mRNA_H-paniculata_contig29261.7979.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig29261.7979.1
Unique NamemRNA_H-paniculata_contig29261.7979.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29261.7979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig29261contigH-paniculata_contig29261:2273..3007 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size257
Cds size174
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig29261.7979.1prot_H-paniculata_contig29261.7979.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig29261 2273..2924 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929895.1569476-CDS-H-paniculata_contig29261:2272..23801622929895.1569476-CDS-H-paniculata_contig29261:2272..2380Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29261 2273..2380 +
1691481059.241424-CDS-H-paniculata_contig29261:2272..23801691481059.241424-CDS-H-paniculata_contig29261:2272..2380Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29261 2273..2380 +
1622929895.1726189-CDS-H-paniculata_contig29261:2858..29241622929895.1726189-CDS-H-paniculata_contig29261:2858..2924Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29261 2859..2924 +
1691481059.2503834-CDS-H-paniculata_contig29261:2858..29241691481059.2503834-CDS-H-paniculata_contig29261:2858..2924Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29261 2859..2924 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929895.1990345-UTR-H-paniculata_contig29261:2924..30071622929895.1990345-UTR-H-paniculata_contig29261:2924..3007Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig29261 2925..3007 +
1691481059.2637978-UTR-H-paniculata_contig29261:2924..30071691481059.2637978-UTR-H-paniculata_contig29261:2924..3007Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig29261 2925..3007 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig29261.7979.1

>prot_H-paniculata_contig29261.7979.1 ID=prot_H-paniculata_contig29261.7979.1|Name=mRNA_H-paniculata_contig29261.7979.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=58bp
PSHAPTASFPSRAHRRSSARTRSVPLASAVKTELTDMSTPERIHIRGINL
VGLAVHV*
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mRNA from alignment at H-paniculata_contig29261:2273..3007+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig29261.7979.1 ID=mRNA_H-paniculata_contig29261.7979.1|Name=mRNA_H-paniculata_contig29261.7979.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=735bp|location=Sequence derived from alignment at H-paniculata_contig29261:2273..3007+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTTCCCATGCCCCAACGGCCTCGTTCCCATCCAGGGCGCACAGGAGATC
GAGTGCACGAACCAGATCTGTACCGCTGGCCAGTGCTGTGAAAACTGAAT
TAACTGACGTGAGTAGAACATGGTCGGACCGTGCTTTGTGTTATTATAGT
ACAAGGTAGTAACTAGACCGGGGTTGTTCCAAGCCTGGAGCACGTTGAAA
TACCAAATCTTGAAATCTTGGACACAAGACGTAGTGGAACGCAGCGAGTT
CTTGGCGATGGTAGCAGCTGATGAGCTGACTTGACACCGGTTCTCCCACA
TTCGGAAGGAATCCTTACAAAACCCAGCTTCGGGTGTTGAAACTATAGCA
GGAGCTGTTGGAGGTCACGACACCCTCCACATAACAAATGGTGTGCGGTT
GTCCGCATGCGTAAGATGACGGAACCAGGCTGGACTTGATGGACTAGGAG
CTTTTACGAGGTAGCTTATACACTGAGTATTACTTTTAACACAGCTTGTA
TCGTGATGCTCCTAACTAGGGCTAGGGGACACATCCTTTCCTCTGCATTT
GCTCGTTTGCCGCACTCGTTTGATGTTTTTCTGCAGATGAGTACTCCAGA
ACGGATTCACATCCGGGGCATCAACCTTGTAGGATTAGCCGTGCACGTGT
AGCAGTTGCAGTTGACCATGGGCTAGTACGTGCGACGCGCTGATCATTCG
GACCTTGTGTTGTGTTTGTCAACGGTCATCCATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig29261:2273..3007+

>mRNA_H-paniculata_contig29261.7979.1 ID=mRNA_H-paniculata_contig29261.7979.1|Name=mRNA_H-paniculata_contig29261.7979.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at H-paniculata_contig29261:2273..3007+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTTCCCATGCCCCAACGGCCTCGTTCCCATCCAGGGCGCACAGGAGATC
GAGTGCACGAACCAGATCTGTACCGCTGGCCAGTGCTGTGAAAACTGAAT
TAACTGACCCTTCCCATGCCCCAACGGCCTCGTTCCCATCCAGGGCGCAC
AGGAGATCGAGTGCACGAACCAGATCTGTACCGCTGGCCAGTGCTGTGAA
AACTGAATTAACTGACATGAGTACTCCAGAACGGATTCACATCCGGGGCA
TCAACCTTGTAGGATTAGCCGTGCACGTGTAGATGAGTACTCCAGAACGG
ATTCACATCCGGGGCATCAACCTTGTAGGATTAGCCGTGCACGTGTAG
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