mRNA_H-paniculata_contig2872.7828.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2872.7828.1
Unique NamemRNA_H-paniculata_contig2872.7828.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2872.7828.1 vs. uniprot
Match: D8LKH4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKH4_ECTSI)

HSP 1 Score: 273 bits (698), Expect = 1.690e-91
Identity = 129/161 (80.12%), Postives = 146/161 (90.68%), Query Frame = 1
Query:    1 IRTRLKLIQAYITSLEYNYTGEEFFVKKKDRGFRHVSSTAKLIIREALPIQCVDAVFLGAYLTSKMAEVDRFPVCFRSSLDGRVFRHIILAVRSHGVWGALGLSRRDTLMHKELRYTSFAGLMADFRASYTGSWHRLEQLWVGFPLPHDISSNVPVKWKVM 483
            +R +LK IQ+YITSLEYNYTGE FFVKKKDRGFRHV+STAKLIIREALPIQCV+AVF+GAYLT+ MAEVDRFPVCFRSSLDGRV+RHI+LAVRS G WG+LGLSRRD LM+KEL+Y  F+ L+ DFR SY  SWHRLEQ+WVGFPLPHDISSNV +KWKV+
Sbjct:    1 MRGKLKHIQSYITSLEYNYTGEAFFVKKKDRGFRHVTSTAKLIIREALPIQCVEAVFVGAYLTADMAEVDRFPVCFRSSLDGRVYRHIVLAVRSGGKWGSLGLSRRDKLMYKELKYDLFSKLVGDFRESYASSWHRLEQVWVGFPLPHDISSNVAIKWKVL 161          
BLAST of mRNA_H-paniculata_contig2872.7828.1 vs. uniprot
Match: A0A6H5JJ50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ50_9PHAE)

HSP 1 Score: 237 bits (604), Expect = 6.320e-77
Identity = 118/175 (67.43%), Postives = 132/175 (75.43%), Query Frame = 1
Query:   49 YNYTGEEFFVKKKDRGFRHVSSTAKLIIREALPIQCVDAVFLGAYLTSKMAE------------------------------VDRFPVCFRSSLDGRVFRHIILAVRSHGVWGALGLSRRDTLMHKELRYTSFAGLMADFRASYTGSWHRLEQLWVGFPLPHDISSNVPVKWKVM 483
            YNYTGE FFVKKKDRGFRHV+STAK IIREALPIQCV+AVF+GAYLT+ MAE                              VDRFPVCFRSSLDGRV+RHI+LAVRS G WG+LGLSRRDTLM+KEL+Y  F+ L+ DFR SY  +WHRLEQ+WVGFPLPHDISSNV VKWKV+
Sbjct:    5 YNYTGEAFFVKKKDRGFRHVTSTAKQIIREALPIQCVEAVFVGAYLTADMAEAGPLFFQTLADSSTLSPYLRRFLLPGYMVGVDRFPVCFRSSLDGRVYRHIVLAVRSGGKWGSLGLSRRDTLMYKELKYELFSKLVGDFRESYASNWHRLEQVWVGFPLPHDISSNVAVKWKVL 179          
BLAST of mRNA_H-paniculata_contig2872.7828.1 vs. uniprot
Match: A0A835YRP7_9STRA (Vasohibin-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRP7_9STRA)

HSP 1 Score: 192 bits (489), Expect = 3.450e-59
Identity = 86/160 (53.75%), Postives = 123/160 (76.88%), Query Frame = 1
Query:    1 IRTRLKLIQAYITSLEYNYTGEEFFVKKKDRGFRHVSSTAKLIIREALPIQCVDAVFLGAYLTSKMAEVDRFPVCFRSSLDGRVFRHIILAVRSHGVWGALGLSRRDTLMHKELRYTSFAGLMADFRASYTGSWHRLEQLWVGFPLPHDISSNVPVKWKV 480
            +R +LK +Q YI + EYN+TG+ ++  KK RGF HV++ A+ I+REALPIQCV+A FLGAYLT  + +V+R+P+ F+S+L+G   RHI+LAV S G WGALG+SRRD L +KEL+Y+S   L+A+F A+YT  WH+L+ +++G PLP + S N P++WKV
Sbjct:   31 LRDKLKQLQKYIEAFEYNHTGKCYYSTKKFRGFAHVANVAQDIMREALPIQCVEATFLGAYLTCDLRDVERYPLSFKSALEGHEHRHIVLAVTSGGKWGALGISRRDCLAYKELKYSSLGALVAEFAAAYTSCWHQLQAIYLGLPLPRNPSCNAPIRWKV 190          
BLAST of mRNA_H-paniculata_contig2872.7828.1 vs. uniprot
Match: K3X8V2_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X8V2_GLOUD)

HSP 1 Score: 177 bits (449), Expect = 1.560e-51
Identity = 91/186 (48.92%), Postives = 124/186 (66.67%), Query Frame = 1
Query:    1 IRTRLKLIQAYITSLEYNYTGEEFFVKKKDRGFRHVSSTAKLIIREALPIQCVDAVFLGAYLTSKMAEVDRFPVCFRSSLDGRVFRHIILAVR-SHGVWGALGLSRRDTLMHKELRYTSFAGLMADFRASYTGSWHRLEQLWVGFPLPHDISSNVPVKWKVMRASVGTDSEWESAVPDLDRFVSCA 555
            I+TRL  IQ  I +LEYNYTG ++F   K+R F+ + STAK I+ E LPIQC++AVFL +YLT+  ++++RFP+ F+S     V RHIILAVR  H  WGALGLSR D LM+KEL+Y S + L+ DF   +   +HR+ +++VGFP  HDI S+  V+W+VM  S+  + EW  A    D F   A
Sbjct:   39 IKTRLIGIQHVINTLEYNYTGTQYFDVNKNRSFKSIVSTAKDIVNETLPIQCLEAVFLASYLTANASDLERFPISFKSIAGTNVHRHIILAVRYQHNKWGALGLSRSDKLMYKELKYASLSELIQDFCHEFELLYHRVLKVYVGFPFSHDIHSSEKVEWRVMNISLEFN-EWTDAAQHFDSFAKDA 223          
BLAST of mRNA_H-paniculata_contig2872.7828.1 vs. uniprot
Match: A0A2D4BXV4_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BXV4_PYTIN)

HSP 1 Score: 174 bits (441), Expect = 1.770e-49
Identity = 88/188 (46.81%), Postives = 117/188 (62.23%), Query Frame = 1
Query:    1 IRTRLKLIQAYITSLEYNYTGEEFFVKKKDRGFRHVSSTAKLIIREALPIQCVDAVFLGAYLTSKMAEVDRFPVCFRSSLDGRVFRHIILAVRSHGVWGALGLSRRDTLMHKELRYTSFAGLMADFRASYTGSWHRLEQLWVGFPLPHDISSNVPVKWKVMRASVGTDSEWESAVPDLDRFVSCASCL 564
            I+TRL  +Q Y+ SLEYNYTG  +F   K+R F+ + +TAK I  E LPIQC++AVFL AY+T+   +++RFP+ F+S     V RHI+LAVR    WGALGLSR + LM+KELR+ S + L  DF   +    H + +L VGFP PHDI S+  V+W+V+   V T  EW      LD     A  L
Sbjct:   42 IKTRLMAVQNYLNSLEYNYTGTLYFDVNKNRSFKSIVNTAKEIAAEMLPIQCLEAVFLAAYITANFPDLERFPLSFKSQAGNSVHRHIVLAVRHQNKWGALGLSRSERLMYKELRFNSLSELTQDFCHGFESVCHVVTKLHVGFPFPHDIHSSEKVEWRVLNVPVDT-VEWSHVATHLDAXAKEAGDL 228          
BLAST of mRNA_H-paniculata_contig2872.7828.1 vs. uniprot
Match: A0A5D6XNG0_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XNG0_9STRA)

HSP 1 Score: 171 bits (432), Expect = 1.550e-47
Identity = 87/182 (47.80%), Postives = 120/182 (65.93%), Query Frame = 1
Query:    1 IRTRLKLIQAYITSLEYNYTGEEFFVKKKDRGFRHVSSTAKLIIREALPIQCVDAVFLGAYLTSKMAEVDRFPVCFRSSLDGRVFRHIILAVR-SHGVWGALGLSRRDTLMHKELRYTSFAGLMADFRASYTGSWHRLEQLWVGFPLPHDISSNVPVKWKVMRASVGTDSEWESAVPDLDRF 543
            ++TRL  IQ  I++LEYNYTG  +F   K+R F+ + STAK I+ E LPIQC++AVFLGAYLT+   E++RFP+ F++   G V RHI+LAVR  H  WGALGLSR + LM KEL+Y S + L+ DF   +   +H + +++ GFP  HDI S+  V+W+VM   +   + W  A   LD F
Sbjct:   39 MKTRLAAIQHVISTLEYNYTGTLYFDVTKNRSFKSIVSTAKDILNEVLPIQCLEAVFLGAYLTASAPELERFPISFKTVAGGCVHRHIVLAVRHQHAKWGALGLSRSEKLMAKELKYASLSELVQDFCREFALLFHAVLKVYAGFPFSHDIHSSEKVEWRVMNLPL-EHATWADAAQHLDAF 219          
BLAST of mRNA_H-paniculata_contig2872.7828.1 vs. uniprot
Match: A0A1Y1IHH0_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IHH0_KLENI)

HSP 1 Score: 168 bits (426), Expect = 1.710e-47
Identity = 83/191 (43.46%), Postives = 124/191 (64.92%), Query Frame = 1
Query:    1 IRTRLKLIQAYITSLEYNYTGEEFFVKKKDRGFRHVSSTAKLIIREALPIQCVDAVFLGAYLTSKMAEVDRFPVCFRSSLDGRVFRHIILAVRSHGVWGALGLSRRDTLMHKELRYTSFAGLMADFRASYTGSWHRLEQLWVGFPLPHDISSNVPVKWKVMRASVGTDSEWESAVPDLDRFVSCASCLYER 573
            +R RL+ IQ +I+S EYNYT E +F  +K R  + +  T + IIR+ALPI+CV+AVFL   LTS + ++DR P+ F++++DG+ FRHI+L VR+ G +GALG+SRR  LM K+L + S A ++ DF+ SY   WH + ++ VG P+ HD  S   + W+ +   V +   WE     LD   SCAS L+++
Sbjct:   35 LRQRLRAIQQFISSFEYNYTPETYFNVRKKRPLKRIVDTGRQIIRDALPIKCVEAVFLALLLTSGL-DIDRIPLGFKTAVDGQEFRHIVLVVRNGGRYGALGISRRKELMFKDLVFNSLAAIVTDFKQSYERWWHTVLKIRVGLPVEHDAHSQNQICWRYLLLKVSS-RPWEECCTALDLHASCASKLWDK 223          
BLAST of mRNA_H-paniculata_contig2872.7828.1 vs. uniprot
Match: A0A1V9ZEI7_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZEI7_9STRA)

HSP 1 Score: 169 bits (429), Expect = 2.260e-47
Identity = 84/198 (42.42%), Postives = 125/198 (63.13%), Query Frame = 1
Query:    1 IRTRLKLIQAYITSLEYNYTGEEFFVKKKDRGFRHVSSTAKLIIREALPIQCVDAVFLGAYLTSK----------MAEVDRFPVCFRSSLDGRVFRHIILAVRSHGVWGALGLSRRDTLMHKELRYTSFAGLMADFRASYTGSWHRLEQLWVGFPLPHDISSNVPVKWKVMRASVGTDSEWESAVPDLDRFVSCASCL 564
            I+ +L  IQAY+++LEYNYTG  +F   K+R ++ +  TAK II EALPIQC++AVF+ AYLT+             ++DR P+ F+S      FRHI+L VR   VWGALGLSR   LM+K+L+Y SF+ L+AD+  ++    H++ +++VGFP  HDI S+  V+W+V+   +  +  WE+    +D F   +S L
Sbjct:   40 IKAKLHAIQAYLSALEYNYTGRLYFNVNKNRSYKSIYGTAKEIISEALPIQCLEAVFVAAYLTAHGMPEYEGLNPSQQIDRVPISFKSRSGDSTFRHIVLGVRHQHVWGALGLSRSPALMNKDLKYKSFSDLVADYIENFVKCQHQVTKVYVGFPFSHDIHSSEKVQWRVLNIKI-VEHPWEAVAAQIDLFTRESSEL 236          
BLAST of mRNA_H-paniculata_contig2872.7828.1 vs. uniprot
Match: A0A1W0A7K4_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A7K4_9STRA)

HSP 1 Score: 168 bits (425), Expect = 8.110e-47
Identity = 80/192 (41.67%), Postives = 121/192 (63.02%), Query Frame = 1
Query:    1 IRTRLKLIQAYITSLEYNYTGEEFFVKKKDRGFRHVSSTAKLIIREALPIQCVDAVFLGAYLTSK----------MAEVDRFPVCFRSSLDGRVFRHIILAVRSHGVWGALGLSRRDTLMHKELRYTSFAGLMADFRASYTGSWHRLEQLWVGFPLPHDISSNVPVKWKVMRASVGTDSEWESAVPDLDRFV 546
            +R++L  IQ Y+ +LEYNYTG+ +F   K R ++ +  TAK II E+LPIQC++AVF+ AYLT+             +VDR P+ F+S   G VFRHI+L ++   +WGALGLSR   LM+KEL+Y +F+ L+AD+   +    H + +++VGFP  HDI S+  V+W+V+   + +D  W++     D F 
