mRNA_H-paniculata_contig2923.7973.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig2923.7973.1 vs. uniprot
Match: D8LSN2_ECTSI (Conserved oligomeric Golgi complex subunit 5 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSN2_ECTSI) HSP 1 Score: 443 bits (1140), Expect = 1.150e-137 Identity = 373/654 (57.03%), Postives = 413/654 (63.15%), Query Frame = 2
Query: 284 SAESVSSQAEITLDSMSSHIARIEAAIRTHILDNEEDFLGSVGGVTELSRRTEEFRNGVRELRRSFMRVKREVSEPHEAVRLRTXXXXXXXXXXXXXXXXXXXXAALRRLRGQEDALGLDPTGMPKAGAGASG------------------AGDLRELAKAAQSLQELEGMMRDPDVAELEVVARERRYVESYSAAVRRMSADSLGRGLKALNQTDVGGALQVFFNLGCLSARVKACVTHLADQADAAASAALHPAALEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------RALSMRAHAGKLAAAIHTTSMEAWGLQRVLEKKRDPTTRALLDSAVRADRTAG------LSAGAYSAYWDGLCRAVRGAVERTLAVEGVDINGIGIGXXXXXXXXXXXXXXXXXXXXXGEAVLVAMYPYLRKAFLHLIRRLEEGTRGGDKQHARVIEGGGIGVAGTAAVTAGILTSI--------PGGGNTNGGLGSGGILGGSRWLSLAFDNETDSSSDEAQSDIPVAAVASAGNAEA-------GAESGAGPTTGNNRGNTGLWRKGVAGRGGEADGETGGAEAATGSS----NEGATLLEALGPLRDLFLARSLERLTIPVEQMFPQ 2071
SAESVSSQAEITLDSMSSHIARIEAAIR+HILDNEEDFLGSVGGV+ELSRRTEEFR+GVRELRRSF RV+REVSEPHEAVR+RT +ALRRLRGQED LGL+ A DLRELAKAAQSLQELE +RDP+VAELEVVARER YVE+ AAVRRMSADSL RG+K+LNQTD+GGALQVFFNL CL ARVKACVTHLA +AD A S AL P AL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX R SMRAHAGKLAAA+H TSMEAWGLQRVL+KKRDPTTR LLD+ VRADR+AG L AGAY AYWDGLCRAVRG+VER L +G + G XXX LVAMYP+LRKAFL LI RLEE T PG L +GGILGGSRWL+LA +++ ++ S + ++AG+ E GAE+GAGP +G R+ + RGG+ ++GA LLEALGPLRDLFLARSLERLT PVEQMFPQ
Sbjct: 54 SAESVSSQAEITLDSMSSHIARIEAAIRSHILDNEEDFLGSVGGVSELSRRTEEFRDGVRELRRSFARVQREVSEPHEAVRVRTQQLKNLHDATRLLKRALRFLSALRRLRGQEDVLGLEAAXXXXXXXXXXXXXXVGXXXXXXXXXXXXXAADLRELAKAAQSLQELESTLRDPEVAELEVVARERAYVEACGAAVRRMSADSLARGMKSLNQTDIGGALQVFFNLECLPARVKACVTHLAQEADEATSEALQPEALADATSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGRRSPATRDAGARRRTASMRAHAGKLAAALHGTSMEAWGLQRVLDKKRDPTTRTLLDATVRADRSAGGPGGLSLRAGAYRAYWDGLCRAVRGSVERALEADGA-VGGX---------------------XXXXXVALVAMYPFLRKAFLRLISRLEEATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWQRPGAVGQQQRL-AGGILGGSRWLALALEDDYNNLSLD---------PSAAGDEEQERQWDRRGAEAGAGPASG---------RRVLGLRGGKXXXXXXXXXXXXXXXXXXXSDGARLLEALGPLRDLFLARSLERLTTPVEQMFPQ 666
BLAST of mRNA_H-paniculata_contig2923.7973.1 vs. uniprot
Match: A0A7S2B1Z9_9STRA (Conserved oligomeric Golgi complex subunit 5 (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B1Z9_9STRA) HSP 1 Score: 114 bits (285), Expect = 3.600e-24 Identity = 100/328 (30.49%), Postives = 151/328 (46.04%), Query Frame = 2
