mRNA_H-paniculata_contig29127.7944.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig29127.7944.1
Unique NamemRNA_H-paniculata_contig29127.7944.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig29127.7944.1 vs. uniprot
Match: A0A438GVH9_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GVH9_VITVI)

HSP 1 Score: 58.5 bits (140), Expect = 7.360e-8
Identity = 35/98 (35.71%), Postives = 57/98 (58.16%), Query Frame = 1
Query:    7 SSKSNVHWIIDSGCTRYHLTPQRDLFQKFCQVVRSPIATTGEGEL-DIEGQGDVEGLIWTAEGTMCIIFC-NILYVPEASDSILSVERMVSQGIEAYF 294
            +S     W+IDSGCT  H+TP+   F++  Q  +S +   G G+L D++G+G V     + E   CI +  ++L+VPE S S+LSV +M+ +    +F
Sbjct:  284 TSSCTETWLIDSGCTN-HMTPELSYFKELDQSYKSKVKI-GNGDLVDVKGKGVV-----SVETPTCIKYILDVLFVPEISQSLLSVGQMLEKNYSLHF 374          
BLAST of mRNA_H-paniculata_contig29127.7944.1 vs. uniprot
Match: UPI00063AEE8E (uncharacterized protein LOC105793376 n=1 Tax=Gossypium raimondii TaxID=29730 RepID=UPI00063AEE8E)

HSP 1 Score: 57.4 bits (137), Expect = 1.370e-7
Identity = 33/96 (34.38%), Postives = 53/96 (55.21%), Query Frame = 1
Query:    7 SSKSNVHWIIDSGCTRYHLTPQRDLFQKFCQVVRSPIATTGEGELDIEGQGDVEGLIWTAEGTMCIIFCNILYVPEASDSILSVERMVSQGIEAYF 294
            SSK N  W+IDSGCT +H+     +F++      S +   G GEL ++ +G  + +I T  G   I  C +LYVP+   ++LSV +++ +G    F
Sbjct:  150 SSKVNKIWLIDSGCT-HHIASDESMFKELDTSFESKVGI-GNGEL-LKARGKGKAVICTKLGIKTI--CEVLYVPDIDQNLLSVGQLLEKGYSLLF 240          
BLAST of mRNA_H-paniculata_contig29127.7944.1 vs. uniprot
Match: A0A177UET0_9BASI (Uncharacterized protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177UET0_9BASI)

HSP 1 Score: 52.4 bits (124), Expect = 9.990e-6
Identity = 34/98 (34.69%), Postives = 57/98 (58.16%), Query Frame = 1
Query:    4 ESSKSNVHWIIDSGCTRYHLTPQRDLFQKFCQVVRSPIATTGEGE-LDIEGQGDVEGLIWTAEGTMCIIFCNILYVPEASDSILSVERMVSQGIEAYF 294
            E ++S + +I+DSG T + +T  R  F +F  V  S + TT  G+ + + G G V+  + T  G + I    + YVPEA  ++LSV +MV++G++  F
Sbjct:  121 EGTRSPLTFIVDSGATEHIVTDLR-WFTEFEPVEESRVVTTDNGDRMPVLGIGAVK--VCTENGEI-ISIDGVTYVPEAVSNLLSVSKMVNEGLKIVF 214          
BLAST of mRNA_H-paniculata_contig29127.7944.1 vs. uniprot
Match: A0A0C2ZW70_9AGAM (CCHC-type domain-containing protein (Fragment) n=1 Tax=Scleroderma citrinum Foug A TaxID=1036808 RepID=A0A0C2ZW70_9AGAM)

HSP 1 Score: 52.0 bits (123), Expect = 1.410e-5
Identity = 27/87 (31.03%), Postives = 50/87 (57.47%), Query Frame = 1
Query:   28 WIIDSGCTRYHLTPQRDLFQKFCQVVRSPIATTGEGELDIEGQGDVEGLIWTAEGTMCIIFCNILYVPEASDSILSVERMVSQGIEA 288
            W+ DS  +  HL+ Q D+F++F  + R+ I   G  ++ ++G+G +    WT +    I+  ++LYVP+A +S+LS+  +   G  A
Sbjct:  291 WLADSAVS-LHLSNQCDMFKEFTPLNRT-IQGVGNMDIPVKGRGMMRLKSWTDKQNYVIVLQDVLYVPQAPNSLLSIPHLDKSGRHA 375          
BLAST of mRNA_H-paniculata_contig29127.7944.1 vs. uniprot
Match: A0A438HIE0_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HIE0_VITVI)

HSP 1 Score: 51.2 bits (121), Expect = 2.670e-5
Identity = 33/90 (36.67%), Postives = 53/90 (58.89%), Query Frame = 1
Query:   28 WIIDSGCTRYHLTPQRDLFQKFCQVVRSPIATTGEGEL-DIEGQGDVEGLIWTAEGTMCIIFCNILYVPEASDSILSVERMVSQGIEAYF 294
            W+I SGCT  H+TP+   F++  Q  +  +   G+G+L D++G+G V   I T  G   I   ++L+VPE S S+LSV +M+ +    +F
Sbjct:   26 WLIGSGCTN-HMTPKLSNFKELDQSYKLKVKI-GDGDLVDVKGKGVVA--IETPTGIKYI--SDVLFVPEISQSLLSVGQMLEKNYSLHF 109          
BLAST of mRNA_H-paniculata_contig29127.7944.1 vs. uniprot
Match: A0A177SWY1_9BASI (Uncharacterized protein (Fragment) n=1 Tax=Tilletia caries TaxID=13290 RepID=A0A177SWY1_9BASI)

HSP 1 Score: 50.1 bits (118), Expect = 5.260e-5
Identity = 33/98 (33.67%), Postives = 55/98 (56.12%), Query Frame = 1
Query:    4 ESSKSNVHWIIDSGCTRYHLTPQRDLFQKFCQVVRSPIATTGEGE-LDIEGQGDVEGLIWTAEGTMCIIFCNILYVPEASDSILSVERMVSQGIEAYF 294
            E ++S + +I+DSG T + +T  R  F +F  V  S + TT  G+ + + G G V+  + T  G +  I+    YVP A  ++LSV +MV +G++  F
Sbjct:   67 EGTRSLLTFIVDSGATEHIVTDLR-WFTEFEPVEESRVVTTANGDRMPVLGIGAVK--VCTENGEIISIY-GAAYVPGAVSNLLSVSKMVDEGLKVIF 160          
BLAST of mRNA_H-paniculata_contig29127.7944.1 vs. uniprot
Match: A0A5N4AX79_PHOPY (CCHC-type domain-containing protein n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A5N4AX79_PHOPY)

HSP 1 Score: 50.1 bits (118), Expect = 6.610e-5
Identity = 28/97 (28.87%), Postives = 48/97 (49.48%), Query Frame = 1
Query:    7 SSKSNVHWIIDSGCTRYHLTPQRDLFQKFCQVVRSPIATTGEGELDIEGQGDVEGLIWTAEGTMCIIFCN-ILYVPEASDSILSVERMVSQGIEAYF 294
            +S  +  WI+DSG TR H+T  R  F    +  +S I     G + ++G+G  + +   ++  +     N +LY P    ++LSV R+V  G+   F
Sbjct:  268 NSMHHSGWIVDSGATR-HITNDRKFFSSLDESYKSVIEVGNGGTVYVKGKGSGKLMFMDSKDNVRRAIANEVLYAPNMVGNVLSVRRLVENGLTIEF 363          
BLAST of mRNA_H-paniculata_contig29127.7944.1 vs. uniprot
Match: A0A1Y1LME8_PHOPY (CCHC-type domain-containing protein n=8 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1LME8_PHOPY)

