mRNA_H-paniculata_contig28841.7864.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28841.7864.1
Unique NamemRNA_H-paniculata_contig28841.7864.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28841.7864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28841contigH-paniculata_contig28841:133..577 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size447
Cds size363
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929878.4499962-CDS-H-paniculata_contig28841:132..4951622929878.4499962-CDS-H-paniculata_contig28841:132..495Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28841 133..495 +
1691481051.5179684-CDS-H-paniculata_contig28841:132..4951691481051.5179684-CDS-H-paniculata_contig28841:132..495Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28841 133..495 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929878.466345-UTR-H-paniculata_contig28841:495..5771622929878.466345-UTR-H-paniculata_contig28841:495..577Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28841 496..577 +
1691481051.5266137-UTR-H-paniculata_contig28841:495..5771691481051.5266137-UTR-H-paniculata_contig28841:495..577Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28841 496..577 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28841.7864.1prot_H-paniculata_contig28841.7864.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28841 133..495 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28841.7864.1

>prot_H-paniculata_contig28841.7864.1 ID=prot_H-paniculata_contig28841.7864.1|Name=mRNA_H-paniculata_contig28841.7864.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=121bp
NRFLVLLVSILLNRKEKFVRETNQRCCVFPWFVRKPRDDGGGLFRELLAY
YYLASATFFLLFFEVPVVLGAVPPCAPISPLCRYRHVSGSNGGRTEWKGR
CATGVSRNVINEVCFPKVML*
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mRNA from alignment at H-paniculata_contig28841:133..577+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28841.7864.1 ID=mRNA_H-paniculata_contig28841.7864.1|Name=mRNA_H-paniculata_contig28841.7864.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=445bp|location=Sequence derived from alignment at H-paniculata_contig28841:133..577+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACCGATTTCTTGTTCTGCTGGTTTCGATTCTTTTGAACAGGAAAGAGAA
GTTTGTAAGGGAAACTAATCAGCGCTGTTGCGTATTTCCTTGGTTCGTGC
GTAAGCCAAGAGATGACGGGGGGGGATTGTTCCGTGAGCTGCTGGCGTAC
TATTATCTTGCGTCGGCTACTTTTTTTCTTCTCTTTTTTGAAGTGCCTGT
CGTGCTTGGCGCAGTGCCGCCGTGTGCGCCCATTAGCCCACTTTGTAGGT
ACAGGCACGTGAGTGGTTCGAATGGAGGAAGAACAGAATGGAAAGGACGG
TGTGCAACGGGTGTCAGTCGTAATGTGATAAATGAGGTTTGTTTCCCGAA
AGTTATGTTGTAAATCCATCCCTCCAAAGGAAGTAACATGTATTTTGACG
GTTAAAGGAAAAAAACGTTCCGTATCTGACGGTGGAGGCAGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig28841:133..577+

>mRNA_H-paniculata_contig28841.7864.1 ID=mRNA_H-paniculata_contig28841.7864.1|Name=mRNA_H-paniculata_contig28841.7864.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at H-paniculata_contig28841:133..577+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACCGATTTCTTGTTCTGCTGGTTTCGATTCTTTTGAACAGGAAAGAGAA
GTTTGTAAGGGAAACTAATCAGCGCTGTTGCGTATTTCCTTGGTTCGTGC
GTAAGCCAAGAGATGACGGGGGGGGATTGTTCCGTGAGCTGCTGGCGTAC
TATTATCTTGCGTCGGCTACTTTTTTTCTTCTCTTTTTTGAAGTGCCTGT
CGTGCTTGGCGCAGTGCCGCCGTGTGCGCCCATTAGCCCACTTTGTAGGT
ACAGGCACGTGAGTGGTTCGAATGGAGGAAGAACAGAATGGAAAGGACGG
TGTGCAACGGGTGTCAGTCGTAATGTGATAAATGAGGTTTGTTTCCCGAA
AGTTATGTTGTAAAACCGATTTCTTGTTCTGCTGGTTTCGATTCTTTTGA
ACAGGAAAGAGAAGTTTGTAAGGGAAACTAATCAGCGCTGTTGCGTATTT
CCTTGGTTCGTGCGTAAGCCAAGAGATGACGGGGGGGGATTGTTCCGTGA
GCTGCTGGCGTACTATTATCTTGCGTCGGCTACTTTTTTTCTTCTCTTTT
TTGAAGTGCCTGTCGTGCTTGGCGCAGTGCCGCCGTGTGCGCCCATTAGC
CCACTTTGTAGGTACAGGCACGTGAGTGGTTCGAATGGAGGAAGAACAGA
ATGGAAAGGACGGTGTGCAACGGGTGTCAGTCGTAATGTGATAAATGAGG
TTTGTTTCCCGAAAGTTATGTTGTAA
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