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Homology
BLAST of mRNA_H-paniculata_contig2945.8016.1 vs. uniprot
Match: D7G8Y2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Y2_ECTSI) HSP 1 Score: 96.7 bits (239), Expect = 4.390e-18 Identity = 41/95 (43.16%), Postives = 57/95 (60.00%), Query Frame = 2
Query: 20 GGEMKFLRCSRCRRGCCGDCFRRLPVYCRGPRVVVPVCRDCFRPLDFENRWHNHLVITNRER------------CGSQDDPLPGGEYSASPRRSS 268
G ++ RC+RCR+GCC C + LP +CRGP++V+PVC C R +DFENRWH+HL+ T+R+R G ++ G S SPR S
Sbjct: 417 GKGVEMARCARCRKGCCQACLKHLPAHCRGPKIVIPVCGTCARGVDFENRWHHHLLATSRDRDRCNGVSHLPAAAGQREQGGGGRSRSVSPRADS 511
BLAST of mRNA_H-paniculata_contig2945.8016.1 vs. uniprot
Match: A0A6H5KGA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGA5_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 3.290e-14 Identity = 56/146 (38.36%), Postives = 72/146 (49.32%), Query Frame = 2
Query: 56 RRGCCGDCFRRLPVYCRGPRVVVPVCRDCFRPLDFENRWHNHLVITNRER----------CGSQDDPLPGGEY--SASPRRSS--GS--------RFRVAKEGTVNIRLEPDQPSAAWRATNSAASFL--------RRSLSSGGDL 403
R+GCC C + LP +CRGP++V+PVC C R +DFENRWH+HL+ T+R+R + + GGE S SPR S GS R +G RL A +A S +S L RRSLSSG L
Sbjct: 1126 RKGCCQACLKHLPAHCRGPKIVIPVCGTCARGVDFENRWHHHLLATSRDRDRCNGVSHLSAAAGERKQGGGERPRSVSPRADSACGSSPGQSPKRRSEAGADGKRGARLR-GSGRAEQKALGSTSSSLLRAPSRLIRRSLSSGSSL 1270
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | mitochondrion |
| Exons | 4 |
| Model size | 1085 |
| Cds size | 1056 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2945.8016.1 >prot_H-paniculata_contig2945.8016.1 ID=prot_H-paniculata_contig2945.8016.1|Name=mRNA_H-paniculata_contig2945.8016.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=352bp
MKFLRCSRCRRGCCGDCFRRLPVYCRGPRVVVPVCRDCFRPLDFENRWHN
HLVITNRERCGSQDDPLPGGEYSASPRRSSGSRFRVAKEGTVNIRLEPDQ
PSAAWRATNSAASFLRRSLSSGGDLLASDTRRPLTLPVRVARSTSASASA
WSTVGSSLGSAFNALSSPSSTLVAVTNSSTAAATRGERPATTRSRGSVMA
SLTSAFASHGGVVVAPSPSPRSNASGSPDSVSPTPPVSTVLGKTVSLDTG
ISRSWSGRPRGGGGHPVISTAVDLFGVGAYGGGAAIAVGTGDRVSSIQEQ
GRHPSECPCGATALYCEVIGVCPKALTTTASVVSVAAADSTGVVEAEGAE
AA back to topmRNA from alignment at H-paniculata_contig2945:4357..6724- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig2945.8016.1 ID=mRNA_H-paniculata_contig2945.8016.1|Name=mRNA_H-paniculata_contig2945.8016.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2368bp|location=Sequence derived from alignment at H-paniculata_contig2945:4357..6724- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGACCGGTACCGGGTGATGGGGGGGAGATGAAGTTTTTGAGGTGCTCGC
GGTGTAGGAGGGGTTGCTGCGGGGACTGTTTCAGGCGGCTGCCGGTGTAC
TGCAGAGGGCCCAGAGTCGTCGTTCCAGGTGTGTGTTTATAGAGGCTTGT
TTATAGGGCATCTTATCGAATGAGTCCATGGTTGATTCTTGAGAGTGTTG
TAGTCGTGGAAATCGCGCGCGGGCCTAATCTGCGAGCACCACTCTAGTTA
ACCCCTACCCTAACAGCTAGCTTAACTTGCCTAAAAAGACATATGGGTAC
CAATTAACACCCCTCGTCCCTCTCCTCCTTCCCGCTGTCGCTCTCTCCCG
CTCCCTGGGTTTCCTCATCAGTTTGTCGAGATTGTTTCCGCCCCCTAGAC
TTCGAGAATCGATGGCACAACCACCTTGTTATCACGAACCGCGAACGCTG
TGGGAGCCAAGACGATCCCTTGCCGGGTGGTGAATACTCAGCGTCACCGC
GGCGGAGCTCTGGCAGCCGATTTCGGGTCGCGAAGGAAGGGACCGTTAAC
ATTCGCTTGGAGCCCGACCAACCGTCGGCCGCGTGGCGAGCGACAAACTC
TGCGGCCAGTTTTTTGCGGCGCAGCTTGAGCAGCGGGGGGGACCTATTGG
CGTCCGGTTAGTGTTTGATAGTATGGACGTCACTAGGTGCTATTGAAACC
GAAAGCTTGCGTATTGTCGCCCGGATAGATCCGCCGGAAGGTGTTATGCC
AGATCTATCATCAGATGGATAGATGGTGACAACAATCCAGGTTCTTACTT
GTCGAGAAAATCGAGCTTGGGAAAAAAACAAGAAAAAAACGGGGGTTCGT
ATACCGTGGGCTACCGGTTTCATGGGTTAATTCAACTGATGCCAATTCAA
CACACGATTTTTGATCGTGAGGGTGATAAGGCAGTTGGTGACGTAATTAT
TTTCCCCTGATCCCTTGAAAAAATCGCGCGTCTGAGAGTTGGTTGATTTT
CGAGCATATACTATACTCCTGTGAAGACAAAAGCGTGCAGTCTACTTGGC
TCCAACGCAAAAAAACCGTCCTCGCCAAAACCTCATATACCCCATCGGTT
CTCAGTTAACCTTCGTTTCCTGTCCTCGGGAATGGGGGGTGGGGAAAATA
TTACAAAATATCAGCAGTAGCAGCACGCGAAAACGGTGCAGGCACGGGTC
CAATGGTACGATTGACAGGAGTACACCCTCGACCATCTACCTTCTCCTCC
ACCACCACCTTTTCAGATACGAGACGTCCCCTCACCCTCCCAGTGCGGGT
AGCCCGGTCCACCTCGGCGTCGGCTTCCGCGTGGTCGACCGTCGGCTCCT
CTCTCGGGTCGGCTTTCAACGCGTTGAGTTCTCCCTCTTCTACCCTCGTC
GCCGTCACCAACTCTTCCACCGCTGCCGCTACCCGAGGTGAACGACCGGC
TACGACTCGCAGCCGCGGGAGCGTCATGGCGAGCTTAACGTCAGCGTTCG
CGAGCCATGGGGGCGTCGTCGTGGCCCCGAGTCCTTCGCCGCGGTCAAAC
GCGTCCGGCAGCCCCGACTCGGTGTCACCCACGCCTCCCGTGTCCACCGT
GTTGGGCAAGACCGTTAGCTTGGACACGGGGATTAGCAGAAGCTGGTCTG
GACGGCCGCGAGGTGGCGGGGGTCATCCTGTAATATCCACGGCGGTGGAT
TTGTTCGGCGTTGGTGCTTATGGTGGTGGTGCGGCGATAGCGGTTGGTAC
TGGAGATCGGGTGTCATCCATCCAGGAGCAGGGTCGGCATCCATCGGAGT
GCCCCTGTGGCGCAACTGCGTTGTACTGTGAGGTAAGGGGAGTTTGCGTG
GTGGTTTTGGGGATGGGGCGCCTAGGCGGGGGGTAGGTTGGGGGGGTTGT
TGAGGTTATGCAGTTAACCTCGAATCTCAGTTGTGTGCACTCATCAGCAA
ATTAAGGGTTATGATGTGTGCTATGGTTGCGCGTATTACTACACGAACGC
GCCATAATAACCGCTATGTCGCGGCTTTTGTTGCTCCTCTTTCGTCCGAC
GCGCGAGTATATGATACTATTCCGAGAGACTGCCACACACCCACATTCCA
ACCATCCAACCATCATTGCTAGAACATTTGAGCAGCATAGTTTGCGATTT
TTTTCCCGAGATCGGACACCGCCATCACGGCCAAAACACGTGAAAGCAAT
TGCACCGGCGTCGCTGTAGTACATATGCCAAACTGTCGACACCACACAAC
ATGCGTTGTACAGGTGATCGGCGTTTGTCCCAAAGCTCTCACGACAACCG
CGAGTGTTGTATCCGTTGCCGCGGCTGACTCGACCGGGGTGGTGGAGGCG
GAGGGGGCGGAGGCGGCG back to topCoding sequence (CDS) from alignment at H-paniculata_contig2945:4357..6724- >mRNA_H-paniculata_contig2945.8016.1 ID=mRNA_H-paniculata_contig2945.8016.1|Name=mRNA_H-paniculata_contig2945.8016.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2112bp|location=Sequence derived from alignment at H-paniculata_contig2945:4357..6724- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGTTTTTGAGGTGCTCGCGGTGTAGGAGGGGTTGCTGCGGGGACTG
TTTCAGGCGGCTGCCGGTGTACTGCAGAGGGCCCAGAGTCGTCGTTCCAG
ATGAAGTTTTTGAGGTGCTCGCGGTGTAGGAGGGGTTGCTGCGGGGACTG
TTTCAGGCGGCTGCCGGTGTACTGCAGAGGGCCCAGAGTCGTCGTTCCAG
TTTGTCGAGATTGTTTCCGCCCCCTAGACTTCGAGAATCGATGGCACAAC
CACCTTGTTATCACGAACCGCGAACGCTGTGGGAGCCAAGACGATCCCTT
GCCGGGTGGTGAATACTCAGCGTCACCGCGGCGGAGCTCTGGCAGCCGAT
TTCGGGTCGCGAAGGAAGGGACCGTTAACATTCGCTTGGAGCCCGACCAA
CCGTCGGCCGCGTGGCGAGCGACAAACTCTGCGGCCAGTTTTTTGCGGCG
CAGCTTGAGCAGCGGGGGGGACCTATTGGCGTCCGTTTGTCGAGATTGTT
TCCGCCCCCTAGACTTCGAGAATCGATGGCACAACCACCTTGTTATCACG
AACCGCGAACGCTGTGGGAGCCAAGACGATCCCTTGCCGGGTGGTGAATA
CTCAGCGTCACCGCGGCGGAGCTCTGGCAGCCGATTTCGGGTCGCGAAGG
AAGGGACCGTTAACATTCGCTTGGAGCCCGACCAACCGTCGGCCGCGTGG
CGAGCGACAAACTCTGCGGCCAGTTTTTTGCGGCGCAGCTTGAGCAGCGG
GGGGGACCTATTGGCGTCCGATACGAGACGTCCCCTCACCCTCCCAGTGC
GGGTAGCCCGGTCCACCTCGGCGTCGGCTTCCGCGTGGTCGACCGTCGGC
TCCTCTCTCGGGTCGGCTTTCAACGCGTTGAGTTCTCCCTCTTCTACCCT
CGTCGCCGTCACCAACTCTTCCACCGCTGCCGCTACCCGAGGTGAACGAC
CGGCTACGACTCGCAGCCGCGGGAGCGTCATGGCGAGCTTAACGTCAGCG
TTCGCGAGCCATGGGGGCGTCGTCGTGGCCCCGAGTCCTTCGCCGCGGTC
AAACGCGTCCGGCAGCCCCGACTCGGTGTCACCCACGCCTCCCGTGTCCA
CCGTGTTGGGCAAGACCGTTAGCTTGGACACGGGGATTAGCAGAAGCTGG
TCTGGACGGCCGCGAGGTGGCGGGGGTCATCCTGTAATATCCACGGCGGT
GGATTTGTTCGGCGTTGGTGCTTATGGTGGTGGTGCGGCGATAGCGGTTG
GTACTGGAGATCGGGTGTCATCCATCCAGGAGCAGGGTCGGCATCCATCG
GAGTGCCCCTGTGGCGCAACTGCGTTGTACTGTGAGATACGAGACGTCCC
CTCACCCTCCCAGTGCGGGTAGCCCGGTCCACCTCGGCGTCGGCTTCCGC
GTGGTCGACCGTCGGCTCCTCTCTCGGGTCGGCTTTCAACGCGTTGAGTT
CTCCCTCTTCTACCCTCGTCGCCGTCACCAACTCTTCCACCGCTGCCGCT
ACCCGAGGTGAACGACCGGCTACGACTCGCAGCCGCGGGAGCGTCATGGC
GAGCTTAACGTCAGCGTTCGCGAGCCATGGGGGCGTCGTCGTGGCCCCGA
GTCCTTCGCCGCGGTCAAACGCGTCCGGCAGCCCCGACTCGGTGTCACCC
ACGCCTCCCGTGTCCACCGTGTTGGGCAAGACCGTTAGCTTGGACACGGG
GATTAGCAGAAGCTGGTCTGGACGGCCGCGAGGTGGCGGGGGTCATCCTG
TAATATCCACGGCGGTGGATTTGTTCGGCGTTGGTGCTTATGGTGGTGGT
GCGGCGATAGCGGTTGGTACTGGAGATCGGGTGTCATCCATCCAGGAGCA
GGGTCGGCATCCATCGGAGTGCCCCTGTGGCGCAACTGCGTTGTACTGTG
AGGTGATCGGCGTTTGTCCCAAAGCTCTCACGACAACCGCGAGTGTTGTA
TCCGTTGCCGCGGCTGACTCGACCGGGGTGGTGGAGGCGGAGGGGGCGGA
GGCGGCGGTGATCGGCGTTTGTCCCAAAGCTCTCACGACAACCGCGAGTG
TTGTATCCGTTGCCGCGGCTGACTCGACCGGGGTGGTGGAGGCGGAGGGG
GCGGAGGCGGCG back to top
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