Sbjct:   38 VRSKLHAIQTYLNALEYNYTGKLYFNVNKHRSYKSIYGTAKEIIHESLPIQCLEAVFVAAYLTANGNTEYEGMNPNQQVDRVPISFKSRSGGTVFRHIVLGIKHQHMWGALGLSRNADLMNKELKYKNFSELLADYIEHFAKCCHEVTKIYVGFPFSHDIHSSEKVQWRVLNIKI-SDHPWDAVAAQFDLFT 228          
BLAST of mRNA_H-paniculata_contig2872.7828.1 vs. uniprot
Match: A0A5B8MUS1_9CHLO (Uncharacterized protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MUS1_9CHLO)

HSP 1 Score: 162 bits (411), Expect = 5.480e-46
Identity = 78/193 (40.41%), Postives = 123/193 (63.73%), Query Frame = 1
Query:    1 IRTRLKLIQAYITSLEYNYTGEEFFVKKKDRGFRHVSSTAKLIIREALPIQCVDAVFLGAYLTSKMAEVDRFPVCFRSSLDGRVFRHIILAVRS--HGVWGALGLSRRDTLMHKELRYTSFAGLMADFRASYTGSWHRLEQLWVGFPLPHDISSNVPVKWKVMRASVGTDSEWESAVPDLDRFVSCASCLYER 573
            I +R+K+IQ +I  LEYN+T + +F   K R +  V  TAK I+R+ LPI+C++AVFLG YLT+KM +++R PV F+S   G+V+RHIILAV     G +GA+GLSR+  LM+K+L+Y S   L+ +F+++Y   + ++ ++WVG P+P D  S  P+ W+         S W+     L+  +S +  L+ +
Sbjct:   98 IGSRIKMIQQFINKLEYNHTNQNYFNLSKARPYSRVMDTAKKILRDCLPIKCLEAVFLGMYLTNKMDDIERIPVSFKSKFGGKVYRHIILAVHHIPSGKYGAIGLSRKSNLMYKDLKYESMTDLLEEFKSAYEDLYQQVLKIWVGLPVPSDEFSYSPICWRYF---CFRGSSWQRMTKSLESDISNSKRLFSK 287          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2872.7828.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKH4_ECTSI1.690e-9180.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJ50_9PHAE6.320e-7767.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YRP7_9STRA3.450e-5953.75Vasohibin-domain-containing protein n=1 Tax=Tribon... [more]
K3X8V2_GLOUD1.560e-5148.92Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A2D4BXV4_PYTIN1.770e-4946.81Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A5D6XNG0_9STRA1.550e-4747.80Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A1Y1IHH0_KLENI1.710e-4743.46Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A1V9ZEI7_9STRA2.260e-4742.42Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A1W0A7K4_9STRA8.110e-4741.67Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A5B8MUS1_9CHLO5.480e-4640.41Uncharacterized protein n=1 Tax=Chloropicon primus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2872contigH-paniculata_contig2872:9754..12250 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score276.6
Seed ortholog evalue9e-72
Seed eggNOG ortholog2880.D8LKH4
Preferred nameVASH1
