mRNA_H-paniculata_contig29219.7969.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig29219.7969.1
Unique NamemRNA_H-paniculata_contig29219.7969.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig29219.7969.1 vs. uniprot
Match: W7TIQ5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIQ5_9STRA)

HSP 1 Score: 174 bits (442), Expect = 2.780e-47
Identity = 104/259 (40.15%), Postives = 144/259 (55.60%), Query Frame = 1
Query:    4 KLLHERLGHVR--------DLHTVAQPQDIKLRGKLGICSTCERREASKKPVNKYWEEQTTERLELVHTDIAGPVDERSEGSC-FAIFFVDDYSRMRKVYALRHKSEALWTLKQFERDIAKATGLQ----IKNLRSDQGAEFTGESFRQFCAENGIKQEFSDTYTPQRNGVAERSWRSVFEMTQSKMITVNMGHRHRAEAARAAVYCLNRAPTRPHNGG-IPYEKWHGTTPKLDRLRVFGCTAYVMFQSQQRCKFEDKA 738
            +L H+R GH+         ++     P+ IK   K G+C TCER + +K+       E+  E LELVHTD+ GPV+  S G   +AI F DDY+R R VY ++HKSE+L  LK++ +D+  +        ++ LRSD G E+TG  F+ FC  +GI+Q+F   Y PQ NGVAE+SW  +  M +S  I   +G R  AEA   A Y LNR+ T     G  PY K  G    +   R FGC A+V   S +R KF+D+A
Sbjct:   22 ELWHQRFGHMNYEYLRQMGEIDGTGVPKGIK---KPGVCGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMNISFRDHKVNTLRGLRSDNGGEYTGIDFKNFCKNHGIRQDFGIPYGPQDNGVAEKSWHVLSNMARSLRIQAGLGKRFWAEALNTAAYILNRSRTSALGPGETPYYKMFGKHTSVKHFRTFGCKAFVHDTSVRRGKFDDRA 277          
BLAST of mRNA_H-paniculata_contig29219.7969.1 vs. uniprot
Match: A0A2Z6P4L8_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6P4L8_TRISU)

HSP 1 Score: 177 bits (450), Expect = 3.080e-47
Identity = 99/251 (39.44%), Postives = 142/251 (56.57%), Query Frame = 1
Query:    7 LLHERLGHV--RDLHTVAQPQDIKLRGKLGI----CSTCERREASKKPVNKYWEEQTTERLELVHTDIAGPVDERSEGSC-FAIFFVDDYSRMRKVYALRHKSEALWTLKQFERDIAKATGLQIKNLRSDQGAEFTGESFRQFCAENGIKQEFSDTYTPQRNGVAERSWRSVFEMTQSKMITVNMGHRHRAEAARAAVYCLNRAPTRPHNGGIPYEKWHGTTPKLDRLRVFGCTAYVMFQSQQRCKFEDKA 738
            L H R GH+  + L T+     ++      +    C+ C + +  +  +++    + +E+LELVH DI GP+   SEG+  + I F+DDYSR   VY L +KS+A  T K F+  + K TGL IK LR+D+G EFT   F+++C  NGIK++ +  YTPQ+NGVAER  R+V  M +S ++  N+  +   EA   A Y LNR PT       P E W+G  P +  LRVFGC AY      +R K EDK+
Sbjct:  432 LWHRRFGHLSYKGLKTLQTKNMVRGLPSFSVGEIVCTNCLKGKQHRDVISRRSTWRASEKLELVHADICGPISPFSEGNKRYFICFIDDYSRKAWVYFLAYKSDAFTTFKLFKALVEKETGLSIKCLRTDRGGEFTSNEFKEYCKMNGIKRQLTVAYTPQQNGVAERKNRTVMNMVRSLLVEKNVPRKFWVEAVNWAFYVLNRCPTSSVKEMTPVEAWYGMKPSVGHLRVFGCIAYAHVPDARRTKLEDKS 682          
BLAST of mRNA_H-paniculata_contig29219.7969.1 vs. uniprot
Match: A0A151T355_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T355_CAJCA)

HSP 1 Score: 176 bits (446), Expect = 9.970e-47
Identity = 93/251 (37.05%), Postives = 141/251 (56.18%), Query Frame = 1
Query:    7 LLHERLGHVR--DLHTVAQPQDIK----LRGKLGICSTCERREASKKPVNKYWEEQTTERLELVHTDIAGPVDERS-EGSCFAIFFVDDYSRMRKVYALRHKSEALWTLKQFERDIAKATGLQIKNLRSDQGAEFTGESFRQFCAENGIKQEFSDTYTPQRNGVAERSWRSVFEMTQSKMITVNMGHRHRAEAARAAVYCLNRAPTRPHNGGIPYEKWHGTTPKLDRLRVFGCTAYVMFQSQQRCKFEDKA 738
            L H+RLGH     L  ++    +K    ++    +C  C+  +  K P  K    + TE+L+LVHTD+ GP+   S  GS + + F+DDY+RM  V+ L+ KS+      +F+  +   TGLQ+K LRSD G E+T   F++FC + GI+ + +  YTPQ+NGV+ER  R+V EM +  +    +     AEA   +VY LN  PT+   G  P+E WHG TP ++ L+VFGC  Y +    +R K + K+
Sbjct:  395 LWHKRLGHFSYSTLKRMSSNDLVKNLPAIQDNANLCDVCQYGKQRKLPFPKEASWRATEKLQLVHTDVCGPMSTTSLNGSKYFLLFIDDYTRMSWVFFLKKKSDVFANFLKFKFMVENETGLQVKRLRSDNGTEYTAGEFKKFCEQVGIQHQLTVPYTPQQNGVSERKNRTVMEMARCLLFEKGLPKTFWAEAVNTSVYLLNLLPTKALKGNTPFEAWHGRTPSVEHLKVFGCVCYALVPEVKRDKLDQKS 645          
BLAST of mRNA_H-paniculata_contig29219.7969.1 vs. uniprot
Match: W7TGQ6_9STRA (Retrotransposon unclassified n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGQ6_9STRA)

HSP 1 Score: 167 bits (422), Expect = 1.320e-46
Identity = 100/259 (38.61%), Postives = 142/259 (54.83%), Query Frame = 1
Query:    4 KLLHERLGHVR--------DLHTVAQPQDIKLRGKLGICSTCERREASKKPVNKYWEEQTTERLELVHTDIAGPVDERSEGSC-FAIFFVDDYSRMRKVYALRHKSEALWTLKQFERDIAKATGLQ----IKNLRSDQGAEFTGESFRQFCAENGIKQEFSDTYTPQRNGVAERSWRSVFEMTQSKMITVNMGHRHRAEAARAAVYCLNRAPTRPHNGG-IPYEKWHGTTPKLDRLRVFGCTAYVMFQSQQRCKFEDKA 738
            +L H+R GH+         ++     P+ IK   K G+C TCER + +K+       E+  E LELVHTD+ GPV+  S G   +AI F DDY+R R VY ++HKSE+L  LK++ +D+  +        ++ LRSD G E+TG  F+ FC  +GI+Q+F   Y PQ NG+AE+SW  +  M ++  I   +G    AEA   A Y  NR+       G  PY K  G    +  LR FGC A+V   S +R KF+D+A
Sbjct:   22 ELWHQRFGHMNYEYLRQMGEIDGTGVPKGIK---KPGVCGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMNISFRDHKVNTLRGLRSDNGGEYTGIDFKNFCKNHGIRQDFGMPYGPQDNGLAEKSWHILCNMARALRIQAGLGKGFWAEALNTAAYIWNRSRNSALGPGETPYYKMFGKHASVKHLRTFGCKAFVHDTSVRRGKFDDRA 277          
BLAST of mRNA_H-paniculata_contig29219.7969.1 vs. uniprot
Match: A0A2K3KY79_TRIPR (Copia-type polyprotein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3KY79_TRIPR)

HSP 1 Score: 175 bits (444), Expect = 1.690e-46
Identity = 100/252 (39.68%), Postives = 142/252 (56.35%), Query Frame = 1
Query:    7 LLHERLGHV-----RDLHTVAQPQDIKL--RGKLGICSTCERREASKKPVNKYWEEQTTERLELVHTDIAGPVDERSEGSC-FAIFFVDDYSRMRKVYALRHKSEALWTLKQFERDIAKATGLQIKNLRSDQGAEFTGESFRQFCAENGIKQEFSDTYTPQRNGVAERSWRSVFEMTQSKMITVNMGHRHRAEAARAAVYCLNRAPTRPHNGGIPYEKWHGTTPKLDRLRVFGCTAYVMFQSQQRCKFEDKA 738
            L H R GH+     + L T    + +     G++ +C  C + +  +  +++    + +E+LELVH DI GP+   SEG+  + I F+DDYSR   VY L +KS+A  T K F+  + K T L IK LR+D+G EFT   F+++C  NGIK++ +  YTPQ+NGVAER  R+V  M +S ++  N+  +  AEA   A Y LNR PT       P E W G  P +  LRVFGC AY      +R K EDK+
Sbjct:  128 LWHRRFGHLSYKGLKTLQTKGMVRGLPCFSEGEI-VCKNCLKGKQHRDVISRRSTWRASEKLELVHADICGPISPFSEGNKRYFICFIDDYSRKAWVYFLAYKSDAFTTFKLFKALVEKETDLSIKCLRTDRGGEFTSNEFKEYCKMNGIKRQLTAAYTPQQNGVAERKNRTVMNMVRSLLVEKNVPRKFWAEAVNWAFYVLNRCPTSSVKEMTPVEAWCGVKPSVGHLRVFGCIAYAHVPDARRTKLEDKS 378          
BLAST of mRNA_H-paniculata_contig29219.7969.1 vs. uniprot
Match: A0A1J3CMV3_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3CMV3_NOCCA)

HSP 1 Score: 162 bits (410), Expect = 1.390e-44
Identity = 87/252 (34.52%), Postives = 138/252 (54.76%), Query Frame = 1
Query:    4 KLLHERLGHV--RDLHTVAQPQDI----KLRGKLGICSTCERREASKKPVNKYWEEQTTERLELVHTDIAGPVDERSEGSC-FAIFFVDDYSRMRKVYALRHKSEALWTLKQFERDIAKATGLQIKNLRSDQGAEFTGESFRQFCAENGIKQEFSDTYTPQRNGVAERSWRSVFEMTQSKMITVNMGHRHRAEAARAAVYCLNRAPTRPHNGGIPYEKWHGTTPKLDRLRVFGCTAYVMFQSQQRCKFEDKA 738
            +L H R GH+  + L+T+   + +    ++     +C  C R +  + P  K  + + TERLEL+H+D+ GP+   S     + I F+DD+SR   +Y +  KSEA    K F+  + K TGL IK LR+D+G E+    F+ FC E+GIK++ +  +TPQ+NGVAER  R++  M ++ ++   +      +A +   + LNR+PT       P E W G  P ++  RVFGC  YV     +R K +DK+
Sbjct:   58 ELWHHRYGHLSYKGLNTLCSKEMVVGLPEIEDVKTVCDACVRGKHHRVPFPKQSKWRATERLELIHSDLCGPISPSSNSQIRYLISFIDDFSRKTWIYFVGEKSEAFDRFKTFKAFVEKQTGLLIKGLRTDRGGEYNSNEFKGFCREHGIKRQLTTAFTPQQNGVAERKNRTIMNMVRAALLEKEVPKSFWPDAVQWVNHILNRSPTLVVKDKTPEEAWSGKKPSVEHFRVFGCVGYVHIPDAKRSKLDDKS 309          
BLAST of mRNA_H-paniculata_contig29219.7969.1 vs. uniprot
Match: A0A251SFG3_HELAN (Putative ribonuclease H-like domain-containing protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251SFG3_HELAN)

HSP 1 Score: 170 bits (430), Expect = 1.440e-44
Identity = 97/251 (38.65%), Postives = 143/251 (56.97%), Query Frame = 1
Query:    4 KLLHERLGHVR-DLHTVAQPQDI-----KLRGKLGICSTCERREASKKPVNKYWEEQTTERLELVHTDIAGPVDERSEGSC-FAIFFVDDYSRMRKVYALRHKSEALWTLKQFERDIAKATGLQIKNLRSDQGAEFTGESFRQFCAENGIKQEFSDTYTPQRNGVAERSWRSVFEMTQSKMITVNMGHRHRAEAARAAVYCLNRAPTRPHNGGIPYEKWHGTTPKLDRLRVFGCTAYVMFQSQQRCKFEDK 735
            +L H R GHV  D     + +D+     K+R     C  C   + ++KP +K    Q TE L+LVH+DI GP+   S G C + I F+DDY+R   VY L+ KSEAL+  K F     K +   IK LR+D+G E+  ++F+++   NGI+ + +++YTPQ+NGVAER  R++ E+++S M    + + + AEA     Y LNR  T+      PYE W+G  P ++ LRVFGC AY +   Q R K  +K
Sbjct:  690 RLWHRRYGHVNMDTLIDMKNKDLVIGLPKIRKDDSTCEGCISGKHARKPFHKKMVWQATEPLQLVHSDICGPMRTESIGGCRYFITFIDDYTRKTWVYFLKFKSEALYHFKNFRVLNEKQSNHVIKTLRTDRGGEYCSKAFQEYLRLNGIRHQLTNSYTPQQNGVAERKNRTLMELSRSMMNIKQLPNCYWAEAVACTTYILNRTITKTRPNITPYEAWNGQKPNVEHLRVFGCLAYALIPKQHRDKLSNK 940          
BLAST of mRNA_H-paniculata_contig29219.7969.1 vs. uniprot
Match: W7T174_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T174_9STRA)

HSP 1 Score: 169 bits (429), Expect = 1.750e-44
Identity = 100/259 (38.61%), Postives = 142/259 (54.83%), Query Frame = 1
Query:    4 KLLHERLGHVR--------DLHTVAQPQDIKLRGKLGICSTCERREASKKPVNKYWEEQTTERLELVHTDIAGPVDERSEGSC-FAIFFVDDYSRMRKVYALRHKSEALWTLKQFERDIAKATGLQ----IKNLRSDQGAEFTGESFRQFCAENGIKQEFSDTYTPQRNGVAERSWRSVFEMTQSKMITVNMGHRHRAEAARAAVYCLNRAPTRPHNGG-IPYEKWHGTTPKLDRLRVFGCTAYVMFQSQQRCKFEDKA 738
            +L H+R GH+         ++     P+ IK   K G+C TCER + +KK       E+  E LELVHTD+ GPV+  S G   +AI F DDY+R R VY ++HKSE+L  LK++ +D+  +        ++ LRSD G E+TG  F+ FC  +GI+Q+F   Y PQ NG+AE+SW  +  M ++  I   +G    AEA   A Y  NR+       G  PY K  G    ++  R FGC A+V   S +R KF+D+A
Sbjct:   68 ELWHQRFGHINYEYLKQMGEIDDTGVPKGIK---KPGVCGTCERAKQTKKSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMNISFRDHKVNTLRGLRSDNGGEYTGVDFKNFCKNHGIRQDFGMPYGPQDNGLAEKSWHILCNMARALRIQAGLGKGFWAEALNTATYIWNRSRNSTLGAGETPYYKMFGKHASVNHFRTFGCKAFVHDTSVRRGKFDDRA 323          
BLAST of mRNA_H-paniculata_contig29219.7969.1 vs. uniprot
Match: A0A251T2S6_HELAN (Putative zinc finger, CCHC-type n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251T2S6_HELAN)

HSP 1 Score: 169 bits (427), Expect = 3.390e-44
Identity = 96/250 (38.40%), Postives = 141/250 (56.40%), Query Frame = 1
Query:    7 LLHERLGHVR--DLHTVAQPQDI----KLRGKLGICSTCERREASKKPVNKYWEEQTTERLELVHTDIAGPVDERSEGSC-FAIFFVDDYSRMRKVYALRHKSEALWTLKQFERDIAKATGLQIKNLRSDQGAEFTGESFRQFCAENGIKQEFSDTYTPQRNGVAERSWRSVFEMTQSKMITVNMGHRHRAEAARAAVYCLNRAPTRPHNGGIPYEKWHGTTPKLDRLRVFGCTAYVMFQSQQRCKFEDK 735
            L H R GHV    LH +   + +    K+     IC  C   + ++KP +K    + +E L+L+H+DI GP+  +S G C + I F+DD+SR   VY L+ KS+AL   + F+R      G +IK++R+D+G E+ G  F+ F  ENGI  + + +YTPQ+NGVAER  R++ E+++S M    + + + AEA   A Y LNR  T+      P E W G  P +D LR+FGC AYV    Q R K + K
Sbjct:  356 LWHRRYGHVNFETLHDMGMNETVSGLPKIDKSSHICEGCIFGKHARKPFSKKAVWRASEPLQLIHSDICGPMKTQSIGGCRYFITFIDDFSRKTWVYFLKFKSQALSYFRNFKRLAENQIGYKIKSMRTDRGGEYCGHEFQNFLKENGIHHQLTTSYTPQQNGVAERKNRTLMELSRSMMKMKELPNMYWAEAVSCATYLLNRTITKSVPELTPQEVWSGRKPNVDHLRIFGCIAYVHIPKQNRTKLDVK 605          
BLAST of mRNA_H-paniculata_contig29219.7969.1 vs. uniprot
Match: A0A8J5YEG9_9ROSI (Integrase catalytic domain-containing protein n=6 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YEG9_9ROSI)

HSP 1 Score: 168 bits (426), Expect = 4.780e-44
Identity = 94/253 (37.15%), Postives = 140/253 (55.34%), Query Frame = 1
Query:    7 LLHERLGHV--RDLHTVAQPQDIKLRGKL----GICSTCERREASKKP--VNKYWEEQTTERLELVHTDIAGPVDERS-EGSCFAIFFVDDYSRMRKVYALRHKSEALWTLKQFERDIAKATGLQIKNLRSDQGAEFTGESFRQFCAENGIKQEFSDTYTPQRNGVAERSWRSVFEMTQSKMITVNMGHRHRAEAARAAVYCLNRAPTRPHNGGIPYEKWHGTTPKLDRLRVFGCTAYVMFQSQQRCKFEDKA 738
            L H R GHV  R L  + +   ++   K+     +C  C+  + S+ P  VN+ W  +  ERLELVH+DI GP+   S   S + + F+DD +R   VY ++HKSE L    +F+  +   TG +IK LR+D GAE+  E F++ C   GI  + +  YTPQ+NGV ER  R+V  MT+  +    +  R  AEA   +VY LN+ PTR      P+E W+G  P +  L+VFGC  Y +  +++R K E ++
Sbjct:  454 LWHRRFGHVNFRSLDMLQKQNLVENMSKVEASDSVCDVCQFGKQSRLPFPVNQAW--RARERLELVHSDICGPMKSSSLNDSKYFVLFIDDLTRFCWVYFMKHKSEVLEAFSKFKALVENQTGCKIKALRTDNGAEYLSERFQKLCELAGIHHQLTTVYTPQQNGVCERKNRTVMNMTRCLLFQSKLPSRFWAEAVNTSVYLLNKLPTRAVKDKTPFEAWYGLKPSVSHLKVFGCMCYALIPAERRTKLERRS 704          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29219.7969.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7TIQ5_9STRA2.780e-4740.15Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
A0A2Z6P4L8_TRISU3.080e-4739.44Uncharacterized protein n=1 Tax=Trifolium subterra... [more]
A0A151T355_CAJCA9.970e-4737.05Retrovirus-related Pol polyprotein from transposon... [more]
W7TGQ6_9STRA1.320e-4638.61Retrotransposon unclassified n=1 Tax=Nannochlorops... [more]
A0A2K3KY79_TRIPR1.690e-4639.68Copia-type polyprotein (Fragment) n=1 Tax=Trifoliu... [more]
A0A1J3CMV3_NOCCA1.390e-4434.52Retrovirus-related Pol polyprotein from transposon... [more]
A0A251SFG3_HELAN1.440e-4438.65Putative ribonuclease H-like domain-containing pro... [more]
W7T174_9STRA1.750e-4438.61Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
A0A251T2S6_HELAN3.390e-4438.40Putative zinc finger, CCHC-type n=1 Tax=Helianthus... [more]
A0A8J5YEG9_9ROSI4.780e-4437.15Integrase catalytic domain-containing protein n=6 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig29219contigH-paniculata_contig29219:219..959 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score167.2
Seed ortholog evalue9.9e-39
Seed eggNOG ortholog400682.PAC_15703055
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3ACW4@33154,3BVPH@33208,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons1
Model size741
Cds size741
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929893.9711764-CDS-H-paniculata_contig29219:218..9591622929893.9711764-CDS-H-paniculata_contig29219:218..959Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29219 219..959 +
1691481058.7731147-CDS-H-paniculata_contig29219:218..9591691481058.7731147-CDS-H-paniculata_contig29219:218..959Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29219 219..959 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig29219.7969.1prot_H-paniculata_contig29219.7969.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig29219 219..959 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig29219.7969.1

>prot_H-paniculata_contig29219.7969.1 ID=prot_H-paniculata_contig29219.7969.1|Name=mRNA_H-paniculata_contig29219.7969.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=247bp
IKLLHERLGHVRDLHTVAQPQDIKLRGKLGICSTCERREASKKPVNKYWE
EQTTERLELVHTDIAGPVDERSEGSCFAIFFVDDYSRMRKVYALRHKSEA
LWTLKQFERDIAKATGLQIKNLRSDQGAEFTGESFRQFCAENGIKQEFSD
TYTPQRNGVAERSWRSVFEMTQSKMITVNMGHRHRAEAARAAVYCLNRAP
TRPHNGGIPYEKWHGTTPKLDRLRVFGCTAYVMFQSQQRCKFEDKA*
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mRNA from alignment at H-paniculata_contig29219:219..959+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig29219.7969.1 ID=mRNA_H-paniculata_contig29219.7969.1|Name=mRNA_H-paniculata_contig29219.7969.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=741bp|location=Sequence derived from alignment at H-paniculata_contig29219:219..959+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCAAGCTGCTTCACGAGCGACTAGGGCACGTGCGCGATCTACACACCGT CGCGCAGCCGCAAGACATCAAGCTGCGCGGGAAGCTTGGCATCTGTTCAA CGTGTGAGCGAAGGGAGGCATCGAAGAAACCAGTAAATAAGTATTGGGAA GAGCAGACAACGGAGCGGCTGGAGCTAGTGCATACTGACATCGCAGGACC TGTAGACGAACGTTCCGAGGGAAGTTGTTTCGCCATTTTCTTCGTGGACG ACTACAGTCGGATGCGCAAGGTCTACGCCCTGAGACATAAATCAGAGGCG TTATGGACTCTGAAACAGTTCGAGCGGGACATCGCGAAGGCAACCGGGCT ACAAATAAAGAATCTTCGGTCAGATCAAGGAGCGGAGTTTACAGGAGAAT CGTTCCGACAGTTTTGTGCGGAAAATGGCATCAAGCAAGAATTTTCTGAC ACCTACACGCCGCAGCGAAATGGTGTGGCGGAGCGCAGCTGGCGTAGCGT TTTCGAGATGACCCAAAGTAAGATGATCACAGTCAACATGGGCCACAGGC ATCGGGCGGAGGCGGCACGCGCGGCTGTGTACTGCTTAAATCGCGCCCCG ACGCGACCTCACAACGGAGGGATACCGTATGAGAAATGGCACGGCACGAC ACCAAAGCTTGACCGCCTTCGTGTCTTCGGCTGCACGGCGTACGTGATGT TCCAGTCGCAGCAGAGATGCAAATTCGAGGACAAAGCATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig29219:219..959+

>mRNA_H-paniculata_contig29219.7969.1 ID=mRNA_H-paniculata_contig29219.7969.1|Name=mRNA_H-paniculata_contig29219.7969.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1482bp|location=Sequence derived from alignment at H-paniculata_contig29219:219..959+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCAAGCTGCTTCACGAGCGACTAGGGCACGTGCGCGATCTACACACCGT
CGCGCAGCCGCAAGACATCAAGCTGCGCGGGAAGCTTGGCATCTGTTCAA
CGTGTGAGCGAAGGGAGGCATCGAAGAAACCAGTAAATAAGTATTGGGAA
GAGCAGACAACGGAGCGGCTGGAGCTAGTGCATACTGACATCGCAGGACC
TGTAGACGAACGTTCCGAGGGAAGTTGTTTCGCCATTTTCTTCGTGGACG
ACTACAGTCGGATGCGCAAGGTCTACGCCCTGAGACATAAATCAGAGGCG
TTATGGACTCTGAAACAGTTCGAGCGGGACATCGCGAAGGCAACCGGGCT
ACAAATAAAGAATCTTCGGTCAGATCAAGGAGCGGAGTTTACAGGAGAAT
CGTTCCGACAGTTTTGTGCGGAAAATGGCATCAAGCAAGAATTTTCTGAC
ACCTACACGCCGCAGCGAAATGGTGTGGCGGAGCGCAGCTGGCGTAGCGT
TTTCGAGATGACCCAAAGTAAGATGATCACAGTCAACATGGGCCACAGGC
ATCGGGCGGAGGCGGCACGCGCGGCTGTGTACTGCTTAAATCGCGCCCCG
ACGCGACCTCACAACGGAGGGATACCGTATGAGAAATGGCACGGCACGAC
ACCAAAGCTTGACCGCCTTCGTGTCTTCGGCTGCACGGCGTACGTGATGT
TCCAGTCGCAGCAGAGATGCAAATTCGAGGACAAAGCATGAATCAAGCTG
CTTCACGAGCGACTAGGGCACGTGCGCGATCTACACACCGTCGCGCAGCC
GCAAGACATCAAGCTGCGCGGGAAGCTTGGCATCTGTTCAACGTGTGAGC
GAAGGGAGGCATCGAAGAAACCAGTAAATAAGTATTGGGAAGAGCAGACA
ACGGAGCGGCTGGAGCTAGTGCATACTGACATCGCAGGACCTGTAGACGA
ACGTTCCGAGGGAAGTTGTTTCGCCATTTTCTTCGTGGACGACTACAGTC
GGATGCGCAAGGTCTACGCCCTGAGACATAAATCAGAGGCGTTATGGACT
CTGAAACAGTTCGAGCGGGACATCGCGAAGGCAACCGGGCTACAAATAAA
GAATCTTCGGTCAGATCAAGGAGCGGAGTTTACAGGAGAATCGTTCCGAC
AGTTTTGTGCGGAAAATGGCATCAAGCAAGAATTTTCTGACACCTACACG
CCGCAGCGAAATGGTGTGGCGGAGCGCAGCTGGCGTAGCGTTTTCGAGAT
GACCCAAAGTAAGATGATCACAGTCAACATGGGCCACAGGCATCGGGCGG
AGGCGGCACGCGCGGCTGTGTACTGCTTAAATCGCGCCCCGACGCGACCT
CACAACGGAGGGATACCGTATGAGAAATGGCACGGCACGACACCAAAGCT
TGACCGCCTTCGTGTCTTCGGCTGCACGGCGTACGTGATGTTCCAGTCGC
AGCAGAGATGCAAATTCGAGGACAAAGCATGA
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