Query: 347 RIEAAIRTHILDNEEDFLGSVGGVTELSRRTEEFRNGVRELRRSFMRVKREVSEPHEAVRLRTXXXXXXXXXXXXXXXXXXXXAALRRLRGQEDALGLDP-----TGMPKAGAGASGAGDLRELAKAAQSLQELEGMMRDPDVAELEVVARERRYVESYSAAVRRMSADSLGRGLKALNQTDVGGALQVFFNLGCLSARVKACVTHLADQADAAASAALHPAALEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRALSMRA--HAGKLAAAIHTTSMEAWGLQRVLEKKRDPTT-RALLDSAVRADR 1306
+I AAI+TH+ ++ ++ L V G+ EL E GV++++RS R+ R++ EP +++R +R+LR E A L+ TGMP G +LRELAKAAQ +++LE +M D + E+++V ER +V Y +A+R ++ L G+++LNQ DVG ALQVF+NLG L RV+ + + A+A PAALE R L RA HA + A + ++AW L RVL KK DP T + LD + A++
Sbjct: 1 QINAAIQTHMSEHRDELLQGVVGIKELQADYEGLGMGVQDVKRSVQRISRDLMEPFNVIKMRAAMLGRVHTSSLLLKKVLRVTMTMRKLRALEVAAKLEKCNDSMTGMPDILEGF----ELRELAKAAQLIRDLEILMADKALVEIDLVNDERVHVRVYGSAIRLVAQARLREGMRSLNQADVGTALQVFYNLGILVDRVRDTLDGVVSAIADRAAATFDPAALEALARAKADTSSGSSSTATQIKGRATAATQ---------------------RYLRRRAQEHAEEFAEFMLDRLLQAWNLDRVLGKKNDPVTHQCFLDVCLDANQ 303
BLAST of mRNA_H-paniculata_contig2923.7973.1 vs. uniprot
Match: W7U1N2_9STRA (Conserved oligomeric Golgi complex subunit 5 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U1N2_9STRA) HSP 1 Score: 107 bits (266), Expect = 3.920e-20 Identity = 106/394 (26.90%), Postives = 164/394 (41.62%), Query Frame = 2
Query: 116 DPVFRGFLEAGFDPAAFASKIVKADVGKTAAHTPVLASPAGDAVATGERVASAPVVSAESVSSQAEITLDSMSSHIARIEAAIRTHILDNEEDFLGSVGGVTELSRRTEEFRNGVRELRRSFMRVKREVSEPHEAVRLRTXXXXXXXXXXXXXXXXXXXXAALRRLRGQEDALGLDPTGMPKAGAGASGAG-DLRELAKAAQSLQELEGMMRDPDVAELEVVARERRYVESYSAAVRRMSADSLGRGLKALNQTDVGGALQVFFNLGCLSARVKACVTHLADQADAAASAALHPAALEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRALSMRAHAGKLAAAIHTTSMEAWGLQRVLEKKRDPTTRALLDSAV 1294
DP LE FD A+F++ +V D A +P+ R AS+ S S S+ E+ + ++ + +EAAI HIL ++++ + +G + EL + +ELRRS ++ E+ EP++ RT AL R++ +D + K ++ G +LR++AKAAQ L E+E ++ DP +AEL +V ER YV S +RR SL + ++NQ D+ ALQVF NL L+ V C+ + + A AL P ALE R + +R H + A + +S++ W LQR L K D T L S V
Sbjct: 46 DPALAPLLEPHFDAASFSAHVVGTDNASGATGSPL-------------RTASSTRPS--SARSRVEVMVAQLTEQLTIVEAAIEKHILQHQQELMQGMGDLGELRENCDVLTVRSKELRRSVKKLSAELLEPYKDTERRTQQLRRIHESNDILKKIARFLVALTRIKESSTLSNVD---LAKEDPESARKGLELRDIAKAAQHLHEVEAILEDPALAELSLVTAERPYVASLGLGLRRTGMASLKAAMLSMNQADLDPALQVFHNLQHLAPVVLKCLAAMVAEGAEATRLALDPGALEAVVAPDSSVPRLSSTAPTSSPPASTATSQRQGSGEMEAIALRQ-------RQVRIRDHCDRWATVLLQSSLKVWSLQRALHMKTDAATNQDLLSIV 414
BLAST of mRNA_H-paniculata_contig2923.7973.1 vs. uniprot
Match: A0A6H5JJJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ4_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 4.290e-20 Identity = 49/53 (92.45%), Postives = 52/53 (98.11%), Query Frame = 2
Query: 329 MSSHIARIEAAIRTHILDNEEDFLGSVGGVTELSRRTEEFRNGVRELRRSFMR 487
