mRNA_H-paniculata_contig29127.7944.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig29127.7944.1 vs. uniprot
Match: A0A438GVH9_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GVH9_VITVI) HSP 1 Score: 58.5 bits (140), Expect = 7.360e-8 Identity = 35/98 (35.71%), Postives = 57/98 (58.16%), Query Frame = 1
Query: 7 SSKSNVHWIIDSGCTRYHLTPQRDLFQKFCQVVRSPIATTGEGEL-DIEGQGDVEGLIWTAEGTMCIIFC-NILYVPEASDSILSVERMVSQGIEAYF 294
+S W+IDSGCT H+TP+ F++ Q +S + G G+L D++G+G V + E CI + ++L+VPE S S+LSV +M+ + +F
Sbjct: 284 TSSCTETWLIDSGCTN-HMTPELSYFKELDQSYKSKVKI-GNGDLVDVKGKGVV-----SVETPTCIKYILDVLFVPEISQSLLSVGQMLEKNYSLHF 374
BLAST of mRNA_H-paniculata_contig29127.7944.1 vs. uniprot
Match: UPI00063AEE8E (uncharacterized protein LOC105793376 n=1 Tax=Gossypium raimondii TaxID=29730 RepID=UPI00063AEE8E) HSP 1 Score: 57.4 bits (137), Expect = 1.370e-7 Identity = 33/96 (34.38%), Postives = 53/96 (55.21%), Query Frame = 1
Query: 7 SSKSNVHWIIDSGCTRYHLTPQRDLFQKFCQVVRSPIATTGEGELDIEGQGDVEGLIWTAEGTMCIIFCNILYVPEASDSILSVERMVSQGIEAYF 294
SSK N W+IDSGCT +H+ +F++ S + G GEL ++ +G + +I T G I C +LYVP+ ++LSV +++ +G F
Sbjct: 150 SSKVNKIWLIDSGCT-HHIASDESMFKELDTSFESKVGI-GNGEL-LKARGKGKAVICTKLGIKTI--CEVLYVPDIDQNLLSVGQLLEKGYSLLF 240
BLAST of mRNA_H-paniculata_contig29127.7944.1 vs. uniprot
Match: A0A177UET0_9BASI (Uncharacterized protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177UET0_9BASI) HSP 1 Score: 52.4 bits (124), Expect = 9.990e-6 Identity = 34/98 (34.69%), Postives = 57/98 (58.16%), Query Frame = 1
Query: 4 ESSKSNVHWIIDSGCTRYHLTPQRDLFQKFCQVVRSPIATTGEGE-LDIEGQGDVEGLIWTAEGTMCIIFCNILYVPEASDSILSVERMVSQGIEAYF 294
E ++S + +I+DSG T + +T R F +F V S + TT G+ + + G G V+ + T G + I + YVPEA ++LSV +MV++G++ F
Sbjct: 121 EGTRSPLTFIVDSGATEHIVTDLR-WFTEFEPVEESRVVTTDNGDRMPVLGIGAVK--VCTENGEI-ISIDGVTYVPEAVSNLLSVSKMVNEGLKIVF 214
BLAST of mRNA_H-paniculata_contig29127.7944.1 vs. uniprot
Match: A0A0C2ZW70_9AGAM (CCHC-type domain-containing protein (Fragment) n=1 Tax=Scleroderma citrinum Foug A TaxID=1036808 RepID=A0A0C2ZW70_9AGAM) HSP 1 Score: 52.0 bits (123), Expect = 1.410e-5 Identity = 27/87 (31.03%), Postives = 50/87 (57.47%), Query Frame = 1
Query: 28 WIIDSGCTRYHLTPQRDLFQKFCQVVRSPIATTGEGELDIEGQGDVEGLIWTAEGTMCIIFCNILYVPEASDSILSVERMVSQGIEA 288
W+ DS + HL+ Q D+F++F + R+ I G ++ ++G+G + WT + I+ ++LYVP+A +S+LS+ + G A
Sbjct: 291 WLADSAVS-LHLSNQCDMFKEFTPLNRT-IQGVGNMDIPVKGRGMMRLKSWTDKQNYVIVLQDVLYVPQAPNSLLSIPHLDKSGRHA 375
BLAST of mRNA_H-paniculata_contig29127.7944.1 vs. uniprot
Match: A0A438HIE0_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HIE0_VITVI) HSP 1 Score: 51.2 bits (121), Expect = 2.670e-5 Identity = 33/90 (36.67%), Postives = 53/90 (58.89%), Query Frame = 1
Query: 28 WIIDSGCTRYHLTPQRDLFQKFCQVVRSPIATTGEGEL-DIEGQGDVEGLIWTAEGTMCIIFCNILYVPEASDSILSVERMVSQGIEAYF 294
W+I SGCT H+TP+ F++ Q + + G+G+L D++G+G V I T G I ++L+VPE S S+LSV +M+ + +F
Sbjct: 26 WLIGSGCTN-HMTPKLSNFKELDQSYKLKVKI-GDGDLVDVKGKGVVA--IETPTGIKYI--SDVLFVPEISQSLLSVGQMLEKNYSLHF 109
BLAST of mRNA_H-paniculata_contig29127.7944.1 vs. uniprot
Match: A0A177SWY1_9BASI (Uncharacterized protein (Fragment) n=1 Tax=Tilletia caries TaxID=13290 RepID=A0A177SWY1_9BASI) HSP 1 Score: 50.1 bits (118), Expect = 5.260e-5 Identity = 33/98 (33.67%), Postives = 55/98 (56.12%), Query Frame = 1
Query: 4 ESSKSNVHWIIDSGCTRYHLTPQRDLFQKFCQVVRSPIATTGEGE-LDIEGQGDVEGLIWTAEGTMCIIFCNILYVPEASDSILSVERMVSQGIEAYF 294
E ++S + +I+DSG T + +T R F +F V S + TT G+ + + G G V+ + T G + I+ YVP A ++LSV +MV +G++ F
Sbjct: 67 EGTRSLLTFIVDSGATEHIVTDLR-WFTEFEPVEESRVVTTANGDRMPVLGIGAVK--VCTENGEIISIY-GAAYVPGAVSNLLSVSKMVDEGLKVIF 160
BLAST of mRNA_H-paniculata_contig29127.7944.1 vs. uniprot
Match: A0A5N4AX79_PHOPY (CCHC-type domain-containing protein n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A5N4AX79_PHOPY) HSP 1 Score: 50.1 bits (118), Expect = 6.610e-5 Identity = 28/97 (28.87%), Postives = 48/97 (49.48%), Query Frame = 1
Query: 7 SSKSNVHWIIDSGCTRYHLTPQRDLFQKFCQVVRSPIATTGEGELDIEGQGDVEGLIWTAEGTMCIIFCN-ILYVPEASDSILSVERMVSQGIEAYF 294
+S + WI+DSG TR H+T R F + +S I G + ++G+G + + ++ + N +LY P ++LSV R+V G+ F
Sbjct: 268 NSMHHSGWIVDSGATR-HITNDRKFFSSLDESYKSVIEVGNGGTVYVKGKGSGKLMFMDSKDNVRRAIANEVLYAPNMVGNVLSVRRLVENGLTIEF 363
BLAST of mRNA_H-paniculata_contig29127.7944.1 vs. uniprot
Match: A0A1Y1LME8_PHOPY (CCHC-type domain-containing protein n=8 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1LME8_PHOPY) HSP 1 Score: 50.1 bits (118), Expect = 6.780e-5 Identity = 28/97 (28.87%), Postives = 48/97 (49.48%), Query Frame = 1
Query: 7 SSKSNVHWIIDSGCTRYHLTPQRDLFQKFCQVVRSPIATTGEGELDIEGQGDVEGLIWTAEGTMCIIFCN-ILYVPEASDSILSVERMVSQGIEAYF 294
+S + WI+DSG TR H+T R F + +S I G + ++G+G + + ++ + N +LY P ++LSV R+V G+ F
Sbjct: 267 NSMHHSGWIVDSGATR-HITNDRKFFSSLDESYKSVIEVGNGGTVYVKGKGSGKLMFMDSKDNVRRAIANEVLYAPNMVGNVLSVRRLVENGLTIEF 362 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29127.7944.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig29127.7944.1 >prot_H-paniculata_contig29127.7944.1 ID=prot_H-paniculata_contig29127.7944.1|Name=mRNA_H-paniculata_contig29127.7944.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=98bp MESSKSNVHWIIDSGCTRYHLTPQRDLFQKFCQVVRSPIATTGEGELDIEback to top mRNA from alignment at H-paniculata_contig29127:2519..2812+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig29127.7944.1 ID=mRNA_H-paniculata_contig29127.7944.1|Name=mRNA_H-paniculata_contig29127.7944.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=294bp|location=Sequence derived from alignment at H-paniculata_contig29127:2519..2812+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig29127:2519..2812+ >mRNA_H-paniculata_contig29127.7944.1 ID=mRNA_H-paniculata_contig29127.7944.1|Name=mRNA_H-paniculata_contig29127.7944.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at H-paniculata_contig29127:2519..2812+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |