mRNA_H-paniculata_contig2939.8005.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2939.8005.1
Unique NamemRNA_H-paniculata_contig2939.8005.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2939.8005.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2939contigH-paniculata_contig2939:450..1584 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.5
Seed ortholog evalue1.3e-26
Seed eggNOG ortholog2880.D7G0A1
KEGG koko:K03178,ko:K10586,ko:K10699
KEGG Pathwayko04120,ko04214,ko04215,ko05012,map04120,map04214,map04215,map05012
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGsCOG5078@1,KOG0895@2759
EC2.3.2.23,6.2.1.45
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121,ko04147
Exons1
Model size1137
Cds size1134
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929899.3756204-CDS-H-paniculata_contig2939:449..15831622929899.3756204-CDS-H-paniculata_contig2939:449..1583Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2939 450..1583 +
1691481060.7338066-CDS-H-paniculata_contig2939:449..15831691481060.7338066-CDS-H-paniculata_contig2939:449..1583Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2939 450..1583 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2939.8005.1prot_H-paniculata_contig2939.8005.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2939 450..1583 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2939.8005.1

>prot_H-paniculata_contig2939.8005.1 ID=prot_H-paniculata_contig2939.8005.1|Name=mRNA_H-paniculata_contig2939.8005.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=378bp
YDGLSPISLINHHTTMASHQIVDLVLSDDEDNCESRASSPSAIASKSSSS
TSSSLLPIFSSPLVPMTSSEAHHLRQIDLTDETPSASALQLSAPRTRRAR
GGESSSIALPSGVSPSLPMPVPLPTPGLGSGSSFPRRARLTKCTSCLRDD
VPRRETFCLEACAHQLCPTCVAGKICNAMQRPAESTAETETPVCPVCHCD
RRVSTRDLALLLPQHAWGALQARRLTAFRRRVEKGVCCPGCSVWIEASPS
DNATRSSGELVVDRGEGGGGGGKRSHGTVKERAAALLSVPELTCGSCRAR
ACRFCGVRVGGRNNKATPASSHGSCIDWKLWAVAGLLDLLEQLIANPTDV
ALTGPVKAVAAASSRGRGRGRGYGGSRG
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mRNA from alignment at H-paniculata_contig2939:450..1584+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2939.8005.1 ID=mRNA_H-paniculata_contig2939.8005.1|Name=mRNA_H-paniculata_contig2939.8005.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1135bp|location=Sequence derived from alignment at H-paniculata_contig2939:450..1584+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATGATGGTTTATCCCCCATCTCTCTAATCAATCATCATACCACTATGGC
TAGCCACCAGATAGTCGATCTTGTACTCTCAGACGATGAGGACAACTGCG
AGAGCCGTGCCTCCTCGCCCTCCGCCATAGCCAGTAAATCATCATCGTCT
ACCTCTTCTTCACTTCTTCCCATTTTCTCATCGCCGCTGGTGCCGATGAC
ATCCTCCGAGGCGCACCATTTGCGGCAGATTGACCTAACCGATGAAACGC
CCTCTGCTTCTGCTCTACAACTGTCTGCACCCCGTACGAGGAGAGCACGG
GGCGGGGAATCTTCCTCCATCGCGTTGCCGTCCGGGGTTAGCCCCTCGCT
GCCGATGCCAGTGCCGCTACCGACGCCGGGACTAGGCAGTGGGTCGTCTT
TTCCGAGGCGTGCTCGACTCACCAAGTGCACCTCGTGCCTGCGGGACGAT
GTACCTCGGAGGGAAACGTTCTGCCTGGAGGCCTGCGCGCACCAGCTATG
TCCAACGTGTGTGGCAGGAAAGATTTGCAATGCCATGCAACGACCGGCAG
AGTCGACCGCCGAAACCGAGACACCCGTTTGCCCTGTCTGTCACTGCGAC
CGCAGGGTCTCCACTCGAGATCTAGCGTTGCTCCTCCCTCAACACGCGTG
GGGGGCTCTCCAAGCGAGAAGACTGACCGCTTTCCGTAGGCGCGTGGAGA
AAGGAGTGTGCTGCCCCGGGTGCTCCGTCTGGATAGAGGCCTCTCCGTCG
GATAATGCTACGAGGTCATCAGGGGAACTTGTTGTGGATCGAGGTGAGGG
CGGCGGCGGTGGCGGCAAACGTTCACACGGCACGGTGAAGGAGAGAGCAG
CGGCCCTTCTCTCGGTCCCTGAGCTGACCTGCGGTAGCTGCAGGGCGCGG
GCTTGCCGCTTCTGCGGGGTGCGCGTGGGAGGAAGGAACAACAAGGCGAC
GCCCGCCAGCTCGCACGGATCTTGCATAGACTGGAAGCTGTGGGCGGTCG
CCGGCCTTCTGGACTTGCTGGAGCAGCTTATCGCGAATCCAACGGACGTT
GCTCTAACAGGCCCCGTCAAGGCGGTGGCCGCGGCAAGCAGTCGAGGGAG
AGGTCGTGGTCGGGGATACGGTGGCAGTCGAGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig2939:450..1584+

>mRNA_H-paniculata_contig2939.8005.1 ID=mRNA_H-paniculata_contig2939.8005.1|Name=mRNA_H-paniculata_contig2939.8005.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2268bp|location=Sequence derived from alignment at H-paniculata_contig2939:450..1584+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATGATGGTTTATCCCCCATCTCTCTAATCAATCATCATACCACTATGGC
TAGCCACCAGATAGTCGATCTTGTACTCTCAGACGATGAGGACAACTGCG
AGAGCCGTGCCTCCTCGCCCTCCGCCATAGCCAGTAAATCATCATCGTCT
ACCTCTTCTTCACTTCTTCCCATTTTCTCATCGCCGCTGGTGCCGATGAC
ATCCTCCGAGGCGCACCATTTGCGGCAGATTGACCTAACCGATGAAACGC
CCTCTGCTTCTGCTCTACAACTGTCTGCACCCCGTACGAGGAGAGCACGG
GGCGGGGAATCTTCCTCCATCGCGTTGCCGTCCGGGGTTAGCCCCTCGCT
GCCGATGCCAGTGCCGCTACCGACGCCGGGACTAGGCAGTGGGTCGTCTT
TTCCGAGGCGTGCTCGACTCACCAAGTGCACCTCGTGCCTGCGGGACGAT
GTACCTCGGAGGGAAACGTTCTGCCTGGAGGCCTGCGCGCACCAGCTATG
TCCAACGTGTGTGGCAGGAAAGATTTGCAATGCCATGCAACGACCGGCAG
AGTCGACCGCCGAAACCGAGACACCCGTTTGCCCTGTCTGTCACTGCGAC
CGCAGGGTCTCCACTCGAGATCTAGCGTTGCTCCTCCCTCAACACGCGTG
GGGGGCTCTCCAAGCGAGAAGACTGACCGCTTTCCGTAGGCGCGTGGAGA
AAGGAGTGTGCTGCCCCGGGTGCTCCGTCTGGATAGAGGCCTCTCCGTCG
GATAATGCTACGAGGTCATCAGGGGAACTTGTTGTGGATCGAGGTGAGGG
CGGCGGCGGTGGCGGCAAACGTTCACACGGCACGGTGAAGGAGAGAGCAG
CGGCCCTTCTCTCGGTCCCTGAGCTGACCTGCGGTAGCTGCAGGGCGCGG
GCTTGCCGCTTCTGCGGGGTGCGCGTGGGAGGAAGGAACAACAAGGCGAC
GCCCGCCAGCTCGCACGGATCTTGCATAGACTGGAAGCTGTGGGCGGTCG
CCGGCCTTCTGGACTTGCTGGAGCAGCTTATCGCGAATCCAACGGACGTT
GCTCTAACAGGCCCCGTCAAGGCGGTGGCCGCGGCAAGCAGTCGAGGGAG
AGGTCGTGGTCGGGGATACGGTGGCAGTCGAGGGTATGATGGTTTATCCC
CCATCTCTCTAATCAATCATCATACCACTATGGCTAGCCACCAGATAGTC
GATCTTGTACTCTCAGACGATGAGGACAACTGCGAGAGCCGTGCCTCCTC
GCCCTCCGCCATAGCCAGTAAATCATCATCGTCTACCTCTTCTTCACTTC
TTCCCATTTTCTCATCGCCGCTGGTGCCGATGACATCCTCCGAGGCGCAC
CATTTGCGGCAGATTGACCTAACCGATGAAACGCCCTCTGCTTCTGCTCT
ACAACTGTCTGCACCCCGTACGAGGAGAGCACGGGGCGGGGAATCTTCCT
CCATCGCGTTGCCGTCCGGGGTTAGCCCCTCGCTGCCGATGCCAGTGCCG
CTACCGACGCCGGGACTAGGCAGTGGGTCGTCTTTTCCGAGGCGTGCTCG
ACTCACCAAGTGCACCTCGTGCCTGCGGGACGATGTACCTCGGAGGGAAA
CGTTCTGCCTGGAGGCCTGCGCGCACCAGCTATGTCCAACGTGTGTGGCA
GGAAAGATTTGCAATGCCATGCAACGACCGGCAGAGTCGACCGCCGAAAC
CGAGACACCCGTTTGCCCTGTCTGTCACTGCGACCGCAGGGTCTCCACTC
GAGATCTAGCGTTGCTCCTCCCTCAACACGCGTGGGGGGCTCTCCAAGCG
AGAAGACTGACCGCTTTCCGTAGGCGCGTGGAGAAAGGAGTGTGCTGCCC
CGGGTGCTCCGTCTGGATAGAGGCCTCTCCGTCGGATAATGCTACGAGGT
CATCAGGGGAACTTGTTGTGGATCGAGGTGAGGGCGGCGGCGGTGGCGGC
AAACGTTCACACGGCACGGTGAAGGAGAGAGCAGCGGCCCTTCTCTCGGT
CCCTGAGCTGACCTGCGGTAGCTGCAGGGCGCGGGCTTGCCGCTTCTGCG
GGGTGCGCGTGGGAGGAAGGAACAACAAGGCGACGCCCGCCAGCTCGCAC
GGATCTTGCATAGACTGGAAGCTGTGGGCGGTCGCCGGCCTTCTGGACTT
GCTGGAGCAGCTTATCGCGAATCCAACGGACGTTGCTCTAACAGGCCCCG
TCAAGGCGGTGGCCGCGGCAAGCAGTCGAGGGAGAGGTCGTGGTCGGGGA
TACGGTGGCAGTCGAGGG
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