HSP 1 Score: 50.1 bits (118), Expect = 6.780e-5
Identity = 28/97 (28.87%), Postives = 48/97 (49.48%), Query Frame = 1
Query:    7 SSKSNVHWIIDSGCTRYHLTPQRDLFQKFCQVVRSPIATTGEGELDIEGQGDVEGLIWTAEGTMCIIFCN-ILYVPEASDSILSVERMVSQGIEAYF 294
            +S  +  WI+DSG TR H+T  R  F    +  +S I     G + ++G+G  + +   ++  +     N +LY P    ++LSV R+V  G+   F
Sbjct:  267 NSMHHSGWIVDSGATR-HITNDRKFFSSLDESYKSVIEVGNGGTVYVKGKGSGKLMFMDSKDNVRRAIANEVLYAPNMVGNVLSVRRLVENGLTIEF 362          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29127.7944.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A438GVH9_VITVI7.360e-835.71Retrovirus-related Pol polyprotein from transposon... [more]
UPI00063AEE8E1.370e-734.38uncharacterized protein LOC105793376 n=1 Tax=Gossy... [more]
A0A177UET0_9BASI9.990e-634.69Uncharacterized protein n=2 Tax=Tilletia TaxID=132... [more]
A0A0C2ZW70_9AGAM1.410e-531.03CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A438HIE0_VITVI2.670e-536.67Retrovirus-related Pol polyprotein from transposon... [more]
A0A177SWY1_9BASI5.260e-533.67Uncharacterized protein (Fragment) n=1 Tax=Tilleti... [more]
A0A5N4AX79_PHOPY6.610e-528.87CCHC-type domain-containing protein n=1 Tax=Photin... [more]
A0A1Y1LME8_PHOPY6.780e-528.87CCHC-type domain-containing protein n=8 Tax=Photin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig29127contigH-paniculata_contig29127:2519..2812 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size294
Cds size294
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929890.967328-CDS-H-paniculata_contig29127:2518..28121622929890.967328-CDS-H-paniculata_contig29127:2518..2812Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29127 2519..2812 +
1691481057.2039897-CDS-H-paniculata_contig29127:2518..28121691481057.2039897-CDS-H-paniculata_contig29127:2518..2812Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29127 2519..2812 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig29127.7944.1prot_H-paniculata_contig29127.7944.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig29127 2519..2812 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig29127.7944.1

>prot_H-paniculata_contig29127.7944.1 ID=prot_H-paniculata_contig29127.7944.1|Name=mRNA_H-paniculata_contig29127.7944.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=98bp
MESSKSNVHWIIDSGCTRYHLTPQRDLFQKFCQVVRSPIATTGEGELDIE
GQGDVEGLIWTAEGTMCIIFCNILYVPEASDSILSVERMVSQGIEAYF
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mRNA from alignment at H-paniculata_contig29127:2519..2812+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig29127.7944.1 ID=mRNA_H-paniculata_contig29127.7944.1|Name=mRNA_H-paniculata_contig29127.7944.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=294bp|location=Sequence derived from alignment at H-paniculata_contig29127:2519..2812+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGTCATCTAAATCAAACGTACACTGGATAATTGATTCGGGCTGCAC CAGGTATCACCTGACCCCGCAACGCGACCTCTTCCAAAAGTTTTGCCAAG TTGTACGTAGTCCCATTGCCACAACGGGCGAGGGGGAGTTGGATATAGAG GGGCAAGGAGACGTGGAAGGTTTAATTTGGACTGCGGAAGGAACTATGTG CATCATCTTCTGCAATATATTATATGTACCTGAAGCATCAGACAGCATTT TATCGGTTGAGCGGATGGTGAGCCAAGGAATCGAGGCGTATTTT
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Coding sequence (CDS) from alignment at H-paniculata_contig29127:2519..2812+

>mRNA_H-paniculata_contig29127.7944.1 ID=mRNA_H-paniculata_contig29127.7944.1|Name=mRNA_H-paniculata_contig29127.7944.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at H-paniculata_contig29127:2519..2812+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGTCATCTAAATCAAACGTACACTGGATAATTGATTCGGGCTGCAC
CAGGTATCACCTGACCCCGCAACGCGACCTCTTCCAAAAGTTTTGCCAAG
TTGTACGTAGTCCCATTGCCACAACGGGCGAGGGGGAGTTGGATATAGAG
GGGCAAGGAGACGTGGAAGGTTTAATTTGGACTGCGGAAGGAACTATGTG
CATCATCTTCTGCAATATATTATATGTACCTGAAGCATCAGACAGCATTT
TATCGGTTGAGCGGATGGTGAGCCAAGGAATCGAGGCGTATTTTATGGAG
TCATCTAAATCAAACGTACACTGGATAATTGATTCGGGCTGCACCAGGTA
TCACCTGACCCCGCAACGCGACCTCTTCCAAAAGTTTTGCCAAGTTGTAC
GTAGTCCCATTGCCACAACGGGCGAGGGGGAGTTGGATATAGAGGGGCAA
GGAGACGTGGAAGGTTTAATTTGGACTGCGGAAGGAACTATGTGCATCAT
CTTCTGCAATATATTATATGTACCTGAAGCATCAGACAGCATTTTATCGG
TTGAGCGGATGGTGAGCCAAGGAATCGAGGCGTATTTT
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