mRNA_H-paniculata_contig29223.7972.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig29223.7972.1 vs. uniprot
Match: A0A6H5JCX8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX8_9PHAE) HSP 1 Score: 176 bits (445), Expect = 8.960e-49 Identity = 79/145 (54.48%), Postives = 100/145 (68.97%), Query Frame = 1
Query: 1 MQEAGHRGVDATVNRLAAYCVWDGMEANVAEFVGQCLHCLDSRSGSRVPRPLGELLHGTEVGEVFHFDFLHLGTSDPLKEHEVIRG-GCPYLLVLLDDVSGYVWLEPALKCTAKVAAATMLRWCTVFGAPGVFVSDTAHHFKNRL 432
M+EAGHRGV AT++RL YC W M+ +V EFV QCLHC+DS+SG VPRP GE +HG GEV HFD+LH+G S PL + G YLLV++DD+S + W+EP CTA++ A +L WC G P V+VSDTA HFKN +
Sbjct: 424 MKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSV 568
BLAST of mRNA_H-paniculata_contig29223.7972.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE) HSP 1 Score: 177 bits (449), Expect = 9.270e-49 Identity = 79/145 (54.48%), Postives = 104/145 (71.72%), Query Frame = 1
Query: 1 MQEAGHRGVDATVNRLAAYCVWDGMEANVAEFVGQCLHCLDSRSGSRVPRPLGELLHGTEVGEVFHFDFLHLGTSDPLKEHEVIRG-GCPYLLVLLDDVSGYVWLEPALKCTAKVAAATMLRWCTVFGAPGVFVSDTAHHFKNRL 432
M+EAGHRG AT+ RL+ YC W ME +V +FV QCLHC+DS++G +VPRPLGE +HGT GEV HFD+L++G S PL + + G Y+LV++DD+S +VWLEP CTA + A +L WC + G P V+VSDTA HFKN +
Sbjct: 1302 MKEAGHRGAVATLQRLSEYCCWFRMEEHVTDFVKQCLHCMDSKAGEKVPRPLGETVHGTRPGEVVHFDYLYVGASGPLGDDGLDEEEGFKYILVMMDDMSNWVWLEPTGACTACLTAQHLLTWCKILGVPEVWVSDTASHFKNHM 1446
BLAST of mRNA_H-paniculata_contig29223.7972.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE) HSP 1 Score: 176 bits (445), Expect = 3.200e-48 Identity = 79/145 (54.48%), Postives = 100/145 (68.97%), Query Frame = 1
Query: 1 MQEAGHRGVDATVNRLAAYCVWDGMEANVAEFVGQCLHCLDSRSGSRVPRPLGELLHGTEVGEVFHFDFLHLGTSDPLKEHEVIRG-GCPYLLVLLDDVSGYVWLEPALKCTAKVAAATMLRWCTVFGAPGVFVSDTAHHFKNRL 432
M+EAGHRGV AT++RL YC W M+ +V EFV QCLHC+DS+SG VPRP GE +HG GEV HFD+LH+G S PL + G YLLV++DD+S + W+EP CTA++ A +L WC G P V+VSDTA HFKN +
Sbjct: 1200 MKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSV 1344
BLAST of mRNA_H-paniculata_contig29223.7972.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE) HSP 1 Score: 142 bits (359), Expect = 5.180e-38 Identity = 64/121 (52.89%), Postives = 82/121 (67.77%), Query Frame = 1
Query: 73 MEANVAEFVGQCLHCLDSRSGSRVPRPLGELLHGTEVGEVFHFDFLHLGTSDPLKEHEVIRG-GCPYLLVLLDDVSGYVWLEPALKCTAKVAAATMLRWCTVFGAPGVFVSDTAHHFKNRL 432
M+ +V EFV QCLHC+DS+SG VPRP GE +HG GEV HFD+LH+G S PL + G YLLV++DD+S + W+EP CTA++ A +L WC G P V+VSDTA HFKN +
Sbjct: 1 MDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSV 121
BLAST of mRNA_H-paniculata_contig29223.7972.1 vs. uniprot
Match: A0A6H5J9M0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9M0_9PHAE) HSP 1 Score: 122 bits (305), Expect = 3.500e-33 Identity = 56/114 (49.12%), Postives = 78/114 (68.42%), Query Frame = 1
Query: 73 MEANVAEFVGQCLHCLDSRSGSRVPRPLGELLHGTEVGEVFHFDFLHLGTSDPL-KEHEVIRGGCPYLLVLLDDVSGYVWLEPALKCTAKVAAATMLRWCTVFGAPGVFVSDTA 411
ME +V +FV CL+C+DS++G +VP+PLGE HGT GEV FD+L++G S L K+ G Y+LV++DD+S +VWLEP CTA++ + +L WC G P V+VSDTA
Sbjct: 1 MEEHVTDFVKHCLNCMDSKAGEKVPQPLGETAHGTRPGEVVLFDYLYVGASGLLGKDSLDEEDGFKYILVMMDDMSNWVWLEPTGACTARLTSQHLLTWCKTLGVPEVWVSDTA 114
BLAST of mRNA_H-paniculata_contig29223.7972.1 vs. uniprot
Match: R7Q542_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q542_CHOCR) HSP 1 Score: 114 bits (284), Expect = 1.410e-26 Identity = 58/140 (41.43%), Postives = 75/140 (53.57%), Query Frame = 1
Query: 13 GHRGVDATVNRLAAYCVWDGMEANVAEFVGQCLHCLDSRSGSRVPRPLGELLHGTEVGEVFHFDFLHLGTSDPLKEHEVIRGGCPYLLVLLDDVSGYVWLEPALKCTAKVAAATMLRWCTVFGAPGVFVSDTAHHFKNRL 432
GHRG+DAT + + W ++ +V V C HC+ +R+G VPRPLG +HG EV H DFL++G K+ YLL+L DD+S Y+WL P TA AA + W VFG VSD HFKN L
Sbjct: 299 GHRGMDATGSVIRENFWWSSLDQDVKALVRGCYHCIVTRTGEVVPRPLGHAIHGDRPNEVVHMDFLYMGQGLSNKK---------YLLILRDDLSSYIWLWPTEDTTAASAAEALCVWIGVFGCMEWMVSDQGSHFKNSL 429
BLAST of mRNA_H-paniculata_contig29223.7972.1 vs. uniprot
Match: A0A6A4ZJ35_9STRA (Uncharacterized protein (Fragment) n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZJ35_9STRA) HSP 1 Score: 105 bits (263), Expect = 9.900e-24 Identity = 58/141 (41.13%), Postives = 79/141 (56.03%), Query Frame = 1
Query: 10 AGHRGVDATVNRLAAYCVWDGMEANVAEFVGQCLHCLDSRSGSRVPRPLGELLHGTEVGEVFHFDFLHLGTSDPLKEHEVIRGGCPYLLVLLDDVSGYVWLEPALKCTAKVAAATMLRWCTVFGAPGVFVSDTAHHFKNRL 432
AGHR V+AT +A W ++A+V FV CLHC+ G VPRP GE LH T+ E+ HFD++ S P E GG ++LV+ DD+SG+V L + TA A+ ++ W +FG +VSD HFKN L
Sbjct: 888 AGHRRVEATTASVADMFDWPTLKADVKNFVRACLHCMVV-DGESVPRPWGEALHATKPNELIHFDWV----SFPEAE-----GGLKHVLVIKDDMSGFVRLHASASATAVETASALMEWFGLFGVVKTWVSDCGSHFKNEL 1018
BLAST of mRNA_H-paniculata_contig29223.7972.1 vs. uniprot
Match: UPI001E1DBC25 (uncharacterized protein LOC123544734 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DBC25) HSP 1 Score: 104 bits (260), Expect = 1.070e-23 Identity = 49/129 (37.98%), Postives = 68/129 (52.71%), Query Frame = 1
Query: 46 LAAYCVWDGMEANVAEFVGQCLHCLDSRSGSRVPRPLGELLHGTEVGEVFHFDFLHLGTSDPLKEHEVIRGGCPYLLVLLDDVSGYVWLEPALKCTAKVAAATMLRWCTVFGAPGVFVSDTAHHFKNRL 432
+ A WD + +V F CLHC + G R PRPLG+ LH + EV HFD+L++G S G YLL++ DD+SGY+WL PA + + W FG ++VSD HFKN++
Sbjct: 7 IEAVFYWDTLREDVLTFCNTCLHCRSTVGGHRTPRPLGQALHASLPNEVIHFDYLYMGPSGV---------GYKYLLLIKDDLSGYLWLVPAKAADSASTVDALTLWFATFGVAHIWVSDQGSHFKNQV 126
BLAST of mRNA_H-paniculata_contig29223.7972.1 vs. uniprot
Match: A0A2P4WZY3_9STRA (RNA-directed DNA polymerase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WZY3_9STRA) HSP 1 Score: 105 bits (261), Expect = 1.890e-23 Identity = 55/143 (38.46%), Postives = 77/143 (53.85%), Query Frame = 1
Query: 4 QEAGHRGVDATVNRLAAYCVWDGMEANVAEFVGQCLHCLDSRSGSRVPRPLGELLHGTEVGEVFHFDFLHLGTSDPLKEHEVIRGGCPYLLVLLDDVSGYVWLEPALKCTAKVAAATMLRWCTVFGAPGVFVSDTAHHFKNRL 432
+ +GHRG T + ++C W + +VA+FV C+HC+ +R G RVPRP G LH T+ EV HFD+L L + Y+LVL D++SGYV L P A A ++L W +G +VSD HFKN +
Sbjct: 1164 RHSGHRGERTTAAAVGSWCWWPDLAKDVAQFVRSCIHCVATRDG-RVPRPYGPALHATKPNEVLHFDYLTLPEDEDTHNK--------YVLVLKDNLSGYVELFPTAGPDAASCAVSLLSWFHRYGIVKRWVSDQGTHFKNEV 1297
BLAST of mRNA_H-paniculata_contig29223.7972.1 vs. uniprot
Match: A0A6A3GSN5_9STRA (Integrase catalytic domain-containing protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GSN5_9STRA) HSP 1 Score: 103 bits (258), Expect = 2.020e-23 Identity = 53/141 (37.59%), Postives = 76/141 (53.90%), Query Frame = 1
Query: 10 AGHRGVDATVNRLAAYCVWDGMEANVAEFVGQCLHCLDSRSGSRVPRPLGELLHGTEVGEVFHFDFLHLGTSDPLKEHEVIRGGCPYLLVLLDDVSGYVWLEPALKCTAKVAAATMLRWCTVFGAPGVFVSDTAHHFKNRL 432
AGHRG T L W + +VA FV +C+HC+ + +G ++PRPLGE L T+ E HFDFL + GG Y+LVL D++SGYV L ++ T+ ++L W FG +VSD HF+N++
Sbjct: 248 AGHRGAKTTAKALEDLFSWRSLRKDVAVFVSECMHCMATATG-KIPRPLGETLRATKPNEQLHFDFLSMAEG---------AGGLKYVLVLKDNMSGYVELVACVQATSDEVYQSLLDWFKRFGVVRQWVSDQGAHFRNQV 378 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29223.7972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig29223.7972.1 >prot_H-paniculata_contig29223.7972.1 ID=prot_H-paniculata_contig29223.7972.1|Name=mRNA_H-paniculata_contig29223.7972.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=144bp MQEAGHRGVDATVNRLAAYCVWDGMEANVAEFVGQCLHCLDSRSGSRVPRback to top mRNA from alignment at H-paniculata_contig29223:2632..3063+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig29223.7972.1 ID=mRNA_H-paniculata_contig29223.7972.1|Name=mRNA_H-paniculata_contig29223.7972.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=432bp|location=Sequence derived from alignment at H-paniculata_contig29223:2632..3063+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig29223:2632..3063+ >mRNA_H-paniculata_contig29223.7972.1 ID=mRNA_H-paniculata_contig29223.7972.1|Name=mRNA_H-paniculata_contig29223.7972.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=864bp|location=Sequence derived from alignment at H-paniculata_contig29223:2632..3063+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |