLYER+K
Sbjct:    1 LVGIIPARSAYFFAYEQSKRALGSWGL--SEGGVLNALISGLAAGVAGNTLTNPIWMVKTRVQLLADSSAGQRAYTGYRDAVRSIYREEGIGGFYRGITASYWGCAEGCIQFVLYERIK 117
[Close]
BLAST of mRNA_H-paniculata_contig29569.8040.1 vs. uniprot
Match: A0A1E7FGR2_9STRA (Mitochondrial carrier n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FGR2_9STRA)

HSP 1 Score: 145 bits (367), Expect = 1.680e-39
Identity = 69/128 (53.91%), Postives = 92/128 (71.88%), Query Frame = 1 
Query:    1 GFFRGLLPGLVGIVPARSTYFLAYSKSKEFWNNEARLGDRHRDLTEILCGVTAGIVQNTITNPIWMVKTRMQLIADTATGQVAYGGYKQAVGAIWRDEGVRGFYKGMSASYWGCSEGCIYFVLYERLK 384
            GFFRGL P L+GI+P+RS YF AY + K F +     G     +   + G +AGIV NT+T+PIWMV+TRMQL+ DTA GQ  Y GY  A+  I+++EG+ GFYKG+SASYWGC+EG + FV+YE++K
Sbjct:  173 GFFRGLPPTLIGIIPSRSAYFYAYQRMKTFLHPTLPEGSPPNAM---IAGFSAGIVGNTLTSPIWMVRTRMQLLIDTAAGQRQYAGYGDAIKTIFKEEGIGGFYKGISASYWGCAEGALQFVIYEKVK 297
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29569.8040.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSU3_ECTSI3.540e-7886.05Mitochondrial pyrimidine nucleotide transporter n=... [more]
A0A836CGB6_9STRA9.770e-4865.89Mitochondrial carrier domain-containing protein n=... [more]
W7THZ5_9STRA1.410e-4764.34Solute carrier family member 36 n=2 Tax=Monodopsid... [more]
A0A835YUQ3_9STRA1.240e-4260.31Mitochondrial carrier domain-containing protein n=... [more]
A0A8J9T6G8_PHATR6.200e-4254.96Hypothetical protein n=2 Tax=Phaeodactylum tricorn... [more]
K0TQ52_THAOC7.740e-4155.04Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S0UKC2_9STRA8.830e-4155.47Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
A0A7S2RK71_9STRA1.010e-4053.79Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S2EN67_TRICV1.930e-4056.30Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A1E7FGR2_9STRA1.680e-3953.91Mitochondrial carrier n=1 Tax=Fragilariopsis cylin... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig29569contigH-paniculata_contig29569:2467..2853 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score245.7
Seed ortholog evalue1.1e-62
Seed eggNOG ortholog2880.D7FSU3
Preferred nameSLC25A36
KEGG koko:K15116
KEGG TC2.A.29.10.4
Hectar predicted targeting categorysignal peptide
GOsGO:0000002,GO:0000959,GO:0001558,GO:0002082,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006091,GO:0006139,GO:0006140,GO:0006351,GO:0006390,GO:0006725,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006839,GO:0006862,GO:0006864,GO:0006996,GO:0007005,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008284,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009889,GO:0009987,GO:0010033,GO:0010243,GO:0010467,GO:0010564,GO:0015215,GO:0015218,GO:0015605,GO:0015748,GO:0015931,GO:0015932,GO:0015980,GO:0016020,GO:0016021,GO:0016043,GO:0016070,GO:0017004,GO:0017062,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019866,GO:0022607,GO:0022857,GO:0023052,GO:0030001,GO:0030302,GO:0030307,GO:0031090,GO:0031224,GO:0031323,GO:0031930,GO:0031966,GO:0031967,GO:0031975,GO:0032774,GO:0032868,GO:0032869,GO:0032870,GO:0033108,GO:0034551,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0040008,GO:0040011,GO:0042127,GO:0042221,GO:0042325,GO:0042391,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0043467,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0045927,GO:0046483,GO:0048311,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051174,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051646,GO:0051716,GO:0051726,GO:0051881,GO:0055085,GO:0055114,GO:0062012,GO:0065003,GO:0065007,GO:0065008,GO:0070838,GO:0070887,GO:0071156,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072511,GO:0072531,GO:0080090,GO:0090304,GO:0097659,GO:0140053,GO:1900542,GO:1901264,GO:1901360,GO:1901362,GO:1901576,GO:1901652,GO:1901653,GO:1901679,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1903426,GO:1903578,GO:1990314,GO:1990519,GO:1990542,GO:2000377
EggNOG free text desc.Belongs to the allantoicase family
EggNOG OGsCOG4266@1,KOG0757@2759
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons1
Model size387
Cds size387
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929902.8595061-CDS-H-paniculata_contig29569:2466..28531622929902.8595061-CDS-H-paniculata_contig29569:2466..2853Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29569 2467..2853 -
1691481062.3224866-CDS-H-paniculata_contig29569:2466..28531691481062.3224866-CDS-H-paniculata_contig29569:2466..2853Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29569 2467..2853 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig29569.8040.1prot_H-paniculata_contig29569.8040.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig29569 2467..2853 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig29569.8040.1

>prot_H-paniculata_contig29569.8040.1 ID=prot_H-paniculata_contig29569.8040.1|Name=mRNA_H-paniculata_contig29569.8040.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=129bp
GFFRGLLPGLVGIVPARSTYFLAYSKSKEFWNNEARLGDRHRDLTEILCG
VTAGIVQNTITNPIWMVKTRMQLIADTATGQVAYGGYKQAVGAIWRDEGV
RGFYKGMSASYWGCSEGCIYFVLYERLKR
back to top

mRNA from alignment at H-paniculata_contig29569:2467..2853-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig29569.8040.1 ID=mRNA_H-paniculata_contig29569.8040.1|Name=mRNA_H-paniculata_contig29569.8040.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=387bp|location=Sequence derived from alignment at H-paniculata_contig29569:2467..2853- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGATTTTTTCGAGGGTTGCTCCCCGGGCTGGTGGGAATTGTTCCCGCCCG
ATCCACGTACTTCTTGGCATACTCTAAGTCCAAAGAGTTCTGGAACAACG
AGGCTCGGTTGGGAGACAGGCATCGGGATTTGACGGAGATCTTGTGCGGC
GTAACCGCGGGTATAGTGCAGAACACCATCACAAATCCGATCTGGATGGT
GAAGACCCGCATGCAACTGATCGCGGATACGGCGACGGGGCAAGTGGCGT
ACGGGGGTTACAAACAGGCGGTGGGGGCGATCTGGAGGGATGAAGGTGTC
AGGGGATTTTACAAGGGCATGTCGGCGTCGTACTGGGGGTGCAGCGAGGG
ATGCATTTATTTTGTGTTGTACGAGCGACTGAAGAGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig29569:2467..2853-

>mRNA_H-paniculata_contig29569.8040.1 ID=mRNA_H-paniculata_contig29569.8040.1|Name=mRNA_H-paniculata_contig29569.8040.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=774bp|location=Sequence derived from alignment at H-paniculata_contig29569:2467..2853- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGATTTTTTCGAGGGTTGCTCCCCGGGCTGGTGGGAATTGTTCCCGCCCG
ATCCACGTACTTCTTGGCATACTCTAAGTCCAAAGAGTTCTGGAACAACG
AGGCTCGGTTGGGAGACAGGCATCGGGATTTGACGGAGATCTTGTGCGGC
GTAACCGCGGGTATAGTGCAGAACACCATCACAAATCCGATCTGGATGGT
GAAGACCCGCATGCAACTGATCGCGGATACGGCGACGGGGCAAGTGGCGT
ACGGGGGTTACAAACAGGCGGTGGGGGCGATCTGGAGGGATGAAGGTGTC
AGGGGATTTTACAAGGGCATGTCGGCGTCGTACTGGGGGTGCAGCGAGGG
ATGCATTTATTTTGTGTTGTACGAGCGACTGAAGAGGGGATTTTTTCGAG
GGTTGCTCCCCGGGCTGGTGGGAATTGTTCCCGCCCGATCCACGTACTTC
TTGGCATACTCTAAGTCCAAAGAGTTCTGGAACAACGAGGCTCGGTTGGG
AGACAGGCATCGGGATTTGACGGAGATCTTGTGCGGCGTAACCGCGGGTA
TAGTGCAGAACACCATCACAAATCCGATCTGGATGGTGAAGACCCGCATG
CAACTGATCGCGGATACGGCGACGGGGCAAGTGGCGTACGGGGGTTACAA
ACAGGCGGTGGGGGCGATCTGGAGGGATGAAGGTGTCAGGGGATTTTACA
AGGGCATGTCGGCGTCGTACTGGGGGTGCAGCGAGGGATGCATTTATTTT
GTGTTGTACGAGCGACTGAAGAGG
back to top