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000768,GO:0001525,GO:0001568,GO:0001701,GO:0001890,GO:0001892,GO:0001936,GO:0001937,GO:0001938,GO:0001944,GO:0003006,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006949,GO:0006950,GO:0007275,GO:0008150,GO:0008284,GO:0008285,GO:0009611,GO:0009653,GO:0009790,GO:0009792,GO:0009893,GO:0009987,GO:0010468,GO:0010594,GO:0010596,GO:0010604,GO:0010628,GO:0010632,GO:0010633,GO:0012505,GO:0016043,GO:0016525,GO:0019222,GO:0022414,GO:0022603,GO:0030334,GO:0030336,GO:0032501,GO:0032502,GO:0032879,GO:0035239,GO:0035295,GO:0040012,GO:0040013,GO:0042127,GO:0043009,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043535,GO:0043537,GO:0044421,GO:0044424,GO:0044444,GO:0044464,GO:0045026,GO:0045177,GO:0045765,GO:0045766,GO:0048513,GO:0048514,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048568,GO:0048583,GO:0048608,GO:0048646,GO:0048731,GO:0048856,GO:0050678,GO:0050679,GO:0050680,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051094,GO:0051239,GO:0051240,GO:0051241,GO:0051270,GO:0051271,GO:0060255,GO:0060674,GO:0060711,GO:0060716,GO:0061024,GO:0061025,GO:0061458,GO:0065007,GO:0071840,GO:0072358,GO:0072359,GO:0080134,GO:0080135,GO:0090342,GO:1901342,GO:1901343,GO:1901490,GO:1901491,GO:1904018,GO:2000026,GO:2000145,GO:2000146,GO:2000181,GO:2000772
EggNOG free text desc.negative regulation of lymphangiogenesis
EggNOG OGs2BW4P@1,2QPPX@2759
Ec32 ortholog descriptionVasohibin
Ec32 orthologEc-16_002970.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size576
Cds size576
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2872.7828.1prot_H-paniculata_contig2872.7828.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2872 9754..12250 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929873.5957916-CDS-H-paniculata_contig2872:9753..98001622929873.5957916-CDS-H-paniculata_contig2872:9753..9800Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2872 9754..9800 +
1691481049.327647-CDS-H-paniculata_contig2872:9753..98001691481049.327647-CDS-H-paniculata_contig2872:9753..9800Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2872 9754..9800 +
1622929873.6140869-CDS-H-paniculata_contig2872:10120..102771622929873.6140869-CDS-H-paniculata_contig2872:10120..10277Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2872 10121..10277 +
1691481049.3448882-CDS-H-paniculata_contig2872:10120..102771691481049.3448882-CDS-H-paniculata_contig2872:10120..10277Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2872 10121..10277 +
1622929873.6290765-CDS-H-paniculata_contig2872:10680..108201622929873.6290765-CDS-H-paniculata_contig2872:10680..10820Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2872 10681..10820 +
1691481049.3553019-CDS-H-paniculata_contig2872:10680..108201691481049.3553019-CDS-H-paniculata_contig2872:10680..10820Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2872 10681..10820 +
