mRNA_H-paniculata_contig28798.7847.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28798.7847.1
Unique NamemRNA_H-paniculata_contig28798.7847.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig28798.7847.1 vs. uniprot
Match: A0A6H5L5H7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5H7_9PHAE)

HSP 1 Score: 276 bits (706), Expect = 9.440e-82
Identity = 147/283 (51.94%), Postives = 182/283 (64.31%), Query Frame = 1
Query:    1 PMCHPDSGELLARTPQIRDAWAIYYGRLATDATGNSRLRTKWESWPASPSLPHLKQLDEDISDSEVRVALQKMKRYKAPGEDGVPVDFSRLLGYHPDQPIIMGDAIVRMTNVMWKSQIIPEMWTKSTIVSIPKKGDMTIMGNYRGISFMSSVLKILVVIIAQRLSDALEGASILSPAQGSFRRREECI--------ICQRRKLREQKTFLTFVDLKKAHDTVPHEALFGKLNHYGVRGRMSGFIREVYARSTISVRCSGGNSPSVRLNRGVRQGCPLSPTLFN 825
            P+ HPDS  LL     I  AW  +Y RLA D TGNSR   KW +W A+P   H+ +LD  I   E+  AL ++KR+K+PG DGVP DF  L G        MG  ++ M N++WK+++IP    +ST+V IPKKGDMT M N+RGIS M++VLK+LV+II+ RL+ A E   + S +Q  FR REEC+        ICQRRK R +  +L FVDLKKA+DTVP EALF KL  YGVRG M  FIR +YA S I+VR     S S  L RGVRQGCPLSP LFN
Sbjct:  440 PVQHPDSRALLTSANDISAAWRTHYQRLAADVTGNSRKSDKWNAWRAAPQRRHMTELDGPILREEMVEALARIKRHKSPGNDGVPADFLELAGGEEGSQSPMGKTVLGMLNLIWKTRVIPTDRRESTVVPIPKKGDMTDMNNHRGISLMNTVLKVLVMIISTRLNSAFERHKLFSQSQAGFRTREECVTQAACLLEICQRRKFRRKSAYLMFVDLKKAYDTVPQEALFAKLVFYGVRGEMLAFIRALYANSKIAVRTGDLLSDSFSLERGVRQGCPLSPVLFN 722          
BLAST of mRNA_H-paniculata_contig28798.7847.1 vs. uniprot
Match: A0A3M2C3P5_9GAMM (Reverse transcriptase domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3M2C3P5_9GAMM)

HSP 1 Score: 194 bits (492), Expect = 1.830e-52
Identity = 123/306 (40.20%), Postives = 167/306 (54.58%), Query Frame = 1
Query:    1 PMCHPDSGELLARTPQIRDAWAIYYGRLATDATGNSRLRTKWESWPAS-PSLPHLKQLDEDISDSEVRVALQKMKRYKAPGEDGVPVDFSRLL---------------GYHPDQPIIMGDAIVRMTNVMWKSQIIPEMWTKSTIVSIPK-KGDMTIMGNYRGISFMSSVLKILVVIIAQRLSDALEGA--SILSPAQGSFRRREECI--------ICQRRKLREQKTFLTFVDLKKAHDTVPHEALFGKLNHYGVRGRMSGFIREVYARSTISVR----CSGGNSPSVRLNRGVRQGCPLSPTLFN 825
            P+ HP S E+L    +I  AW +Y+G LA D TG+      WE   +S PSLP L+ L+  +   EVR AL  MK  KAPG DGV  DF +L                  HP  P  M   + ++   MW  + +P +W  + +V I K +GD   M NYRGIS +  VLK+L  II +RL+  ++      L   Q  FR REEC+        + +RR++ +  ++L F+DLKKA+DTVPH ALF KL   GVRG+   FI+ +Y  S++S R    C    SP+  L RG+RQGCP+SP LFN
Sbjct:  617 PIKHPHSKEVLTDPLEIAQAWNLYFGELAEDRTGHQSDTAHWERVGSSIPSLPPLEGLNRPLQWKEVRAALLSMKNGKAPGCDGVSADFLKLCCGQSLEEEDDDGDDAETHPPNP--MAAVLFKLLCAMWAQETVPSVWNMAEVVPIFKNRGDQLEMENYRGISLIPVVLKLLCTIITRRLASMIDDQINPRLHKEQAGFRSREECLGHIVALYEVLRRRQIMQLPSYLAFIDLKKAYDTVPHGALFHKLEKIGVRGKCLRFIQNLYRHSSVSFRAPSDCCRNISPAP-LRRGLRQGCPMSPLLFN 919          
BLAST of mRNA_H-paniculata_contig28798.7847.1 vs. uniprot
Match: A0A7S1SJ55_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SJ55_9CHLO)

HSP 1 Score: 179 bits (455), Expect = 1.470e-47
Identity = 105/291 (36.08%), Postives = 155/291 (53.26%), Query Frame = 1
Query:    1 PMCHPDSGELLARTPQIRDAWAIYYGRLATDA-TGNSRLRTKWESWP----ASPSLPHLKQLDEDISDSEVRVALQKMKRYKAPGEDGVPVDFSRLLGYHPDQPIIMGDAIVRMTNVMWKSQIIPEMWTKSTIVSIPKKGDMTIMGNYRGISFMSSVLKILVVIIAQRLSDALEGASILSPAQGSFRRREECI--------ICQRRKLREQKTFLTFVDLKKAHDTVPHEALFGKLNHYGVRGRMSGFIREVYARSTISVRCS---GGNSPSVRLNRGVRQGCPLSPTLFN 825
            P+  P SG L     +I   WA +Y  L  D      R     E+W       P  P L  ++  I   E+  AL+++   KA G DG+  +  +L  Y PD P   G +++ + N +W ++ +P+ W  S +VSI KKGD+T+M NYRGIS M +++K+L+ ++ QRL D  +   ++   QG F   EEC         I  RR+     T+  F+DL+KA+DT+PHE LF KL   G+ G M  F++ +Y  ST+ V+     G  S  + + RG+RQGCP SP LFN
Sbjct:  332 PVHDPTSGVLHTEPGEINACWARHYRELLRDPHPAACRATIYHEAWERRRGGRPPSPALDGINGPIGGGELCKALKRLNNNKASGVDGITAETLKLAIYAPDSPF--GKSLLELMNNIWTTKCVPKQWCSSAVVSILKKGDVTVMDNYRGISIMGALIKLLMTVVTQRLQDVCQTNKLIRRWQGGFMPGEECPLQVASIFDIAGRRQALGLPTYAGFIDLRKAYDTIPHELLFSKLEANGITGHMLSFLKALYRDSTVQVKTGEAPGILSDPIPIERGLRQGCPASPILFN 620          
BLAST of mRNA_H-paniculata_contig28798.7847.1 vs. uniprot
Match: A0A1J5WUS4_9MICR (Reverse transcriptase domain-containing protein n=1 Tax=Amphiamblys sp. WSBS2006 TaxID=1866961 RepID=A0A1J5WUS4_9MICR)

HSP 1 Score: 173 bits (438), Expect = 2.760e-45
Identity = 111/284 (39.08%), Postives = 154/284 (54.23%), Query Frame = 1
Query:   16 DSGELLARTPQ-IRDAWAIYYGRLATDATGNSRLRTKWESWPASPSLP--HLKQLDEDISDSEVRVALQKMKRYKAPGEDGVPVDFSRLLGYHPDQPIIMGDAIVRMTNVMWKSQIIPEMWTKSTIVSIPKKGDMTIMGNYRGISFMSSVLKILVVIIAQRLSDALEGASILSPAQGSFRRREECI--------ICQRRKLREQKTFLTFVDLKKAHDTVPHEALFGKL-NHYGVRG--RMSGFIREVYARSTISVRCSGGNSPSVRLNRGVRQGCPLSPTLFN 825
            D+G  L   P+ I + W  +Y  +  D TG+SR R+ WE+ P     P   + +LDE IS+ EV  AL  MK +KA G DGV  +  ++     D P  M  +IV++    W   +I E W  + +V+IPKKG   +  NYRGIS +   LK+L  I A RL+D +E   +    Q  FRR EEC+          QRR   ++ T   F+D +KA+D VPHEA+  KL +  G  G  +M  F+R +Y    +S+R  G  +   RL  G+RQGCPLSPTLFN
Sbjct:  336 DAGGTLQVVPEKIVEVWEAHYREMFRDKTGHSRDRSYWENKPIRERGPGERVSKLDEAISEEEVAEALSGMKNWKAAGPDGVIPEILKIAA--EDCP--MRKSIVKVLQKAWDEGVIDEEWELAEVVTIPKKGKAELTENYRGISLLPVCLKLLCTIAASRLNDYMEENGLFDERQAGFRRGEECLGHVAYLVETAQRRSREKKATHACFIDFRKAYDRVPHEAMLRKLRSETGTDGDGKMMRFVRALYENPRLSIRADGVKN-ECRLEVGLRQGCPLSPTLFN 614          
BLAST of mRNA_H-paniculata_contig28798.7847.1 vs. uniprot
Match: A0A1R1YAQ4_9FUNG (RNA-directed DNA polymerase from mobile element jockey (Fragment) n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1YAQ4_9FUNG)

HSP 1 Score: 172 bits (436), Expect = 5.230e-45
Identity = 99/277 (35.74%), Postives = 151/277 (54.51%), Query Frame = 1
Query:   19 SGELLARTPQIRDAWAIYYGRLATDATGNSRLRTKWESWPASPSLPHLKQLDEDISDSEVRVALQKMKRYKAPGEDGVPVDFSRLLGYHPDQPIIMGDAIVRMTNVMWKSQIIPEMWTKSTIVSIPKKGDMTIMGNYRGISFMSSVLKILVVIIAQRLSDALEGASILSPAQGSFRRREECI--------ICQRRKLREQKTFLTFVDLKKAHDTVPHEALFGKLNHYGVRGRMSGFIREVYARSTISVRCSGGNSPSVRLNRGVRQGCPLSPTLFN 825
            S +L+  +    + WA ++  LA D+TGNSR   KW     S S     + D  +S +E+R AL+     K+PG DG+P +  +L+    +        ++R+ N +W ++ IP+    S +V IPKKGDM    NYRGIS + ++ K++  II++RL       +IL+  Q  FR REEC+        + +RRK+    T++ F+D  KA+D VPH+AL  K+ + G+RG++   I  +Y    + VR     S  V  N GVRQGCP SP LF+
Sbjct:  402 SRQLVTDSETKAEVWAAHFEELARDSTGNSRSAEKWRDI-GSDSTEVFTECDTPLSWTEIRAALKSTPNNKSPGSDGIPSEAWKLVQDEDEPTSPFAKLLLRLINGIWDAEKIPKQLDPSVVVPIPKKGDMRESNNYRGISLIPTLSKVVSKIISRRLCKIDNKYNILAKEQAGFRSREECVAQATTLYEVVRRRKISGLSTWIGFIDFAKAYDRVPHQALLRKIKNSGIRGKLYRMIEALYRSPKMCVRVGDRLSKIVEYNCGVRQGCPASPLLFD 677          
BLAST of mRNA_H-paniculata_contig28798.7847.1 vs. uniprot
Match: A0A507CUH4_9FUNG (Reverse transcriptase domain-containing protein n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507CUH4_9FUNG)

HSP 1 Score: 168 bits (426), Expect = 1.010e-43
Identity = 96/281 (34.16%), Postives = 159/281 (56.58%), Query Frame = 1
Query:   22 GELLARTPQIRDAWAIYYGRLATDATGNSRLRTKWESWPASPSLPHLKQLDED--ISDSEVRVALQKMKRYKAPGEDGVPVDFSRLLGYHPDQPII---MGDAIVRMTNVMWKSQIIPEMWTKSTIVSIPKKGDMTIMGNYRGISFMSSVLKILVVIIAQRLSDALEGASILSPAQGSFRRREECI--------ICQRRKLREQKTFLTFVDLKKAHDTVPHEALFGKLNHYGVRGRMSGFIREVYARSTISVRCSGGNSPSVRLNRGVRQGCPLSPTLFN 825
            G++      I D W  +Y +LA ++  N R    WE+   S  L  L +L+ +  +S SE+R  +  M++ K+ GEDG+P ++ ++     D  +    +   I ++   M+++  IP  W  + +V++PKKGD+    NYRGI+ ++  +KIL  +I+ R+   LE ++ L  AQ  FR REEC+        +C+RR+   + T+  FVD +KA+DTVPH ALF KL+  G+RG+    I  +Y+ +++  +     S  V++ +GVRQG PLS TLF+
Sbjct:  185 GDMKTSDSDIADIWIEHYRKLAQESRENFRSAEYWET---SQQLTKLSELEVNGPLSWSEIRGVIAGMRKNKSAGEDGLPAEWYKVCLTEDDDEVPKSKLAIVIYKLIGKMFENGHIPPAWNSAPVVAVPKKGDLGDKDNYRGIALINCFIKILTRVISNRIMSQLESSNRLCVAQAGFRSREECVAQTVALWDVCERRRAVGKPTYALFVDFQKAYDTVPHGALFAKLSAIGIRGKCLRIIESLYSSASLRAKVGDHLSKEVKIEKGVRQGDPLSTTLFD 462          
BLAST of mRNA_H-paniculata_contig28798.7847.1 vs. uniprot
Match: A0A1R1XWS1_9FUNG (Transposon TX1 protein (Fragment) n=2 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1XWS1_9FUNG)

HSP 1 Score: 166 bits (421), Expect = 1.980e-43
Identity = 98/277 (35.38%), Postives = 154/277 (55.60%), Query Frame = 1
Query:   25 ELLARTPQIRDAWAIYYGRLATDATGNSRLRTKWESWPASPSLPHLKQLDEDISDSEVRVALQKMKRYKAPGEDGVPVDFSRLLGYH--PDQPIIMGDAIVRMTNVMWKSQIIPEMWTKSTIVSIPKKGDMTIMGNYRGISFMSSVLKILVVIIAQRLSDALEGASILSPAQGSFRRREECI--------ICQRRKLREQKTFLTFVDLKKAHDTVPHEALFGKLNHYGVRGRMSGFIREVYARSTISVRCSGGNSPSVRLNRGVRQGCPLSPTLFN 825
            +L+    +  D WA ++  LA D TGNSR+  KW+S   +  +   K+ D  ++ +E+  AL+     K+PG DGVP +  +L+ +   P+ P      I ++ + +W ++ IP+    S I+ IPKKGDM    N+RGIS + ++ K++  +IA+RL D     +IL+  Q  FR REEC+        + +RRK+    T++ F+D  KA+D VPH+AL  K+ + G+ G++   I  +Y    + VR     S  V  N GVRQGCP SP LF+
Sbjct:  381 KLITDAEEKADTWATHFEGLAKDNTGNSRIAKKWKSLERTSEI--YKECDIQLTWTEICAALKSTPNNKSPGFDGVPSEVWKLVQHEDVPNSPF--AKIIHKLISGIWDTERIPKQMDPSVIIPIPKKGDMRDPNNFRGISLIPTLAKVVSKVIARRLCDIDNKYNILAKEQAGFRSREECVAQATTLYEVVRRRKISGLSTWVGFIDFAKAYDRVPHQALLCKIKNSGIGGKLYRMIEALYRSPKMCVRVGDKISKLVEYNCGVRQGCPASPLLFD 653          
BLAST of mRNA_H-paniculata_contig28798.7847.1 vs. uniprot
Match: A0A1R1Y7R2_9FUNG (Putative RNA-directed DNA polymerase from transposon BS n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1Y7R2_9FUNG)

HSP 1 Score: 167 bits (422), Expect = 3.890e-43
Identity = 96/275 (34.91%), Postives = 149/275 (54.18%), Query Frame = 1
Query:   25 ELLARTPQIRDAWAIYYGRLATDATGNSRLRTKWESWPASPSLPHLKQLDEDISDSEVRVALQKMKRYKAPGEDGVPVDFSRLLGYHPDQPIIMGDAIVRMTNVMWKSQIIPEMWTKSTIVSIPKKGDMTIMGNYRGISFMSSVLKILVVIIAQRLSDALEGASILSPAQGSFRRREECI--------ICQRRKLREQKTFLTFVDLKKAHDTVPHEALFGKLNHYGVRGRMSGFIREVYARSTISVRCSGGNSPSVRLNRGVRQGCPLSPTLFN 825
            +L+  +    + WA ++  LA D+TGNSR   KW     + +     + D  +S +E+  AL+     K+PG DG+P +  +++ Y  +    +   I+R+   +W ++ IP+    S ++ IPKKGD+    NYRGIS + ++ K+L  IIA+RL       SIL+  Q  FR REEC+        + +RRK+    T++ F+D  KA+D VPHEAL  K+   G+ G++   I  +Y    + VR     S +V  N GVRQGCP SP LF+
Sbjct:  342 QLITDSEAKAEVWASHFEELAKDSTGNSRSAKKWRDIGKNYTA-EFTECDTPLSWAEICAALKSTPNNKSPGSDGIPSEVWKMVQYEDEPTSPLAKLILRLITGIWDAEKIPKQLDPSVVIPIPKKGDIRDPNNYRGISLIPTLSKVLSKIIARRLCKIDNKYSILAKEQAGFRTREECVAQATTLYEVVRRRKISGLSTWIGFIDFAKAYDRVPHEALLRKIKTAGIGGKLYRVIEALYRSPKMCVRVGDRLSKTVDYNCGVRQGCPASPMLFD 615          
BLAST of mRNA_H-paniculata_contig28798.7847.1 vs. uniprot
Match: A0A1Y1S8L6_9MICR (LIN1 n=1 Tax=Enterospora canceri TaxID=1081671 RepID=A0A1Y1S8L6_9MICR)

HSP 1 Score: 166 bits (419), Expect = 1.050e-42
Identity = 96/278 (34.53%), Postives = 148/278 (53.24%), Query Frame = 1
Query:   19 SGELLARTPQIRDAWAIYYGRLATDATGNSRLRTKWES-WPASPSLPHLKQLDEDISDSEVRVALQKMKRYKAPGEDGVPVDFSRLLGYHPDQPIIMGDAIVRMTNVMWKSQIIPEMWTKSTIVSIPKKGDMTIMGNYRGISFMSSVLKILVVIIAQRLSDALEGASILSPAQGSFRRREECI--------ICQRRKLREQKTFLTFVDLKKAHDTVPHEALFGKLNHYGVRGRMSGFIREVYARSTISVRCSGGNSPSVRLNRGVRQGCPLSPTLFN 825
            +  ++  T + +  W+ ++G LA D TGNSR   KW+   P     P  +  +E +  S+V  AL+++ R KA G DG+P +  +L+    +    +  AI  + N MW    +PE  T + +V IPKKGD++   NYRGIS +  +LK++  I   RL+  +E  +++   Q  FR REEC+           RR    + T+  F+D  KA+D VPH  L  K+   G+ G +   I+ +Y +  + VR SG  S  V  ++GVRQGCP SP LF+
Sbjct:  533 NNRIVYATSEKQVVWSTHFGNLAVDETGNSRCYDKWKIILPCEEDRPVHQGCNEQLEWSDVVTALKQLPRNKACGMDGIPGELFKLVENEINPETRLAKAIWDIVNTMWIRAEVPECLTAAAVVPIPKKGDLSDPDNYRGISLIPVILKLVSKIATNRLTAIVETNNLIRKEQAGFRSREECVGQATAMYEAVGRRAADGKTTYALFIDFSKAYDRVPHAGLLRKIESMGIGGHLLKVIKALYDKPKLCVRVSGSYSGMVAYDKGVRQGCPASPILFD 810          
BLAST of mRNA_H-paniculata_contig28798.7847.1 vs. uniprot
Match: A0A1R1X4V9_9FUNG (Putative RNA-directed DNA polymerase from transposon BS n=2 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1X4V9_9FUNG)

HSP 1 Score: 165 bits (418), Expect = 1.350e-42
Identity = 96/275 (34.91%), Postives = 144/275 (52.36%), Query Frame = 1
Query:   25 ELLARTPQIRDAWAIYYGRLATDATGNSRLRTKWESWPASPSLPHLKQLDEDISDSEVRVALQKMKRYKAPGEDGVPVDFSRLLGYHPDQPIIMGDAIVRMTNVMWKSQIIPEMWTKSTIVSIPKKGDMTIMGNYRGISFMSSVLKILVVIIAQRLSDALEGASILSPAQGSFRRREECI--------ICQRRKLREQKTFLTFVDLKKAHDTVPHEALFGKLNHYGVRGRMSGFIREVYARSTISVRCSGGNSPSVRLNRGVRQGCPLSPTLFN 825
            +L+  + +  + WA ++  LA D+TGNSR   KW     + S     + D  +S  E+  AL+     K+PG DG+P +  + + +  +        + R+   +W ++ IPE    S +V IPKKGDM    NYRGIS + ++ K++  II +RL        IL+  Q  FR REEC+        + +RRK+    T++ F+D  KA+D VPHEAL  K+   G+ G++   I  +Y    + VR  G  S  V  N GVRQGCP SP LF+
Sbjct:  382 KLVTESEKKAEVWAAHFEELAKDSTGNSRSAEKWHGM-GNDSAGVFTECDTPLSWDEICAALKSTPNKKSPGYDGIPSEAWKTVQHEIEPTSPFAKVLFRLIKEIWDTESIPEQLDASVVVPIPKKGDMREPNNYRGISLIPTLSKVVSKIIVRRLGKIDNKYDILAKEQAGFRSREECVAQATTLYEVVRRRKISGLSTWIGFIDFAKAYDRVPHEALLKKIRAGGIGGKVHRIIEALYRSPKMCVRIGGQLSKLVEYNCGVRQGCPASPILFD 655          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28798.7847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5H7_9PHAE9.440e-8251.94Reverse transcriptase domain-containing protein n=... [more]
A0A3M2C3P5_9GAMM1.830e-5240.20Reverse transcriptase domain-containing protein n=... [more]
A0A7S1SJ55_9CHLO1.470e-4736.08Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A1J5WUS4_9MICR2.760e-4539.08Reverse transcriptase domain-containing protein n=... [more]
A0A1R1YAQ4_9FUNG5.230e-4535.74RNA-directed DNA polymerase from mobile element jo... [more]
A0A507CUH4_9FUNG1.010e-4334.16Reverse transcriptase domain-containing protein n=... [more]
A0A1R1XWS1_9FUNG1.980e-4335.38Transposon TX1 protein (Fragment) n=2 Tax=Smittium... [more]
A0A1R1Y7R2_9FUNG3.890e-4334.91Putative RNA-directed DNA polymerase from transpos... [more]
A0A1Y1S8L6_9MICR1.050e-4234.53LIN1 n=1 Tax=Enterospora canceri TaxID=1081671 Rep... [more]
A0A1R1X4V9_9FUNG1.350e-4234.91Putative RNA-directed DNA polymerase from transpos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28798contigH-paniculata_contig28798:2..850 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.1
Seed ortholog evalue3.8e-31
Seed eggNOG ortholog45157.CMJ308CT
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ribonuclease H protein
EggNOG OGsKOG1075@1,KOG1075@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size825
Cds size822
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28798.7847.1prot_H-paniculata_contig28798.7847.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28798 2..847 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929876.2038689-CDS-H-paniculata_contig28798:1..2621622929876.2038689-CDS-H-paniculata_contig28798:1..262Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28798 2..262 -
1691481050.492271-CDS-H-paniculata_contig28798:1..2621691481050.492271-CDS-H-paniculata_contig28798:1..262Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28798 2..262 -
1622929876.2191877-CDS-H-paniculata_contig28798:286..8471622929876.2191877-CDS-H-paniculata_contig28798:286..847Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28798 287..847 -
1691481050.5041344-CDS-H-paniculata_contig28798:286..8471691481050.5041344-CDS-H-paniculata_contig28798:286..847Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28798 287..847 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929876.2341416-UTR-H-paniculata_contig28798:847..8501622929876.2341416-UTR-H-paniculata_contig28798:847..850Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28798 848..850 -
1691481050.5144947-UTR-H-paniculata_contig28798:847..8501691481050.5144947-UTR-H-paniculata_contig28798:847..850Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28798 848..850 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28798.7847.1

>prot_H-paniculata_contig28798.7847.1 ID=prot_H-paniculata_contig28798.7847.1|Name=mRNA_H-paniculata_contig28798.7847.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=274bp
MCHPDSGELLARTPQIRDAWAIYYGRLATDATGNSRLRTKWESWPASPSL
PHLKQLDEDISDSEVRVALQKMKRYKAPGEDGVPVDFSRLLGYHPDQPII
MGDAIVRMTNVMWKSQIIPEMWTKSTIVSIPKKGDMTIMGNYRGISFMSS
VLKILVVIIAQRLSDALEGASILSPAQGSFRRREECIICQRRKLREQKTF
LTFVDLKKAHDTVPHEALFGKLNHYGVRGRMSGFIREVYARSTISVRCSG
GNSPSVRLNRGVRQGCPLSPTLFN
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mRNA from alignment at H-paniculata_contig28798:2..850-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28798.7847.1 ID=mRNA_H-paniculata_contig28798.7847.1|Name=mRNA_H-paniculata_contig28798.7847.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=849bp|location=Sequence derived from alignment at H-paniculata_contig28798:2..850- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCATGTGCCACCCGGACTCAGGGGAGCTCCTAGCTAGGACTCCTCAGAT AAGGGATGCATGGGCGATATACTATGGGAGACTGGCAACGGATGCTACGG GGAATAGCAGATTGCGTACTAAGTGGGAATCTTGGCCTGCAAGCCCGAGC CTCCCGCACCTCAAGCAATTGGATGAGGATATATCCGATTCTGAAGTGAG AGTAGCACTTCAGAAAATGAAGAGATATAAAGCCCCGGGGGAGGATGGAG TGCCAGTCGACTTCTCAAGACTCCTGGGATATCATCCGGACCAACCGATT ATCATGGGAGACGCCATAGTGAGAATGACCAATGTCATGTGGAAAAGCCA AATCATACCGGAAATGTGGACAAAGTCTACCATAGTCTCTATCCCAAAGA AGGGTGATATGACAATCATGGGTAACTACCGCGGGATATCTTTCATGAGT TCGGTACTAAAGATACTGGTGGTGATCATAGCCCAGAGACTAAGCGACGC GTTAGAAGGTGCTAGTATACTAAGTCCAGCCCAAGGGAGCTTTCGGCGTA GGGAAGAATGTATAGTATAAGCAGGATGCCTACTCGAGATCTGCCAGAGA AGAAAACTTCGTGAACAAAAGACTTTCCTAACATTTGTAGACCTTAAGAA AGCGCATGATACCGTCCCACACGAAGCTCTTTTTGGTAAACTAAACCACT ATGGTGTCCGAGGTAGGATGTCAGGGTTTATCCGAGAGGTATATGCTAGG AGTACTATTTCTGTTCGGTGTAGCGGGGGCAACTCGCCCTCAGTACGCCT GAATAGAGGAGTGAGGCAAGGGTGCCCACTGTCTCCGACTTTGTTCAAT
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Coding sequence (CDS) from alignment at H-paniculata_contig28798:2..850-

>mRNA_H-paniculata_contig28798.7847.1 ID=mRNA_H-paniculata_contig28798.7847.1|Name=mRNA_H-paniculata_contig28798.7847.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1644bp|location=Sequence derived from alignment at H-paniculata_contig28798:2..850- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCCACCCGGACTCAGGGGAGCTCCTAGCTAGGACTCCTCAGATAAG
GGATGCATGGGCGATATACTATGGGAGACTGGCAACGGATGCTACGGGGA
ATAGCAGATTGCGTACTAAGTGGGAATCTTGGCCTGCAAGCCCGAGCCTC
CCGCACCTCAAGCAATTGGATGAGGATATATCCGATTCTGAAGTGAGAGT
AGCACTTCAGAAAATGAAGAGATATAAAGCCCCGGGGGAGGATGGAGTGC
CAGTCGACTTCTCAAGACTCCTGGGATATCATCCGGACCAACCGATTATC
ATGGGAGACGCCATAGTGAGAATGACCAATGTCATGTGGAAAAGCCAAAT
CATACCGGAAATGTGGACAAAGTCTACCATAGTCTCTATCCCAAAGAAGG
GTGATATGACAATCATGGGTAACTACCGCGGGATATCTTTCATGAGTTCG
GTACTAAAGATACTGGTGGTGATCATAGCCCAGAGACTAAGCGACGCGTT
AGAAGGTGCTAGTATACTAAGTCCAGCCCAAGGGAGCTTTCGGCGTAGGG
AAGAATGTATAATGTGCCACCCGGACTCAGGGGAGCTCCTAGCTAGGACT
CCTCAGATAAGGGATGCATGGGCGATATACTATGGGAGACTGGCAACGGA
TGCTACGGGGAATAGCAGATTGCGTACTAAGTGGGAATCTTGGCCTGCAA
GCCCGAGCCTCCCGCACCTCAAGCAATTGGATGAGGATATATCCGATTCT
GAAGTGAGAGTAGCACTTCAGAAAATGAAGAGATATAAAGCCCCGGGGGA
GGATGGAGTGCCAGTCGACTTCTCAAGACTCCTGGGATATCATCCGGACC
AACCGATTATCATGGGAGACGCCATAGTGAGAATGACCAATGTCATGTGG
AAAAGCCAAATCATACCGGAAATGTGGACAAAGTCTACCATAGTCTCTAT
CCCAAAGAAGGGTGATATGACAATCATGGGTAACTACCGCGGGATATCTT
TCATGAGTTCGGTACTAAAGATACTGGTGGTGATCATAGCCCAGAGACTA
AGCGACGCGTTAGAAGGTGCTAGTATACTAAGTCCAGCCCAAGGGAGCTT
TCGGCGTAGGGAAGAATGTATAATCTGCCAGAGAAGAAAACTTCGTGAAC
AAAAGACTTTCCTAACATTTGTAGACCTTAAGAAAGCGCATGATACCGTC
CCACACGAAGCTCTTTTTGGTAAACTAAACCACTATGGTGTCCGAGGTAG
GATGTCAGGGTTTATCCGAGAGGTATATGCTAGGAGTACTATTTCTGTTC
GGTGTAGCGGGGGCAACTCGCCCTCAGTACGCCTGAATAGAGGAGTGAGG
CAAGGGTGCCCACTGTCTCCGACTTTGTTCAATATCTGCCAGAGAAGAAA
ACTTCGTGAACAAAAGACTTTCCTAACATTTGTAGACCTTAAGAAAGCGC
ATGATACCGTCCCACACGAAGCTCTTTTTGGTAAACTAAACCACTATGGT
GTCCGAGGTAGGATGTCAGGGTTTATCCGAGAGGTATATGCTAGGAGTAC
TATTTCTGTTCGGTGTAGCGGGGGCAACTCGCCCTCAGTACGCCTGAATA
GAGGAGTGAGGCAAGGGTGCCCACTGTCTCCGACTTTGTTCAAT
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