mRNA_H-paniculata_contig28798.7847.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig28798.7847.1 vs. uniprot
Match: A0A6H5L5H7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5H7_9PHAE) HSP 1 Score: 276 bits (706), Expect = 9.440e-82 Identity = 147/283 (51.94%), Postives = 182/283 (64.31%), Query Frame = 1
Query: 1 PMCHPDSGELLARTPQIRDAWAIYYGRLATDATGNSRLRTKWESWPASPSLPHLKQLDEDISDSEVRVALQKMKRYKAPGEDGVPVDFSRLLGYHPDQPIIMGDAIVRMTNVMWKSQIIPEMWTKSTIVSIPKKGDMTIMGNYRGISFMSSVLKILVVIIAQRLSDALEGASILSPAQGSFRRREECI--------ICQRRKLREQKTFLTFVDLKKAHDTVPHEALFGKLNHYGVRGRMSGFIREVYARSTISVRCSGGNSPSVRLNRGVRQGCPLSPTLFN 825
P+ HPDS LL I AW +Y RLA D TGNSR KW +W A+P H+ +LD I E+ AL ++KR+K+PG DGVP DF L G MG ++ M N++WK+++IP +ST+V IPKKGDMT M N+RGIS M++VLK+LV+II+ RL+ A E + S +Q FR REEC+ ICQRRK R + +L FVDLKKA+DTVP EALF KL YGVRG M FIR +YA S I+VR S S L RGVRQGCPLSP LFN
Sbjct: 440 PVQHPDSRALLTSANDISAAWRTHYQRLAADVTGNSRKSDKWNAWRAAPQRRHMTELDGPILREEMVEALARIKRHKSPGNDGVPADFLELAGGEEGSQSPMGKTVLGMLNLIWKTRVIPTDRRESTVVPIPKKGDMTDMNNHRGISLMNTVLKVLVMIISTRLNSAFERHKLFSQSQAGFRTREECVTQAACLLEICQRRKFRRKSAYLMFVDLKKAYDTVPQEALFAKLVFYGVRGEMLAFIRALYANSKIAVRTGDLLSDSFSLERGVRQGCPLSPVLFN 722
BLAST of mRNA_H-paniculata_contig28798.7847.1 vs. uniprot
Match: A0A3M2C3P5_9GAMM (Reverse transcriptase domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3M2C3P5_9GAMM) HSP 1 Score: 194 bits (492), Expect = 1.830e-52 Identity = 123/306 (40.20%), Postives = 167/306 (54.58%), Query Frame = 1
Query: 1 PMCHPDSGELLARTPQIRDAWAIYYGRLATDATGNSRLRTKWESWPAS-PSLPHLKQLDEDISDSEVRVALQKMKRYKAPGEDGVPVDFSRLL---------------GYHPDQPIIMGDAIVRMTNVMWKSQIIPEMWTKSTIVSIPK-KGDMTIMGNYRGISFMSSVLKILVVIIAQRLSDALEGA--SILSPAQGSFRRREECI--------ICQRRKLREQKTFLTFVDLKKAHDTVPHEALFGKLNHYGVRGRMSGFIREVYARSTISVR----CSGGNSPSVRLNRGVRQGCPLSPTLFN 825
P+ HP S E+L +I AW +Y+G LA D TG+ WE +S PSLP L+ L+ + EVR AL MK KAPG DGV DF +L HP P M + ++ MW + +P +W + +V I K +GD M NYRGIS + VLK+L II +RL+ ++ L Q FR REEC+ + +RR++ + ++L F+DLKKA+DTVPH ALF KL GVRG+ FI+ +Y S++S R C SP+ L RG+RQGCP+SP LFN
Sbjct: 617 PIKHPHSKEVLTDPLEIAQAWNLYFGELAEDRTGHQSDTAHWERVGSSIPSLPPLEGLNRPLQWKEVRAALLSMKNGKAPGCDGVSADFLKLCCGQSLEEEDDDGDDAETHPPNP--MAAVLFKLLCAMWAQETVPSVWNMAEVVPIFKNRGDQLEMENYRGISLIPVVLKLLCTIITRRLASMIDDQINPRLHKEQAGFRSREECLGHIVALYEVLRRRQIMQLPSYLAFIDLKKAYDTVPHGALFHKLEKIGVRGKCLRFIQNLYRHSSVSFRAPSDCCRNISPAP-LRRGLRQGCPMSPLLFN 919
BLAST of mRNA_H-paniculata_contig28798.7847.1 vs. uniprot
Match: A0A7S1SJ55_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SJ55_9CHLO) HSP 1 Score: 179 bits (455), Expect = 1.470e-47 Identity = 105/291 (36.08%), Postives = 155/291 (53.26%), Query Frame = 1
Query: 1 PMCHPDSGELLARTPQIRDAWAIYYGRLATDA-TGNSRLRTKWESWP----ASPSLPHLKQLDEDISDSEVRVALQKMKRYKAPGEDGVPVDFSRLLGYHPDQPIIMGDAIVRMTNVMWKSQIIPEMWTKSTIVSIPKKGDMTIMGNYRGISFMSSVLKILVVIIAQRLSDALEGASILSPAQGSFRRREECI--------ICQRRKLREQKTFLTFVDLKKAHDTVPHEALFGKLNHYGVRGRMSGFIREVYARSTISVRCS---GGNSPSVRLNRGVRQGCPLSPTLFN 825
P+ P SG L +I WA +Y L D R E+W P P L ++ I E+ AL+++ KA G DG+ + +L Y PD P G +++ + N +W ++ +P+ W S +VSI KKGD+T+M NYRGIS M +++K+L+ ++ QRL D + ++ QG F EEC I RR+ T+ F+DL+KA+DT+PHE LF KL G+ G M F++ +Y ST+ V+ G S + + RG+RQGCP SP LFN
Sbjct: 332 PVHDPTSGVLHTEPGEINACWARHYRELLRDPHPAACRATIYHEAWERRRGGRPPSPALDGINGPIGGGELCKALKRLNNNKASGVDGITAETLKLAIYAPDSPF--GKSLLELMNNIWTTKCVPKQWCSSAVVSILKKGDVTVMDNYRGISIMGALIKLLMTVVTQRLQDVCQTNKLIRRWQGGFMPGEECPLQVASIFDIAGRRQALGLPTYAGFIDLRKAYDTIPHELLFSKLEANGITGHMLSFLKALYRDSTVQVKTGEAPGILSDPIPIERGLRQGCPASPILFN 620
BLAST of mRNA_H-paniculata_contig28798.7847.1 vs. uniprot
Match: A0A1J5WUS4_9MICR (Reverse transcriptase domain-containing protein n=1 Tax=Amphiamblys sp. WSBS2006 TaxID=1866961 RepID=A0A1J5WUS4_9MICR) HSP 1 Score: 173 bits (438), Expect = 2.760e-45 Identity = 111/284 (39.08%), Postives = 154/284 (54.23%), Query Frame = 1
Query: 16 DSGELLARTPQ-IRDAWAIYYGRLATDATGNSRLRTKWESWPASPSLP--HLKQLDEDISDSEVRVALQKMKRYKAPGEDGVPVDFSRLLGYHPDQPIIMGDAIVRMTNVMWKSQIIPEMWTKSTIVSIPKKGDMTIMGNYRGISFMSSVLKILVVIIAQRLSDALEGASILSPAQGSFRRREECI--------ICQRRKLREQKTFLTFVDLKKAHDTVPHEALFGKL-NHYGVRG--RMSGFIREVYARSTISVRCSGGNSPSVRLNRGVRQGCPLSPTLFN 825
D+G L P+ I + W +Y + D TG+SR R+ WE+ P P + +LDE IS+ EV AL MK +KA G DGV + ++ D P M +IV++ W +I E W + +V+IPKKG + NYRGIS + LK+L I A RL+D +E + Q FRR EEC+ QRR ++ T F+D +KA+D VPHEA+ KL + G G +M F+R +Y +S+R G + RL G+RQGCPLSPTLFN
Sbjct: 336 DAGGTLQVVPEKIVEVWEAHYREMFRDKTGHSRDRSYWENKPIRERGPGERVSKLDEAISEEEVAEALSGMKNWKAAGPDGVIPEILKIAA--EDCP--MRKSIVKVLQKAWDEGVIDEEWELAEVVTIPKKGKAELTENYRGISLLPVCLKLLCTIAASRLNDYMEENGLFDERQAGFRRGEECLGHVAYLVETAQRRSREKKATHACFIDFRKAYDRVPHEAMLRKLRSETGTDGDGKMMRFVRALYENPRLSIRADGVKN-ECRLEVGLRQGCPLSPTLFN 614
BLAST of mRNA_H-paniculata_contig28798.7847.1 vs. uniprot
Match: A0A1R1YAQ4_9FUNG (RNA-directed DNA polymerase from mobile element jockey (Fragment) n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1YAQ4_9FUNG) HSP 1 Score: 172 bits (436), Expect = 5.230e-45 Identity = 99/277 (35.74%), Postives = 151/277 (54.51%), Query Frame = 1
Query: 19 SGELLARTPQIRDAWAIYYGRLATDATGNSRLRTKWESWPASPSLPHLKQLDEDISDSEVRVALQKMKRYKAPGEDGVPVDFSRLLGYHPDQPIIMGDAIVRMTNVMWKSQIIPEMWTKSTIVSIPKKGDMTIMGNYRGISFMSSVLKILVVIIAQRLSDALEGASILSPAQGSFRRREECI--------ICQRRKLREQKTFLTFVDLKKAHDTVPHEALFGKLNHYGVRGRMSGFIREVYARSTISVRCSGGNSPSVRLNRGVRQGCPLSPTLFN 825
S +L+ + + WA ++ LA D+TGNSR KW S S + D +S +E+R AL+ K+PG DG+P + +L+ + ++R+ N +W ++ IP+ S +V IPKKGDM NYRGIS + ++ K++ II++RL +IL+ Q FR REEC+ + +RRK+ T++ F+D KA+D VPH+AL K+ + G+RG++ I +Y + VR S V N GVRQGCP SP LF+
Sbjct: 402 SRQLVTDSETKAEVWAAHFEELARDSTGNSRSAEKWRDI-GSDSTEVFTECDTPLSWTEIRAALKSTPNNKSPGSDGIPSEAWKLVQDEDEPTSPFAKLLLRLINGIWDAEKIPKQLDPSVVVPIPKKGDMRESNNYRGISLIPTLSKVVSKIISRRLCKIDNKYNILAKEQAGFRSREECVAQATTLYEVVRRRKISGLSTWIGFIDFAKAYDRVPHQALLRKIKNSGIRGKLYRMIEALYRSPKMCVRVGDRLSKIVEYNCGVRQGCPASPLLFD 677
BLAST of mRNA_H-paniculata_contig28798.7847.1 vs. uniprot
Match: A0A507CUH4_9FUNG (Reverse transcriptase domain-containing protein n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507CUH4_9FUNG) HSP 1 Score: 168 bits (426), Expect = 1.010e-43 Identity = 96/281 (34.16%), Postives = 159/281 (56.58%), Query Frame = 1
Query: 22 GELLARTPQIRDAWAIYYGRLATDATGNSRLRTKWESWPASPSLPHLKQLDED--ISDSEVRVALQKMKRYKAPGEDGVPVDFSRLLGYHPDQPII---MGDAIVRMTNVMWKSQIIPEMWTKSTIVSIPKKGDMTIMGNYRGISFMSSVLKILVVIIAQRLSDALEGASILSPAQGSFRRREECI--------ICQRRKLREQKTFLTFVDLKKAHDTVPHEALFGKLNHYGVRGRMSGFIREVYARSTISVRCSGGNSPSVRLNRGVRQGCPLSPTLFN 825
G++ I D W +Y +LA ++ N R WE+ S L L +L+ + +S SE+R + M++ K+ GEDG+P ++ ++ D + + I ++ M+++ IP W + +V++PKKGD+ NYRGI+ ++ +KIL +I+ R+ LE ++ L AQ FR REEC+ +C+RR+ + T+ FVD +KA+DTVPH ALF KL+ G+RG+ I +Y+ +++ + S V++ +GVRQG PLS TLF+
Sbjct: 185 GDMKTSDSDIADIWIEHYRKLAQESRENFRSAEYWET---SQQLTKLSELEVNGPLSWSEIRGVIAGMRKNKSAGEDGLPAEWYKVCLTEDDDEVPKSKLAIVIYKLIGKMFENGHIPPAWNSAPVVAVPKKGDLGDKDNYRGIALINCFIKILTRVISNRIMSQLESSNRLCVAQAGFRSREECVAQTVALWDVCERRRAVGKPTYALFVDFQKAYDTVPHGALFAKLSAIGIRGKCLRIIESLYSSASLRAKVGDHLSKEVKIEKGVRQGDPLSTTLFD 462
BLAST of mRNA_H-paniculata_contig28798.7847.1 vs. uniprot
Match: A0A1R1XWS1_9FUNG (Transposon TX1 protein (Fragment) n=2 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1XWS1_9FUNG) HSP 1 Score: 166 bits (421), Expect = 1.980e-43 Identity = 98/277 (35.38%), Postives = 154/277 (55.60%), Query Frame = 1
Query: 25 ELLARTPQIRDAWAIYYGRLATDATGNSRLRTKWESWPASPSLPHLKQLDEDISDSEVRVALQKMKRYKAPGEDGVPVDFSRLLGYH--PDQPIIMGDAIVRMTNVMWKSQIIPEMWTKSTIVSIPKKGDMTIMGNYRGISFMSSVLKILVVIIAQRLSDALEGASILSPAQGSFRRREECI--------ICQRRKLREQKTFLTFVDLKKAHDTVPHEALFGKLNHYGVRGRMSGFIREVYARSTISVRCSGGNSPSVRLNRGVRQGCPLSPTLFN 825
+L+ + D WA ++ LA D TGNSR+ KW+S + + K+ D ++ +E+ AL+ K+PG DGVP + +L+ + P+ P I ++ + +W ++ IP+ S I+ IPKKGDM N+RGIS + ++ K++ +IA+RL D +IL+ Q FR REEC+ + +RRK+ T++ F+D KA+D VPH+AL K+ + G+ G++ I +Y + VR S V N GVRQGCP SP LF+
Sbjct: 381 KLITDAEEKADTWATHFEGLAKDNTGNSRIAKKWKSLERTSEI--YKECDIQLTWTEICAALKSTPNNKSPGFDGVPSEVWKLVQHEDVPNSPF--AKIIHKLISGIWDTERIPKQMDPSVIIPIPKKGDMRDPNNFRGISLIPTLAKVVSKVIARRLCDIDNKYNILAKEQAGFRSREECVAQATTLYEVVRRRKISGLSTWVGFIDFAKAYDRVPHQALLCKIKNSGIGGKLYRMIEALYRSPKMCVRVGDKISKLVEYNCGVRQGCPASPLLFD 653
BLAST of mRNA_H-paniculata_contig28798.7847.1 vs. uniprot
Match: A0A1R1Y7R2_9FUNG (Putative RNA-directed DNA polymerase from transposon BS n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1Y7R2_9FUNG) HSP 1 Score: 167 bits (422), Expect = 3.890e-43 Identity = 96/275 (34.91%), Postives = 149/275 (54.18%), Query Frame = 1
Query: 25 ELLARTPQIRDAWAIYYGRLATDATGNSRLRTKWESWPASPSLPHLKQLDEDISDSEVRVALQKMKRYKAPGEDGVPVDFSRLLGYHPDQPIIMGDAIVRMTNVMWKSQIIPEMWTKSTIVSIPKKGDMTIMGNYRGISFMSSVLKILVVIIAQRLSDALEGASILSPAQGSFRRREECI--------ICQRRKLREQKTFLTFVDLKKAHDTVPHEALFGKLNHYGVRGRMSGFIREVYARSTISVRCSGGNSPSVRLNRGVRQGCPLSPTLFN 825
+L+ + + WA ++ LA D+TGNSR KW + + + D +S +E+ AL+ K+PG DG+P + +++ Y + + I+R+ +W ++ IP+ S ++ IPKKGD+ NYRGIS + ++ K+L IIA+RL SIL+ Q FR REEC+ + +RRK+ T++ F+D KA+D VPHEAL K+ G+ G++ I +Y + VR S +V N GVRQGCP SP LF+
Sbjct: 342 QLITDSEAKAEVWASHFEELAKDSTGNSRSAKKWRDIGKNYTA-EFTECDTPLSWAEICAALKSTPNNKSPGSDGIPSEVWKMVQYEDEPTSPLAKLILRLITGIWDAEKIPKQLDPSVVIPIPKKGDIRDPNNYRGISLIPTLSKVLSKIIARRLCKIDNKYSILAKEQAGFRTREECVAQATTLYEVVRRRKISGLSTWIGFIDFAKAYDRVPHEALLRKIKTAGIGGKLYRVIEALYRSPKMCVRVGDRLSKTVDYNCGVRQGCPASPMLFD 615
BLAST of mRNA_H-paniculata_contig28798.7847.1 vs. uniprot
Match: A0A1Y1S8L6_9MICR (LIN1 n=1 Tax=Enterospora canceri TaxID=1081671 RepID=A0A1Y1S8L6_9MICR) HSP 1 Score: 166 bits (419), Expect = 1.050e-42 Identity = 96/278 (34.53%), Postives = 148/278 (53.24%), Query Frame = 1
Query: 19 SGELLARTPQIRDAWAIYYGRLATDATGNSRLRTKWES-WPASPSLPHLKQLDEDISDSEVRVALQKMKRYKAPGEDGVPVDFSRLLGYHPDQPIIMGDAIVRMTNVMWKSQIIPEMWTKSTIVSIPKKGDMTIMGNYRGISFMSSVLKILVVIIAQRLSDALEGASILSPAQGSFRRREECI--------ICQRRKLREQKTFLTFVDLKKAHDTVPHEALFGKLNHYGVRGRMSGFIREVYARSTISVRCSGGNSPSVRLNRGVRQGCPLSPTLFN 825
+ ++ T + + W+ ++G LA D TGNSR KW+ P P + +E + S+V AL+++ R KA G DG+P + +L+ + + AI + N MW +PE T + +V IPKKGD++ NYRGIS + +LK++ I RL+ +E +++ Q FR REEC+ RR + T+ F+D KA+D VPH L K+ G+ G + I+ +Y + + VR SG S V ++GVRQGCP SP LF+
Sbjct: 533 NNRIVYATSEKQVVWSTHFGNLAVDETGNSRCYDKWKIILPCEEDRPVHQGCNEQLEWSDVVTALKQLPRNKACGMDGIPGELFKLVENEINPETRLAKAIWDIVNTMWIRAEVPECLTAAAVVPIPKKGDLSDPDNYRGISLIPVILKLVSKIATNRLTAIVETNNLIRKEQAGFRSREECVGQATAMYEAVGRRAADGKTTYALFIDFSKAYDRVPHAGLLRKIESMGIGGHLLKVIKALYDKPKLCVRVSGSYSGMVAYDKGVRQGCPASPILFD 810
BLAST of mRNA_H-paniculata_contig28798.7847.1 vs. uniprot
Match: A0A1R1X4V9_9FUNG (Putative RNA-directed DNA polymerase from transposon BS n=2 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1X4V9_9FUNG) HSP 1 Score: 165 bits (418), Expect = 1.350e-42 Identity = 96/275 (34.91%), Postives = 144/275 (52.36%), Query Frame = 1
Query: 25 ELLARTPQIRDAWAIYYGRLATDATGNSRLRTKWESWPASPSLPHLKQLDEDISDSEVRVALQKMKRYKAPGEDGVPVDFSRLLGYHPDQPIIMGDAIVRMTNVMWKSQIIPEMWTKSTIVSIPKKGDMTIMGNYRGISFMSSVLKILVVIIAQRLSDALEGASILSPAQGSFRRREECI--------ICQRRKLREQKTFLTFVDLKKAHDTVPHEALFGKLNHYGVRGRMSGFIREVYARSTISVRCSGGNSPSVRLNRGVRQGCPLSPTLFN 825
+L+ + + + WA ++ LA D+TGNSR KW + S + D +S E+ AL+ K+PG DG+P + + + + + + R+ +W ++ IPE S +V IPKKGDM NYRGIS + ++ K++ II +RL IL+ Q FR REEC+ + +RRK+ T++ F+D KA+D VPHEAL K+ G+ G++ I +Y + VR G S V N GVRQGCP SP LF+
Sbjct: 382 KLVTESEKKAEVWAAHFEELAKDSTGNSRSAEKWHGM-GNDSAGVFTECDTPLSWDEICAALKSTPNKKSPGYDGIPSEAWKTVQHEIEPTSPFAKVLFRLIKEIWDTESIPEQLDASVVVPIPKKGDMREPNNYRGISLIPTLSKVVSKIIVRRLGKIDNKYDILAKEQAGFRSREECVAQATTLYEVVRRRKISGLSTWIGFIDFAKAYDRVPHEALLKKIRAGGIGGKVHRIIEALYRSPKMCVRIGGQLSKLVEYNCGVRQGCPASPILFD 655 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28798.7847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig28798.7847.1 >prot_H-paniculata_contig28798.7847.1 ID=prot_H-paniculata_contig28798.7847.1|Name=mRNA_H-paniculata_contig28798.7847.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=274bp MCHPDSGELLARTPQIRDAWAIYYGRLATDATGNSRLRTKWESWPASPSLback to top mRNA from alignment at H-paniculata_contig28798:2..850- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig28798.7847.1 ID=mRNA_H-paniculata_contig28798.7847.1|Name=mRNA_H-paniculata_contig28798.7847.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=849bp|location=Sequence derived from alignment at H-paniculata_contig28798:2..850- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig28798:2..850- >mRNA_H-paniculata_contig28798.7847.1 ID=mRNA_H-paniculata_contig28798.7847.1|Name=mRNA_H-paniculata_contig28798.7847.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1644bp|location=Sequence derived from alignment at H-paniculata_contig28798:2..850- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |