mRNA_H-paniculata_contig28988.7897.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28988.7897.1
Unique NamemRNA_H-paniculata_contig28988.7897.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig28988.7897.1 vs. uniprot
Match: A0A6H5JQ10_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JQ10_9PHAE)

HSP 1 Score: 367 bits (942), Expect = 4.010e-115
Identity = 223/488 (45.70%), Postives = 280/488 (57.38%), Query Frame = 2 
Query: 1016 PCSTLKPVALSYSNGKRLAVIGGYNAEAILDDIWSLDLEALEWSRVPVDGR-SPPPRAFFRGCGGPP--------PGGDAREDGDA--FAYIFGGSDAAGILSNELWCFDIKDRAWEKLHTGDLAG-----GSETMI--PCPRSNHAMCRMGNILAVHGGESSSGEQLNDLWLFNLVTAAWNKA----------CISRTGPGPCPRSSHCMVFAATGGSSSGSTETTCFGGSLVLFGGLGSDSSVVVEGDIEKDSMPLNDLWVLSPVSSSL-LGSGAGSGAEEGGISRATDDSEAL-AAWSLVMLEGVGPSPRSLSALAVRRLPPHFYSSDEDECDGNDRCDRGQESHGIAELFIFGGYGLVELPGSTIAGDCDDVGQDSDEE-GDIIMAYIDDLWGLSLKVQEPTEEAIDANVDADSNTFPPSDYVVSADGIGWVNEEGMGFTGPSPVEGRNGHTLTCCGNRLVLFGGFVGDGFDQGVHVAEVPSVT 2386
            P      VA++  +G+RL V+GGYNAE +L D W   LE  EW R+ V G  SPP R FFRGC GPP        P G    +G+   FAY+FGG DA G  +N +WC D+ +R W +++     G     G+ T +  PC RSNHAMCR G +LAVHGGESSSG  L D+W F+  +A W +A               GP PCPRSSHC+ FAA     S +T ++   G+LVLFGGLG           E+++MPLNDLWVL   ++++ LG G+GSGA +G      ++ E +   WS V+L+GVGPSPRSL+A+     P   Y        GN        S+  A+LF+FGGYGLVEL    +    D   +   EE G+IIMAYIDDLW LS +           +  AD+  F P++         WVNE GMGF G S VEGRNGHTLT CG +LVLFGGFVGDGFD GVHVAE PS T
Sbjct:   24 PAGRCGHVAVASGDGRRLIVLGGYNAEGVLSDAWEFHLERREWDRISVTGGPSPPERTFFRGCAGPPLPSATLPQPQGTEAGEGEEGLFAYVFGGMDAEGNATNAVWCLDVDNRTWHEVYREQEQGLQQQDGASTRMVAPCARSNHAMCRAGGVLAVHGGESSSGALLGDVWFFHPTSATWKEAGDAPPTSAAXXXXXXGPSPCPRSSHCLAFAACSADGSATTSSSS-AGTLVLFGGLGHADG------FEEETMPLNDLWVLHLTAAAVALGPGSGSGASDG------EEGEVVRCVWSAVLLDGVGPSPRSLAAIVA---PRQRY--------GN------TGSNNRADLFLFGGYGLVELSSGGMV--IDGAEEXXXEECGEIIMAYIDDLWRLSSE-----------SGGADAGGFAPTE---------WVNEAGMGFAGESIVEGRNGHTLTWCGKKLVLFGGFVGDGFDAGVHVAEPPSST 459
[Close]
BLAST of mRNA_H-paniculata_contig28988.7897.1 vs. uniprot
Match: A0A835ZEE3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEE3_9STRA)

HSP 1 Score: 186 bits (472), Expect = 4.260e-46
Identity = 147/481 (30.56%), Postives = 212/481 (44.07%), Query Frame = 2 
Query: 1040 ALSYSNGKRLAVIGGYNAEAILDDIWSLDLEALEWSRV--PVDGRSPPPRAFFRGCGGPPPGGDAREDGDAFAYIFGGSDAAGILSNELWCF--DIKDRAWEKLHTGDLAGGSETMIPCPRSNHAMCR-MGNILAVHGGESSSGEQLNDLWLFNLVTAAWNKACISRTGPGPCPRSSHCMVFAATGGSSSGSTETTCFGGSLVLFGGL-------------------GSDSS------------VVVEGDIEKDSMPLNDLWVLSPVSSSLLGSGAGSGAEEGGISRATDDSEALAAWSLVMLEGVGPSPRSLSALAVRRLPPHFYSSDEDECDGNDRCDRGQESHGIAELFIFGGYGLVELPGSTIAGDCDDVGQDSDEEGDIIMAYIDDLWGLSLKVQEPTEEAIDANVDADSNTFPPSDYVVSADGIGWVNEEGMGFTGPSPVEGRNGHTLTCCGNRLVLFGGFVGDGFDQGVHVAEV 2374
            AL   N   + ++GGY  E + DD WS D  +  W+ V  P    SP PR  F     PP       D     +IFGG+D    L  ++W F  +     W K+     A       P PR+N A+C    ++L +HGGE   G+ L+D W F++    W++   +   P PC R++H + +              C   S VLFGGL                   G+ S             +  + D E D  PLNDLWVLS V                 +  A+   + L  WS+V+++ +GPSPRS +A+A                          +  G+  +F+FGG+GLVELPGS+      DVG  ++EEG I MAY+DDLW L L  +                               W++E  +G+ G SP+EGR+GH+LT C ++LVL+GG VGDG+D  V+ A++
Sbjct:   46 ALHDRNTGGILILGGYTDE-LYDDAWSFDPASKTWTPVKQPSAQPSPLPRVSFSATSAPPADPSLTSDAST-GFIFGGTDGESALG-DMWRFSCEASTLTWCKVEPNTGAAS-----PTPRANAALCAGPRSLLLLHGGED--GDLLSDAWWFDISAQQWSRLAAA-AAPQPCARANHALTY-----------SPPC--DSFVLFGGLTTAALAESMSRESALDAEAGAPSMLQRSAMAEALQPIQEDADAEPDMAPLNDLWVLSRVE----------------VDDASVPGQWL--WSMVLMDDIGPSPRSDTAMAALL-----------------------DGEGL--IFLFGGHGLVELPGSS------DVG--NEEEGVITMAYLDDLWALDLSARR------------------------------WLDESALGYPGESPIEGRSGHSLTPCVDQLVLYGGLVGDGYDGAVYAADL 421
[Close]
BLAST of mRNA_H-paniculata_contig28988.7897.1 vs. uniprot
Match: A0A7S1IDN7_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IDN7_9EUGL)

HSP 1 Score: 76.3 bits (186), Expect = 4.520e-11
Identity = 70/258 (27.13%), Postives = 107/258 (41.47%), Query Frame = 2 
Query:  983 QWMHLYYNSRSPCSTLKPVA----LSYSNGKRLAVIGGYNAEAI-LDDIWSLDLEALEWSRVPV---DGRSPPPRAFFRGCGGPPPGGDAREDGDAFAYIFGG--SDAAGILSNELWCFDI--KDRAWEKLHTGDLAGGSETMIPCPRSNHAMCRMGNILAVHGGESSSGEQLNDLWLFNLVTAAWNKACISRTGPGPCPRSSHCMVFAATGGSSSGSTETTCFGGSLVLFGGLGSDSSVVVEGDIEKDSMPLNDLWV 1720
            QW  ++++     ST+ P+A     S   G RL V GG N   +  +D+WS+ L+   W RV     + ++P PR    GC                A +FGG        + ++LW  +   +   W+ +    L        PC RS H+       + + GG      QLNDLW+F++V+  W +  +S + P P PR  H     A               G L+L+GG G+D++            PL DLWV
Sbjct:   12 QWDEIFFDQCKAGSTV-PIARAGHCSVVLGDRLYVFGGANRCGLHFNDVWSMKLDDHSWERVQFAKGNAQTPKPRNGHTGCA----------ISTTEALLFGGIVQVPEPHVYDDLWIMEAGAETSLWKGVQPNGLR-------PCGRSGHSASYADGKMYLFGGHDDE-RQLNDLWIFDVVSNTWTQ--LSTSSPWPSPRDMHVAGLGA---------------GHLLLYGGRGTDNA------------PLADLWV 221
[Close]
BLAST of mRNA_H-paniculata_contig28988.7897.1 vs. uniprot
Match: A0A0D2WH94_CAPO3 (Uncharacterized protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WH94_CAPO3)

HSP 1 Score: 60.5 bits (145), Expect = 7.510e-6
Identity = 40/159 (25.16%), Postives = 68/159 (42.77%), Query Frame = 2 
Query: 1061 KRLAVIGGYNAEA-ILDDIWSLDLEALEWSRVPVDGRSPPPRAFFRGCGGPPPGGDAREDGDAFAYIFGGSDAAGILSNELWCFDIKDRAWEKLHTGDLAGGSETMIPCPRSNHAMCRMGNILAVHGGESSSGEQLNDLWLFNLVTAAWNKACISRTGP 1534
            +++ V GG  A   +L+D+++L+L+ LEW++V   G  P PR                 DG     +FGG  ++    ++++  D+    W  + T      +    P PR  HA+      + VH G     +   DLW F   +  W+   IS + P
Sbjct:   76 RKMVVFGGSKASTEMLNDLYTLNLDTLEWTQVEASGTVPTPRGGHSAV-------VHSGDGKTRMLVFGGISSSKQALHDMYSLDLDSFVWSAVPT------TAENWPGPRYQHAVAANDTHMFVHSGAIDLKKYQTDLWQFEFASNTWSP--ISASNP 219
[Close]
BLAST of mRNA_H-paniculata_contig28988.7897.1 vs. uniprot
Match: A0A7S2TVL9_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TVL9_9EUKA)

HSP 1 Score: 59.7 bits (143), Expect = 1.420e-5
Identity = 47/175 (26.86%), Postives = 73/175 (41.71%), Query Frame = 2 
Query:  983 QWMHLYYNSRSPCSTLKPVALSYSNGKRLAVIGGYNAEAILDDIWSLDLEALEWSRV-PVDGRSPPPRAFFRGCGGPPPGGDAREDGDAFAYIFGGSDAAGILSNELWCFDIKDRAWEKLHTGDLAGGSETMIPCPRSNHAMCRMGNILAVHGGESSSGEQLNDLWLFNLVTAAW 1504
            +W  L      PC    P ++ + NGK     G  N    L+D++SLDL+ + W+R+ P++ +         GCG    G            I  G        N+ W FD+    W +L     +G +   +P PR N A    G  +   GG+ + G+ L+D   F+L T  W
Sbjct:  109 EWKKLSTTGEIPCPRGYP-SMVHKNGKVYLFGGVANGFQFLNDMYSLDLKTMRWTRLKPINDKEMGVPLGRCGCGMVACGN--------LLVITAGLGKGYAHFNDTWAFDMSLSTWLQLKNS--SGPAVGSLPPPRRNPATFSCGLEIVTVGGKGADGKSLSDAHSFDLNTYTW 272
[Close]
BLAST of mRNA_H-paniculata_contig28988.7897.1 vs. uniprot
Match: A0A2V0NVF8_9CHLO (BTB domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NVF8_9CHLO)

HSP 1 Score: 58.5 bits (140), Expect = 4.510e-5
Identity = 46/148 (31.08%), Postives = 63/148 (42.57%), Query Frame = 2 
Query: 1250 AYIFGGSDAAGILSNELWCFDIKDRA--WEKLHTGDLAGGSETMIPCPRSNHAMCRMGNILAVHGGESSSGEQLNDLWLFNLVTAAWNKACISRTGPGPCPRSSHCMVFAATGG-------SSSGSTETTCF-GGSLVLFGGLGSDSS 1663
            AY+FGG D  G LS++L   D+ D +  W ++       G     P PR+ HA     + L V GG  + G +L+D W FN  T  W                  C V AAT         ++SG+ E     GG L+  G LG D +
Sbjct:   26 AYLFGGRDETGALSDQLLALDLADPSAPWRQVGAAVKERG-----PGPRAGHATLAYADQLWVVGGRGADGSRLDDAWRFNPATQEW------------------CAVGAATLAGRWPSRPAASGAGELLALHGGLLIALGQLGQDEN 150
[Close]
BLAST of mRNA_H-paniculata_contig28988.7897.1 vs. uniprot
Match: L1JB21_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JB21_GUITC)

HSP 1 Score: 57.8 bits (138), Expect = 7.880e-5
Identity = 50/192 (26.04%), Postives = 73/192 (38.02%), Query Frame = 2 
Query: 1001 YNSRSPCSTLKPVALSYSNGKRLAVIGGYNAEAILDDIWSLDLEALEWSRVPVDGRSPPPRAFFRGCGGPPPGGDAREDGDAFAYIFGGSDAAGILSNELWCFDIKDRAWEKLHTGDLAGGSETMIPCPRSNHAMCRMGNILAVHGGESSSGEQ-----LNDLWLFNLVTAAWNKACISRTGPGPCPRSSHC 1561
            +N+R P       A S+   K L    G   E + +D+++ DL+ LEW+  P+ G  P  R     C            G  + + FGG    G   N+    ++    W K      A       P  R +H   R G  + V GG S S  Q     L D+ + N+    W+   I  + P   PR  HC
Sbjct:   68 HNTRLPEGREGHTATSFR--KFLVFFAGLGREGLTNDVFTFDLDKLEWAYPPLTGELPIRRYHHSSC----------SFGREWVH-FGGYSEYGDCENDTVVLNMDQWKWYKPRVSGKA-------PSRRMSHTASRFGRSMLVFGGYSVSDGQDDSCYLCDVHVLNIDKWTWSAPKIGNSVPNSLPRGGHC 239
[Close]
BLAST of mRNA_H-paniculata_contig28988.7897.1 vs. uniprot
Match: A0A7S4N7Q6_GUITH (Hypothetical protein (Fragment) n=2 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4N7Q6_GUITH)

HSP 1 Score: 57.8 bits (138), Expect = 8.910e-5
Identity = 50/192 (26.04%), Postives = 73/192 (38.02%), Query Frame = 2 
Query: 1001 YNSRSPCSTLKPVALSYSNGKRLAVIGGYNAEAILDDIWSLDLEALEWSRVPVDGRSPPPRAFFRGCGGPPPGGDAREDGDAFAYIFGGSDAAGILSNELWCFDIKDRAWEKLHTGDLAGGSETMIPCPRSNHAMCRMGNILAVHGGESSSGEQ-----LNDLWLFNLVTAAWNKACISRTGPGPCPRSSHC 1561
            +N+R P       A S+   K L    G   E + +D+++ DL+ LEW+  P+ G  P  R     C            G  + + FGG    G   N+    ++    W K      A       P  R +H   R G  + V GG S S  Q     L D+ + N+    W+   I  + P   PR  HC
Sbjct:   86 HNTRLPEGREGHTATSFR--KFLVFFAGLGREGLTNDVFTFDLDKLEWAYPPLTGELPIRRYHHSSC----------SFGREWVH-FGGYSEYGDCENDTVVLNMDQWKWYKPRVSGKA-------PSRRMSHTASRFGRSMLVFGGYSVSDGQDDSCYLCDVHVLNIDKWTWSAPKIGNSVPNSLPRGGHC 257
[Close]
BLAST of mRNA_H-paniculata_contig28988.7897.1 vs. uniprot
Match: A0A3S3P8E7_9ACAR (Leucine-zipper-like transcriptional regulator 1 n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3P8E7_9ACAR)

HSP 1 Score: 57.8 bits (138), Expect = 8.950e-5
Identity = 50/176 (28.41%), Postives = 75/176 (42.61%), Query Frame = 2 
Query:  983 QWMHLYYNSRSPCSTLKPVALSYSNGKRLAVIGGYNAEAILDDIWSLDLEALE-WSRVPVDGRSPPPRAFFRGCGGPPPGGDAREDGDAFAYIFGGSDAAGILSNELWCFDIKDRAWEKLHTGDLAGGSETMIPCPRSNHAMCRMGNILAVHGGESSSGEQLNDLWLFNLVTAAWN 1507
            QW+   +  R P       A  Y +  RL +  GY+  A L+D+WSL+L  +E W  V   G  PP    F       P   AR+      ++F G   A  ++N+L+ F    + W ++ T +         P  R  H M    + L V GG + S    NDL  F+L +  W+
Sbjct:  145 QWIEWKFAGRVPVPRSAHGAAVYDD--RLWIFAGYDGNARLNDMWSLNLTKVEEWECVEQLGDCPPTCCNF-------PVAVARDS----MFVFSGQSGA-KMTNDLFMFHFTTKFWTRISTTEHILRGAPPPPTRRYGHTMVACDHHLYVFGGAADSTLP-NDLHSFDLNSKTWS 305
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28988.7897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5JQ10_9PHAE4.010e-11545.70Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZEE3_9STRA4.260e-4630.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1IDN7_9EUGL4.520e-1127.13Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A0D2WH94_CAPO37.510e-625.16Uncharacterized protein n=1 Tax=Capsaspora owczarz... [more]
A0A7S2TVL9_9EUKA1.420e-526.86Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A2V0NVF8_9CHLO4.510e-531.08BTB domain-containing protein n=1 Tax=Raphidocelis... [more]
L1JB21_GUITC7.880e-526.04Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7S4N7Q6_GUITH8.910e-526.04Hypothetical protein (Fragment) n=2 Tax=Guillardia... [more]
A0A3S3P8E7_9ACAR8.950e-528.41Leucine-zipper-like transcriptional regulator 1 n=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28988contigH-paniculata_contig28988:64..3095 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score370.5
Seed ortholog evalue1.1e-99
Seed eggNOG ortholog2880.D7G1R4
KEGG koko:K14966
KEGG Pathwayko04212,ko05168,map04212,map05168
Hectar predicted targeting categoryother localisation
EggNOG free text desc.nitrile biosynthetic process
EggNOG OGsKOG0379@1,KOG0379@2759
Ec32 ortholog descriptionKelch-type beta propeller
Ec32 orthologEc-17_000270.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03029,ko03036
Exons3
Model size2519
Cds size1410
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28988.7897.1prot_H-paniculata_contig28988.7897.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28988 185..2107 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929882.7190957-UTR-H-paniculata_contig28988:63..1841622929882.7190957-UTR-H-paniculata_contig28988:63..184Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28988 64..184 -
1691481053.463141-UTR-H-paniculata_contig28988:63..1841691481053.463141-UTR-H-paniculata_contig28988:63..184Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28988 64..184 -
1622929882.7777145-UTR-H-paniculata_contig28988:2107..30951622929882.7777145-UTR-H-paniculata_contig28988:2107..3095Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28988 2108..3095 -
1691481053.4980688-UTR-H-paniculata_contig28988:2107..30951691481053.4980688-UTR-H-paniculata_contig28988:2107..3095Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28988 2108..3095 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929882.7318416-CDS-H-paniculata_contig28988:184..11561622929882.7318416-CDS-H-paniculata_contig28988:184..1156Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28988 185..1156 -
1691481053.473437-CDS-H-paniculata_contig28988:184..11561691481053.473437-CDS-H-paniculata_contig28988:184..1156Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28988 185..1156 -
1622929882.746488-CDS-H-paniculata_contig28988:1383..16131622929882.746488-CDS-H-paniculata_contig28988:1383..1613Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28988 1384..1613 -
1691481053.4816566-CDS-H-paniculata_contig28988:1383..16131691481053.4816566-CDS-H-paniculata_contig28988:1383..1613Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28988 1384..1613 -
1622929882.762301-CDS-H-paniculata_contig28988:1899..21071622929882.762301-CDS-H-paniculata_contig28988:1899..2107Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28988 1900..2107 -
1691481053.4898221-CDS-H-paniculata_contig28988:1899..21071691481053.4898221-CDS-H-paniculata_contig28988:1899..2107Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28988 1900..2107 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28988.7897.1

>prot_H-paniculata_contig28988.7897.1 ID=prot_H-paniculata_contig28988.7897.1|Name=mRNA_H-paniculata_contig28988.7897.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=470bp
MHLYYNSRSPCSTLKPVALSYSNGKRLAVIGGYNAEAILDDIWSLDLEAL
EWSRVPVDGRSPPPRAFFRGCGGPPPGGDAREDGDAFAYIFGGSDAAGIL
SNELWCFDIKDRAWEKLHTGDLAGGSETMIPCPRSNHAMCRMGNILAVHG
GESSSGEQLNDLWLFNLVTAAWNKACISRTGPGPCPRSSHCMVFAATGGS
SSGSTETTCFGGSLVLFGGLGSDSSVVVEGDIEKDSMPLNDLWVLSPVSS
SLLGSGAGSGAEEGGISRATDDSEALAAWSLVMLEGVGPSPRSLSALAVR
RLPPHFYSSDEDECDGNDRCDRGQESHGIAELFIFGGYGLVELPGSTIAG
DCDDVGQDSDEEGDIIMAYIDDLWGLSLKVQEPTEEAIDANVDADSNTFP
PSDYVVSADGIGWVNEEGMGFTGPSPVEGRNGHTLTCCGNRLVLFGGFVG
DGFDQGVHVAEVPSVTSLE*
back to top

mRNA from alignment at H-paniculata_contig28988:64..3095-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28988.7897.1 ID=mRNA_H-paniculata_contig28988.7897.1|Name=mRNA_H-paniculata_contig28988.7897.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3032bp|location=Sequence derived from alignment at H-paniculata_contig28988:64..3095- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAGAGAACAAAACCCAAGTGCTTGCTCTGTACTACATCCCAAGACCTAG
AACCGACCTGCATAGAGCAGGCGGTGTCCCCTCGAGAGCTAGTCTCTCCC
GGGAGCATCGTGTTCTCACAATGATTAAGTAGTATTTCTTGGTCGACCTC
TGCGACTGATTTCGGAAAATTGCCACCACTGAGAGTCGATATCTGCGACG
AAGTAGTCGAATTGGTTGCGACCAATCAAATTGCGGCAACGCTAATCAAA
TTCATCGACCTAGAGGAAAATCAAACAGGACAACTTGTTTCGCAACATAC
CAACAAACCCGCGGACAAGAAAACACCATTACTGGTTGTTAGTCGACTGG
TGAGACTGAATCCCGAAAATGGGGTTGACTACCAGTCTACTGGTGCGACT
GAATCCCGAAAACGAAGTCGACGACCACTCGATTGGTGCGACTGGATTTC
GAAACTGGACTCGACTGGTGCGAATAATCAGCCGACTAATAAAAAAATAC
ATAACGTCTACGACTGCCATAACTGTTAGTCATAGTCGTCCGGCGTGTGA
ACAGTTTTGACTCGAAAAATTGCGGTCCAACACAAAAAAATCATGTAAGA
TTCCAATGAAGAAATATTAAACTAAAATCGCAGATGATTGGGTGCCTTTG
CAGACAAGATGTACCATACTTATGGGACAGGGAAGTATGGGGCACAATGA
TATAGCACGGTTGTTGCCTCTGCACGAGTTAACTTTGTAGTTGGCAGCGT
TTTTTGGGTCCAAAGGTCGTTTAACCTAAGTTTGCGCCGCGCTCAACACA
TCACACAACTTTGTGGGATATGGAGAGCGTTTTCATGTTTTTACTTGCCG
TAAGTACTAACCATCTGCTGGGCTAAGTGGGTCGTCGATTCCACAAGTTC
GTCTAGATGATATCGTCCAGAAGATCTTCAAAACGAATGACACCGTCTGT
TTTTTTCCATTCGCTGTTGTTGACGGTTTTTTCAATGGATGCATCTCTAT
TATAATTCCCGCTCGCCTTGCTCAACTCTCAAACCAGTGGCGCTGTCGTA
CAGTAATGGCAAGCGTCTGGCGGTCATCGGAGGGTACAACGCTGAAGCAA
TCTTAGACGATATCTGGTCCTTAGATCTGGAGGCGCTGGAGTGGTCTCGG
GTTCCTGTTGATGGTCGGTCACCACCTCCACGAGCTTTCTTCCGAGGTGC
GGAACTTCGCGTCTTCCATTACGGCACTCACGGAGGAATTGCTTCACATG
CTGCAGTACCCGGCACCGGTGTTCTGCCAATGCTGTAAAGCTTCTACTAA
ATCGGATATTGTAGTCGAGCACTAAATCTCGAAGGACCACGCAGGAACGT
GAATTGTGATATTTGTCATCCTCGACTGTCTAACAGACCGCTCTAGGGGG
CGAATTTTCATCAGTGCTTCAAGGCCACCGCTTCCACAACAGTATACCCT
CGATTCATACACTTCTGGTATTTCCGTTGCAGGGTGTGGTGGCCCACCAC
CGGGAGGCGATGCACGTGAAGATGGAGACGCGTTTGCGTACATTTTTGGA
GGGTCGGATGCAGCAGGGATTTTATCGAACGAACTGTGGTGTTTTGACAT
AAAAGATAGGGCTTGGGAGAAACTGCATACAGGGGACCTTGCCGGAGGTA
GTGAAACCATGATTCCGTGCCCTCGGTCGAACCACGCCATGTGTAGAATG
GGCAACATTTTGGTGAGGCATCTGGCAAATAGAGTTTCGTTAGCTTTGTC
TAGTATACAGCATCCTCGCCTGACCGCGTGGCAGATTTATTGGTAGAAAA
TTAGTAAGGTCGTGCTTCTCCCAGTCTTGGTACGTTGGCCAGCTGGCCAA
CGCTCGTTGTGATGAAGACACATACCATAGTCGAATCTTCACCTGTGCCT
ATAGTCTCGAACCAACCCTCCAAATTCTGCTGTGCACAGGCGGTACACGG
TGGAGAGTCTTCTTCGGGTGAGCAGCTCAACGACCTCTGGTTATTCAACC
TCGTCACCGCGGCGTGGAACAAAGCATGCATATCTAGAACGGGTCCGGGT
CCTTGCCCTCGTTCGTCTCATTGCATGGTCTTCGCGGCGACCGGAGGAAG
CTCCTCTGGTTCCACGGAAACTACTTGTTTTGGTGGGTCTCTCGTCTTAT
TCGGAGGTCTAGGTTCCGACAGTAGCGTGGTAGTAGAAGGTGATATAGAG
AAAGACTCAATGCCTCTGAACGACCTCTGGGTGTTGAGTCCCGTGTCATC
TTCATTGTTGGGGTCAGGAGCAGGTTCCGGTGCGGAAGAAGGAGGGATTT
CTCGTGCAACTGATGACAGTGAGGCGTTGGCAGCATGGTCTTTGGTAATG
CTGGAAGGCGTGGGTCCATCCCCACGGTCTCTTTCGGCCCTTGCGGTGCG
ACGACTACCGCCGCATTTTTATAGCTCTGACGAAGATGAATGTGATGGGA
ACGATCGATGCGATCGTGGACAAGAGAGTCATGGAATAGCAGAGCTATTT
ATATTTGGCGGCTACGGTCTCGTGGAGTTACCAGGCAGCACTATAGCGGG
GGACTGCGACGACGTAGGTCAGGATTCTGACGAGGAGGGGGATATTATCA
TGGCTTATATTGATGATCTTTGGGGGTTGAGTTTAAAAGTACAAGAACCA
ACTGAAGAGGCTATTGACGCGAATGTGGATGCTGATAGCAACACGTTTCC
TCCCAGCGATTATGTTGTGTCTGCCGATGGCATTGGGTGGGTAAATGAGG
AAGGAATGGGGTTCACCGGGCCTTCGCCGGTTGAGGGGCGGAACGGTCAC
ACGTTAACATGTTGTGGAAATAGGCTGGTATTGTTTGGTGGGTTTGTAGG
GGATGGGTTTGATCAGGGTGTGCACGTTGCGGAGGTGCCCTCCGTTACTT
CACTAGAATGATCGCTTTAATAGTCAACGAATGCAAACAAGAGAAATGGA
CGTGATGTATCCCAATCCTTTTTCTTTTTTTTTAACCCCCGGAAGGCTGA
GGCAAAAACCTTTACCGATGCTTCCATACGTG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig28988:64..3095-

>mRNA_H-paniculata_contig28988.7897.1 ID=mRNA_H-paniculata_contig28988.7897.1|Name=mRNA_H-paniculata_contig28988.7897.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2820bp|location=Sequence derived from alignment at H-paniculata_contig28988:64..3095- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCATCTCTATTATAATTCCCGCTCGCCTTGCTCAACTCTCAAACCAGT
GGCGCTGTCGTACAGTAATGGCAAGCGTCTGGCGGTCATCGGAGGGTACA
ACGCTGAAGCAATCTTAGACGATATCTGGTCCTTAGATCTGGAGGCGCTG
GAGTGGTCTCGGGTTCCTGTTGATGGTCGGTCACCACCTCCACGAGCTTT
CTTCCGAGATGCATCTCTATTATAATTCCCGCTCGCCTTGCTCAACTCTC
AAACCAGTGGCGCTGTCGTACAGTAATGGCAAGCGTCTGGCGGTCATCGG
AGGGTACAACGCTGAAGCAATCTTAGACGATATCTGGTCCTTAGATCTGG
AGGCGCTGGAGTGGTCTCGGGTTCCTGTTGATGGTCGGTCACCACCTCCA
CGAGCTTTCTTCCGAGGGTGTGGTGGCCCACCACCGGGAGGCGATGCACG
TGAAGATGGAGACGCGTTTGCGTACATTTTTGGAGGGTCGGATGCAGCAG
GGATTTTATCGAACGAACTGTGGTGTTTTGACATAAAAGATAGGGCTTGG
GAGAAACTGCATACAGGGGACCTTGCCGGAGGTAGTGAAACCATGATTCC
GTGCCCTCGGTCGAACCACGCCATGTGTAGAATGGGCAACATTTTGGGTG
TGGTGGCCCACCACCGGGAGGCGATGCACGTGAAGATGGAGACGCGTTTG
CGTACATTTTTGGAGGGTCGGATGCAGCAGGGATTTTATCGAACGAACTG
TGGTGTTTTGACATAAAAGATAGGGCTTGGGAGAAACTGCATACAGGGGA
CCTTGCCGGAGGTAGTGAAACCATGATTCCGTGCCCTCGGTCGAACCACG
CCATGTGTAGAATGGGCAACATTTTGGCGGTACACGGTGGAGAGTCTTCT
TCGGGTGAGCAGCTCAACGACCTCTGGTTATTCAACCTCGTCACCGCGGC
GTGGAACAAAGCATGCATATCTAGAACGGGTCCGGGTCCTTGCCCTCGTT
CGTCTCATTGCATGGTCTTCGCGGCGACCGGAGGAAGCTCCTCTGGTTCC
ACGGAAACTACTTGTTTTGGTGGGTCTCTCGTCTTATTCGGAGGTCTAGG
TTCCGACAGTAGCGTGGTAGTAGAAGGTGATATAGAGAAAGACTCAATGC
CTCTGAACGACCTCTGGGTGTTGAGTCCCGTGTCATCTTCATTGTTGGGG
TCAGGAGCAGGTTCCGGTGCGGAAGAAGGAGGGATTTCTCGTGCAACTGA
TGACAGTGAGGCGTTGGCAGCATGGTCTTTGGTAATGCTGGAAGGCGTGG
GTCCATCCCCACGGTCTCTTTCGGCCCTTGCGGTGCGACGACTACCGCCG
CATTTTTATAGCTCTGACGAAGATGAATGTGATGGGAACGATCGATGCGA
TCGTGGACAAGAGAGTCATGGAATAGCAGAGCTATTTATATTTGGCGGCT
ACGGTCTCGTGGAGTTACCAGGCAGCACTATAGCGGGGGACTGCGACGAC
GTAGGTCAGGATTCTGACGAGGAGGGGGATATTATCATGGCTTATATTGA
TGATCTTTGGGGGTTGAGTTTAAAAGTACAAGAACCAACTGAAGAGGCTA
TTGACGCGAATGTGGATGCTGATAGCAACACGTTTCCTCCCAGCGATTAT
GTTGTGTCTGCCGATGGCATTGGGTGGGTAAATGAGGAAGGAATGGGGTT
CACCGGGCCTTCGCCGGTTGAGGGGCGGAACGGTCACACGTTAACATGTT
GTGGAAATAGGCTGGTATTGTTTGGTGGGTTTGTAGGGGATGGGTTTGAT
CAGGGTGTGCACGTTGCGGAGGTGCCCTCCGTTACTTCACTAGAATGAGC
GGTACACGGTGGAGAGTCTTCTTCGGGTGAGCAGCTCAACGACCTCTGGT
TATTCAACCTCGTCACCGCGGCGTGGAACAAAGCATGCATATCTAGAACG
GGTCCGGGTCCTTGCCCTCGTTCGTCTCATTGCATGGTCTTCGCGGCGAC
CGGAGGAAGCTCCTCTGGTTCCACGGAAACTACTTGTTTTGGTGGGTCTC
TCGTCTTATTCGGAGGTCTAGGTTCCGACAGTAGCGTGGTAGTAGAAGGT
GATATAGAGAAAGACTCAATGCCTCTGAACGACCTCTGGGTGTTGAGTCC
CGTGTCATCTTCATTGTTGGGGTCAGGAGCAGGTTCCGGTGCGGAAGAAG
GAGGGATTTCTCGTGCAACTGATGACAGTGAGGCGTTGGCAGCATGGTCT
TTGGTAATGCTGGAAGGCGTGGGTCCATCCCCACGGTCTCTTTCGGCCCT
TGCGGTGCGACGACTACCGCCGCATTTTTATAGCTCTGACGAAGATGAAT
GTGATGGGAACGATCGATGCGATCGTGGACAAGAGAGTCATGGAATAGCA
GAGCTATTTATATTTGGCGGCTACGGTCTCGTGGAGTTACCAGGCAGCAC
TATAGCGGGGGACTGCGACGACGTAGGTCAGGATTCTGACGAGGAGGGGG
ATATTATCATGGCTTATATTGATGATCTTTGGGGGTTGAGTTTAAAAGTA
CAAGAACCAACTGAAGAGGCTATTGACGCGAATGTGGATGCTGATAGCAA
CACGTTTCCTCCCAGCGATTATGTTGTGTCTGCCGATGGCATTGGGTGGG
TAAATGAGGAAGGAATGGGGTTCACCGGGCCTTCGCCGGTTGAGGGGCGG
AACGGTCACACGTTAACATGTTGTGGAAATAGGCTGGTATTGTTTGGTGG
GTTTGTAGGGGATGGGTTTGATCAGGGTGTGCACGTTGCGGAGGTGCCCT
CCGTTACTTCACTAGAATGA
back to top