MSSHIARIEAAIR+HILDNEEDFLGSVGGV+ELSRRTEEFR+GVRELRRSF R
Sbjct: 1 MSSHIARIEAAIRSHILDNEEDFLGSVGGVSELSRRTEEFRDGVRELRRSFAR 53
BLAST of mRNA_H-paniculata_contig2923.7973.1 vs. uniprot
Match: A0A6P8II33_ACTTE (Conserved oligomeric Golgi complex subunit 5 n=2 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8II33_ACTTE) HSP 1 Score: 75.5 bits (184), Expect = 2.210e-10 Identity = 62/282 (21.99%), Postives = 122/282 (43.26%), Query Frame = 2
Query: 89 SEILGRIEDDPVFRGFLEAGFDPAAFASKIVKADVGKTAAHTPVLASPAGDAVATGERVASAPVVSAESVSSQAEITLDSMSSHIARIEAAIRTHILDNEEDFLGSVGGVTELSRRTEEFRNGVRELRRSFMRVKREVSEPHEAVRLRTXXXXXXXXXXXXXXXXXXXXAALRRLRGQEDALGLDPTGMPKAGAGASGAGDLRELAKAAQSLQELEGMMRDPDVAELEVVARERRYVESYSAAVRRMSADSLGRGLKALNQTDVGGALQVFFNLGCLSARVK 934
+++LG +++D ++ FLE GFD ++A+ I++ G A++ +L ++ ++ ++ + ++++ +D L G+ L + + + L S R+++++ EPH + RT +RL+ Q G +RE+ KAAQSL EL+ +++ D++ ++VV + + + V + L +G+++ NQT V ALQVF+NLGCLS V+
Sbjct: 3 ADLLGHLQNDETYKQFLEEGFDARSYANSIIQ-----------------GRAISE---------------------SLAKLADGVSLLDKELHAQVVEHHDDLLQQATGIETLEGVLQMMQGRINSLMASVGRIQQQIVEPHNKIVSRTAQLRRLQAACDVLRRVIRILYLTKRLQQQLQ-------------------GGVREITKAAQSLCELDYLVQGADLSGIQVVENDMKMIAEAKKEVEIQAQKMLEQGIESQNQTQVATALQVFYNLGCLSVTVE 227
BLAST of mRNA_H-paniculata_contig2923.7973.1 vs. uniprot
Match: A0A7S0XA63_9CHLO (Conserved oligomeric Golgi complex subunit 5 (Fragment) n=2 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0XA63_9CHLO) HSP 1 Score: 70.9 bits (172), Expect = 1.390e-9 Identity = 65/226 (28.76%), Postives = 108/226 (47.79%), Query Frame = 2
Query: 341 IARIEAAIRTHILDNEEDFLGSVGGVTELSRRTEEFRNGVRELRRSFMRVKREVSEPHEAVRLRTXXXXXXXXXXXXXXXXXXXXAALRRLRGQEDALGLDPTG--------------MPKAGAG-----ASGAGDLRELAKAAQSLQELEGMMR--DPDVAELEVVARERRYVESYSAAVRRMSADSLGRGLKALNQTDVGGALQVFFNLGCLSARVKACVTHLA 955
IA ++ A++ + + + L +GGV E R R GV LR + +V+ E+ EPH AV +T + RL+ + LG G P +G+G +GA +LAKAA+ L ++ + R D D+A ++++ R+ R++ +R +A +L G+ A +Q +VG ALQV++NLG L+A V + V+ LA
Sbjct: 58 IAVLDRALKGEVHAHYDQLLAQLGGVGEADRVLAIVRGGVHSLRETMSQVREEMVEPHRAVASKTRQLENLTTTVDTLHRIIRMLKLIARLK---EILGASSGGGGFPLDGGRQLSSTQPISGSGRQVGLTTGAAT-SDLAKAAKMLTDIRELAREGDGDLAGVDIIDRDARWITGAGRDIRARAAAALRAGMDAASQAEVGAALQVYYNLGELTAAVDSQVSALA 279
BLAST of mRNA_H-paniculata_contig2923.7973.1 vs. uniprot
Match: A0A0D2U1R8_CAPO3 (Conserved oligomeric Golgi complex subunit 5 n=4 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2U1R8_CAPO3) HSP 1 Score: 71.2 bits (173), Expect = 4.970e-9 Identity = 77/327 (23.55%), Postives = 127/327 (38.84%), Query Frame = 2
Query: 317 TLDSMSSHIARIEAAIRTHILDNEEDFLGSVGGVTELSRRTEEFRNGVRELRRSFMRVKREVSEPHEAVRLRTXXXXXXXXXXXXXXXXXXXXAALRRLRGQEDALGLDPTGMPKAGAGASGAGDLRELAKAAQSLQELEGMMRDPDVAELEVVARERRYVESYSAAVRRMSADSLGRGLKALNQTDVGGALQVFFNLGCLSARVKACVTHLADQADAAASAALHPAALEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRALSMRAHAGKLAAAIHTTSMEAWGLQRVLEKKRDPTTRALLDSAVR 1297
+L+ ++ I ++ + ++ + D L G+T+L RN + L++ RV+ VSEP++ + T ++LR Q D G ++E+AKAAQ L +L+ ++ D+ ++ V E ++ S AV + L GL+ NQ D+ ALQVF NLG L+ RV+ CV+ L A + +H + RA+ + KL + I +T + LQ+VL K+RDP T ALL +R
Sbjct: 146 SLERLTQTIELLDRQVEHQVISHHSDLLAQAVGITKLEEILAMLRNRIESLQQHIERVRSRVSEPYQFLVQHTDQLEHLQKSCDLLRHVVRFIQLAKKLRIQFD-------------------GGMKEVAKAAQLLNDLDLVLAGEDLRGIDAVDSELAWIGSVRVAVDKEGFLQLSAGLETQNQADIATALQVFHNLGQLAERVETCVSGLHKNVATALKSTVHVDSFASDPSLSSGGSSASLPTSHSSSTLGGLASAVLPGSLKSNTPTAGASPAW--RAI-LWTRLDKLCSTIVSTISQVALLQKVLTKRRDPVTHALLIDVIR 450
BLAST of mRNA_H-paniculata_contig2923.7973.1 vs. uniprot
Match: UPI001B88B26C (conserved oligomeric Golgi complex subunit 5-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88B26C) HSP 1 Score: 69.7 bits (169), Expect = 1.400e-8 Identity = 63/277 (22.74%), Postives = 116/277 (41.88%), Query Frame = 2
Query: 92 EILGRIEDDPVFRGFLEAGFDPAAFASKIVKADVGKTAAHTPVLASPAGDAVATGERVASAPVVSAESVSSQAEITLDSMSSHIARIEAAIRTHILDNEEDFLGSVGGVTELSRRTEEFRNGVRELRRSFMRVKREVSEPHEAVRLRTXXXXXXXXXXXXXXXXXXXXAALRRLRGQEDALGLDPTGMPKAGAGASGAGDLRELAKAAQSLQELEGMMRDPDVAELEVVARERRYVESYSAAVRRMSADSLGRGLKALNQTDVGGALQVFFNLGCLS 922
++L +E+D +FR FLE+ FD A++++ ++ ++S Q L ++ I+ ++ I + I+++ ED L V L + + ++ L + R++ +V++ + ++ RT +RL Q G RE+ KAAQSL EL+ + D++ +EV+ +RR+++ V + L +G++ NQT V +LQVF NLGCLS
Sbjct: 5 DVLAVLENDDIFRQFLESSFDVKAYSNRAIQG----------------------------------LAISEQ----LGKLAEGISLLDKEIHSQIVEHHEDLLSQATSVETLEGVLQMMQTRIQSLLAAMDRIRTKVTDVYNKIQSRTIQLRHLQTTCDLLRRTIRVMYLNKRLHSQLQ-------------------GGAREITKAAQSLNELDYVCEGVDLSGIEVIETDRRFIKQARKEVETQAQKMLEQGMETQNQTQVATSLQVFHNLGCLS 224
BLAST of mRNA_H-paniculata_contig2923.7973.1 vs. uniprot
Match: A0A6P4YFM5_BRABE (Conserved oligomeric Golgi complex subunit 5 n=5 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4YFM5_BRABE) HSP 1 Score: 68.2 bits (165), Expect = 4.200e-8 Identity = 67/288 (23.26%), Postives = 114/288 (39.58%), Query Frame = 2
Query: 95 ILGRIEDDPVFRGFLEAGFDPAAFASKIVKADVGKTAAHTPVLASPAGDAVATGERVASAPVVSAESVSSQAEITLDSMSSHIARIEAAIRTHILDNEEDFLGSVGGVTELSRRTEEFRNGVRELRRSFMRVKREVSEPHEAVRLRTXXXXXXXXXXXXXXXXXXXXAALRRLRGQEDALGLDPTGMPKAGAGASGAGDLRELAKAAQSLQELEGMMRDPDVAELEVVARERRYVESYSAAVRRMSADSLGRGLKALNQTDVGGALQVFFNLGCLSARVKACVTHLAD 958
+L ++E+D VFR FL A FD A+ ++ + ++S Q L ++ I ++ + + ++ ED L G+ L + + + L+ + R++ ++++P + RT RRL+ Q G RE+ KAAQSL EL+ +M+ D+ +E + ++R ++E V + L +G++ NQ V ALQVF NLGCL RV VT D
Sbjct: 11 LLRKLEEDEVFRPFLRAEFDAKTHANDVLHHGI---------------------------------AISQQ----LAKLNEGINLLDRELHSQVVARHEDLLVQATGIESLEGVLQMMQTRITNLQAAVDRIRTKIADPCNKITSRTAQLARLQAACDLLRRIIRILYLSRRLQTQLQ-------------------GGAREITKAAQSLDELDYLMKGADLTGIEAIEQDRLFIERARRDVEEQTRTMLEQGMQTHNQMQVATALQVFHNLGCLWERVDGVVTQRRD 242
BLAST of mRNA_H-paniculata_contig2923.7973.1 vs. uniprot
Match: UPI001CF2C85F (conserved oligomeric Golgi complex subunit 5-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF2C85F) HSP 1 Score: 67.0 bits (162), Expect = 9.530e-8 Identity = 74/306 (24.18%), Postives = 126/306 (41.18%), Query Frame = 2
Query: 107 IEDDPVFRGFLEAGFDPAAFASKIVKADVGKTAAHTPVLASPAGDAVATGERVASAPVVSAESVSSQAEITLDSMSSHIARIEAAIRTHILDNEEDFLGSVGGVTELSRRTEEFRNGVRELRRSFMRVKREVSEPHEAVRLRTXXXXXXXXXXXXXXXXXXXXAALRRLRGQEDALG-------LDPTGMPKAGAGASGAGDLRELAKAAQSLQELEGMMRDPDVAELEVVARERRYVESYSAAVRRMSADSLGRGLKALNQTDVGGALQVFFNLGCLSARVKACVTHLADQADAAASAALHPAAL 1003
+++D F+ FLE FD +A+ I++ G A++ TL ++ I ++ + ++++ ED L G+ L + + + L+ S R+++ + EP+ + RT A LRRL+ D L L + GA RE+ KAAQSL EL+ +++ D++ ++VV + R V V + L +G++ NQT VG ALQVF+NLG L V+ V + + ++ AL P L
Sbjct: 10 LQNDDTFKQFLEEEFDDRVYANNIIQ-----------------GRAISE---------------------TLARLADGINLLDKELHGQVVEHHEDLLQQATGIETLEGVLQMMQTRINSLKASVERIQQHIVEPYFKIMTRT--------------------AQLRRLQEACDILRRVIRVIYLTKRFQTQLQGGA------REITKAAQSLSELDYLVQGADLSGIQVVENDLRVVTKGRREVENQAQKMLAQGMETQNQTQVGTALQVFYNLGALITTVEEVVNKVRNNLTSSVKEALDPTTL 251 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2923.7973.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2923.7973.1 >prot_H-paniculata_contig2923.7973.1 ID=prot_H-paniculata_contig2923.7973.1|Name=mRNA_H-paniculata_contig2923.7973.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=669bp MSTASEILGRIEDDPVFRGFLEAGFDPAAFASKIVKADVGKTAAHTPVLAback to top mRNA from alignment at H-paniculata_contig2923:15213..19016+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2923.7973.1 ID=mRNA_H-paniculata_contig2923.7973.1|Name=mRNA_H-paniculata_contig2923.7973.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3804bp|location=Sequence derived from alignment at H-paniculata_contig2923:15213..19016+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2923:15213..19016+ >mRNA_H-paniculata_contig2923.7973.1 ID=mRNA_H-paniculata_contig2923.7973.1|Name=mRNA_H-paniculata_contig2923.7973.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4014bp|location=Sequence derived from alignment at H-paniculata_contig2923:15213..19016+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |