mRNA_H-paniculata_contig29143.7948.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig29143.7948.1
Unique NamemRNA_H-paniculata_contig29143.7948.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29143.7948.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig29143contigH-paniculata_contig29143:286..2569 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size282
Cds size279
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig29143.7948.1prot_H-paniculata_contig29143.7948.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig29143 287..2569 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929891.3748713-CDS-H-paniculata_contig29143:286..4181622929891.3748713-CDS-H-paniculata_contig29143:286..418Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29143 287..418 -
1691481057.3968067-CDS-H-paniculata_contig29143:286..4181691481057.3968067-CDS-H-paniculata_contig29143:286..418Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29143 287..418 -
1622929891.3906872-CDS-H-paniculata_contig29143:2067..21591622929891.3906872-CDS-H-paniculata_contig29143:2067..2159Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29143 2068..2159 -
1691481057.4137566-CDS-H-paniculata_contig29143:2067..21591691481057.4137566-CDS-H-paniculata_contig29143:2067..2159Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29143 2068..2159 -
1622929891.4089074-CDS-H-paniculata_contig29143:2514..25691622929891.4089074-CDS-H-paniculata_contig29143:2514..2569Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29143 2515..2569 -
1691481057.4256485-CDS-H-paniculata_contig29143:2514..25691691481057.4256485-CDS-H-paniculata_contig29143:2514..2569Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29143 2515..2569 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig29143.7948.1

>prot_H-paniculata_contig29143.7948.1 ID=prot_H-paniculata_contig29143.7948.1|Name=mRNA_H-paniculata_contig29143.7948.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=93bp
GRLSSNTGELQAEPPSTQEALDCERRNGGAGWYTEERQVVKKSLDDHHEE
SSKHGKGLFAAKDLKKDEQVGVPLMGNFRLYDGGDQVVQAVLE
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mRNA from alignment at H-paniculata_contig29143:286..2569-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig29143.7948.1 ID=mRNA_H-paniculata_contig29143.7948.1|Name=mRNA_H-paniculata_contig29143.7948.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2284bp|location=Sequence derived from alignment at H-paniculata_contig29143:286..2569- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCCGTCTCAGCAGTAACACTGGAGAGCTACAGGCCGAGCCGCCATCCAC
TCAAGGTATGAAGCGTCGTGCACAACTGTTTGCAGAGTAAGTTGTCGTGG
ATCTCCTTGTTTATGCAATGGCCTCGATCTTGTGCCGTGTTGGGTATTTC
ATTTGCTCCATTGTACCGGTAGTGCAGCTCAAAAATCGCTGGGTGCAAGT
GCTGGTGTCGCTTCGACGCCAAGCATCACTGTTGTTGACCTATCTCGTCG
TTTGTTATGGATATACCGCACTGACGGCTCGTGGAAGTGGATAGCAATGT
TGTTGTGGCTGTGTAGAGCGGCAATTTTCAAATTTGTTTGTTTGTTCGCC
ATGATGGTGCTCCAAGACTGTTGTTGTCCCTGTTACACAGAGCGTAACCC
TAACCCTAAGAGGCTCTTGACTGTGAGCGAAGGAATGGCGGAGCAGGCTG
GTACACAGAGGAGAGGCAAGTAGTGAAGAAGTCGCTTGACGATCATCACG
AGGTAACCCTGTTGTGTGTTGCGTGTGTGTGTTGCCCTCCTCTCATGGTT
TACTGGGCAGATTTGGATACAGGGTGCATAAGGCATGGTTGCTTCCAATC
CTGCTGATACGGTCGGTGGATTGATTCCCGTTGTCTGATAATTTGAGCTT
GGCCTCTTGAACAACAGCTTGGTCATGGGACAGTGGTGCACCGCCACGAC
GTATGCTGCCCACAGGTATCTCCTCGCGCTGAACTGCTACAAAATACTGC
ACTGTCATCACCCGATGCCCCCTGTGTATTTACCTTCTCTGCTCCTTTTC
TCCTCAAGGATGTAGGTCGGTCGCGACAAGTCTACATGAACGCCAAGTTT
ACAGATATCCTGAAGATTCGAAATTGATCGTCAGGGTACAGCCTTTTTCT
AATATAACCCAGAATCTCCATCTCAAAGTTGGATCTCCATCTCACCACTA
TACTGTTATATCAAAAATACATCATTTTTATCACTATATGTCGCTTCTAT
CCAACCAGGTAACCAAATTTCGCTATCTGCTAAACTACCAGGACTGTCTT
TAGAGGCTACAAGCAGATCAAAACCGTATAGAGCTTTTCCCGATGCTGCT
TGAATAAAATGCGCAAAAACAGGTTCAACTAATATTTGTTTTTCAGGTTG
ATCAAATGCTACTACAGTAAACAGCATATTGGTGAAATGGGGACCCAACT
TTGAGATGGGGCTCACCAGTGTGTAGGACGTGCTTGCTAAAGGTACAGTT
GTTGTTTTTGTCCAGACCAGGAACTTCTCAGTGGTTGCTTTGGTGAATAT
CATGGGAACAAAAGGTGGCCGTCAACCAACGTAGTGGTAGGGTTCTGGCG
AAGATCACTGTTGACGATTTATTTGTGCTTCTGTCCCTACCAACACTTGG
TTGCAGGTCAATACAAAGGCTGATGATACGCTTGTGATGCAAGGAAAGAC
TTGCACGAAGCTGACGAAGAATCTCTCAACTATCATACTGGGGGCAGATA
CTTTGCCATGCAGCTTACATGAGCTAGCAAAGGTACACGAGAGCATCAAT
GAGATGACGAGGAGGGAGACCTGGCACATCGCACAGTTGCGGAATCGTTG
CGGCCCTCTTTGATCTGAAAAATTTCCAGAATATTGGTGAAATGGGAACC
CAAGTTTGAGATGGACCCTGGGTTATATTGGAAATAGGCTTTATCCTGAA
GATCCGATTTTTGATTTTCAGGAAACAGCCTATTTCCAATATAACCCAGG
ATCCCCATCTCAAACTTGGGTTCCGATTTCACCAATATGTTGTTAAATAC
AGGTGAACTTTGTGGCACATCCTTGTTCGTGAGAGCATTTTGTCTCCAAA
CCATCTACTACGTTTCATACAACAATTGTGTGAGCGTATATGTCTGCTTG
CACTTCGTTATTTCTCCGTGCGTAGCATTCAAGGCCTATGTTGATGACGC
CTCTGTTGGGCACTTTGTTGTGACAGGCATAACTAATAATAATGTTGCTT
ACGTGGTTACCTGCTCTGTTTGTAGTATGTATTACTACACTACTTCTTAC
GTACACTGTTGTCAGGTAATGTATGATGTGTTTTCAGGATGACAAGGTGT
GGGTCTTACGAGTGACTCAATATTATGCTTCCGGCTGTTTCTTGGGCGCA
GGAATCCTCCAAGCATGGCAAGGGCCTCTTTGCTGCAAAAGATTTGAAGA
AGGACGAGCAGGTTGGTGTGCCACTGATGGGGAACTTCAGATTGTACGAT
GGTGGAGATCAAGTTGTTCAAGCTGTTCTTGAGA
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Coding sequence (CDS) from alignment at H-paniculata_contig29143:286..2569-

>mRNA_H-paniculata_contig29143.7948.1 ID=mRNA_H-paniculata_contig29143.7948.1|Name=mRNA_H-paniculata_contig29143.7948.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at H-paniculata_contig29143:286..2569- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCCGTCTCAGCAGTAACACTGGAGAGCTACAGGCCGAGCCGCCATCCAC
TCAAGGGCCGTCTCAGCAGTAACACTGGAGAGCTACAGGCCGAGCCGCCA
TCCACTCAAGAGGCTCTTGACTGTGAGCGAAGGAATGGCGGAGCAGGCTG
GTACACAGAGGAGAGGCAAGTAGTGAAGAAGTCGCTTGACGATCATCACG
AGAGGCTCTTGACTGTGAGCGAAGGAATGGCGGAGCAGGCTGGTACACAG
AGGAGAGGCAAGTAGTGAAGAAGTCGCTTGACGATCATCACGAGGAATCC
TCCAAGCATGGCAAGGGCCTCTTTGCTGCAAAAGATTTGAAGAAGGACGA
GCAGGTTGGTGTGCCACTGATGGGGAACTTCAGATTGTACGATGGTGGAG
ATCAAGTTGTTCAAGCTGTTCTTGAGGAATCCTCCAAGCATGGCAAGGGC
CTCTTTGCTGCAAAAGATTTGAAGAAGGACGAGCAGGTTGGTGTGCCACT
GATGGGGAACTTCAGATTGTACGATGGTGGAGATCAAGTTGTTCAAGCTG
TTCTTGAG
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