1622929873.6420844-CDS-H-paniculata_contig2872:11433..115661622929873.6420844-CDS-H-paniculata_contig2872:11433..11566Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2872 11434..11566 +
1691481049.367568-CDS-H-paniculata_contig2872:11433..115661691481049.367568-CDS-H-paniculata_contig2872:11433..11566Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2872 11434..11566 +
1622929873.6539757-CDS-H-paniculata_contig2872:12151..122501622929873.6539757-CDS-H-paniculata_contig2872:12151..12250Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2872 12152..12250 +
1691481049.3809104-CDS-H-paniculata_contig2872:12151..122501691481049.3809104-CDS-H-paniculata_contig2872:12151..12250Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2872 12152..12250 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2872.7828.1

>prot_H-paniculata_contig2872.7828.1 ID=prot_H-paniculata_contig2872.7828.1|Name=mRNA_H-paniculata_contig2872.7828.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=192bp
IRTRLKLIQAYITSLEYNYTGEEFFVKKKDRGFRHVSSTAKLIIREALPI
QCVDAVFLGAYLTSKMAEVDRFPVCFRSSLDGRVFRHIILAVRSHGVWGA
LGLSRRDTLMHKELRYTSFAGLMADFRASYTGSWHRLEQLWVGFPLPHDI
SSNVPVKWKVMRASVGTDSEWESAVPDLDRFVSCASCLYER*
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mRNA from alignment at H-paniculata_contig2872:9754..12250+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2872.7828.1 ID=mRNA_H-paniculata_contig2872.7828.1|Name=mRNA_H-paniculata_contig2872.7828.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2497bp|location=Sequence derived from alignment at H-paniculata_contig2872:9754..12250+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCAGAACACGGTTGAAGCTCATTCAAGCCTACATTACCTCACTTGAGTA AGTCACCTTCATCACCATTCCTGGCGCTAATTTCGTCTCGTAAACCACGT TAAGTTCAGAAACCAACTACCACACGAATCAATTGAGTAAAAAACCTAAA ATAGGCTTCATGGAAGTGATCCAGCCTGTGTATAGCAACATCAATTCTGT CTCAAGCATGGTCAATATACTTTGAGCAATGTGAGTACATGAAGTGTATC ATCTATCGCGATATACTACTACTGGTAGGACATGCAATACACTACCCATA TTTCATATAGGCTCGGAAGGCAGGACAAGCAATTTCCTTCTGTCGTCGAT CCAACATCTCACCACAGGTATAACTACACAGGGGAAGAATTTTTCGTCAA GAAAAAAGACCGAGGGTTCAGGCATGTTTCCTCTACAGCCAAGCTCATCA TTCGGGAGGCGTTACCTATTCAATGTGTAGATGCGGTCTTCCTTGGAGCG TATCTTACGTCGAAGATGGCAGAGGTACATATACCGTAGGGTGCCTGGCA AAACAAACTCTGTCCTTTTCAAATCGAGCTCAAGGACCACGTAGAAGGGA AAACGTCCATATGTTTCATGCATTGGGCTGTGGGGCAGAAGTACATGGGA GCTTTCGATGCGGACATAATGCTTCATGACGAAATGTATCTCACCTAGCT AAGTTAGAGTCCATTGAATAGTCGGTATTTCACCGAATGACAGGTAACCA CTTACTGTAGCGTACATCTGAGCAACTATAGTTGCGAGAAAGTGTGGAAA CAATATTTATCATGTAATGCTACTCCGCCACTTCTTCAGGCGAAGAACAT AGTTAATGGCGATGAAGGCGAGGCAAACTCATCATTTTTCATCCATGTAT TTGTCGCATTGACTTCGACACGTGAAGGTGGATCGGTTTCCTGTGTGCTT CCGCTCATCCTTGGACGGTCGTGTGTTCCGCCACATCATTCTTGCTGTGC GAAGTCACGGCGTGTGGGGGGCTCTCGGTTTAAGCCGGCGGGACACACTC ATGCACAAAGAGCTTCGGTAAGCAGCTTTATAATGTCATTGGGTTAAAGT TCCACAACGCTTAGCGTTTGCTGCGCGTCCATTGTTTTCACAACATATCA ACAGCGAGTTCAGTATTTTATAATATACTATTACTACCCGTCGGATATGT AACACTTGAAGTTTAACTAGCAATTCTGAGTCATCAGACGTGAAGTGGAT GGCGTTCATCTTACTTATTCTAGATATAGAACATAGCACACTCCTCGCTA GATGAAGCTACAAGTGATGGGACTGTAATTTTTACAGTTCAACTATGGAG TACTTGCATCCGCAGCCCCCTGTGTGCCCAATTCCTGTTCTTTGATTTCA CCACGTCAGCCTCTGCAAGTCGAGCTTTCGGAAATCGTTTCACCAGAGGG GAAAATGCTGATGAAACTCTCCGCTTCCTTCGAGAACTCGCGCGCGTGGA GCGAGTGGGGGGGGGGGGAAGCAAGGCAAACCATGCCCACCAAGGGGATG ACATACATCGTATCAGCTACTCCGAAAGGCTAATCTGCGACCACCCCTCG TTCTTATTTATTTCCCATGTAAATGTGATCTACTCCCCACCTCCTGTTGA CCCAGTACCTCCATCCATCTACACAAAAAGGTACACTTCCTTCGCGGGGC TCATGGCGGACTTTAGGGCTTCCTATACCGGAAGCTGGCACCGACTGGAG CAACTGTGGGTCGGGTTTCCTCTACCTCACGACATATCTTCCAACGTTCC CGTCAAGTGGAAGGTGAACGCTATTGGGGAACCTTTCGCCTTGTATCAGC GTGCATGCGCAAAGTGGCGTAATAGAGTAGATGTTTTGTGATGCGCTCTC ATGAAACGAGGGAATGTTGGTCACAGTGTTCACTTTCATTCTTCACCATG ATGATACTATTATTTGATATCAGCACCATGCTACCCCCCCTCCTTGACCC GGGCAACCCCACCGTTCGTTTATGCCTCTCTGTGCGTTTCAACACCCTCC AAATTTCATCTCTTGTGTAGCATCGAACAATAAAATTAGGAAGACGCATT GCAGCTCGTACGAACTGTTGTGACTGGAAAAGGGGGGAACGGCGTAAGGG ACAGTTGTGGTAACCCCTTACCCCGAAAGGGAAATACCGCCTTCGTGCGT CCGCAGCGATACGGGTGCATGCTGCGTGGACAGCTAGACCTGCCTACGCC GTGTCCCCTCTTCTCTCAACGCGAAAAAAAGATCTGGACGTTTTTATCCT CACACAATGACTACCATTCGCTTTTGTTGGGAACTTCCGTGTCGCTCTTC CTTTCGATCGCTTCTCTCTGATGAGTGGTCTACCCTATGATGTTGCAGGT CATGCGAGCCTCCGTAGGCACAGACTCTGAGTGGGAATCAGCCGTCCCCG ATCTCGACCGTTTTGTTTCGTGTGCCTCGTGCCTGTATGAGAGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig2872:9754..12250+

>mRNA_H-paniculata_contig2872.7828.1 ID=mRNA_H-paniculata_contig2872.7828.1|Name=mRNA_H-paniculata_contig2872.7828.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1152bp|location=Sequence derived from alignment at H-paniculata_contig2872:9754..12250+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCAGAACACGGTTGAAGCTCATTCAAGCCTACATTACCTCACTTGAATC
AGAACACGGTTGAAGCTCATTCAAGCCTACATTACCTCACTTGAGTATAA
CTACACAGGGGAAGAATTTTTCGTCAAGAAAAAAGACCGAGGGTTCAGGC
ATGTTTCCTCTACAGCCAAGCTCATCATTCGGGAGGCGTTACCTATTCAA
TGTGTAGATGCGGTCTTCCTTGGAGCGTATCTTACGTCGAAGATGGCAGA
GGTATAACTACACAGGGGAAGAATTTTTCGTCAAGAAAAAAGACCGAGGG
TTCAGGCATGTTTCCTCTACAGCCAAGCTCATCATTCGGGAGGCGTTACC
TATTCAATGTGTAGATGCGGTCTTCCTTGGAGCGTATCTTACGTCGAAGA
TGGCAGAGGTGGATCGGTTTCCTGTGTGCTTCCGCTCATCCTTGGACGGT
CGTGTGTTCCGCCACATCATTCTTGCTGTGCGAAGTCACGGCGTGTGGGG
GGCTCTCGGTTTAAGCCGGCGGGACACACTCATGCACAAAGAGCTTCGGT
GGATCGGTTTCCTGTGTGCTTCCGCTCATCCTTGGACGGTCGTGTGTTCC
GCCACATCATTCTTGCTGTGCGAAGTCACGGCGTGTGGGGGGCTCTCGGT
TTAAGCCGGCGGGACACACTCATGCACAAAGAGCTTCGGTACACTTCCTT
CGCGGGGCTCATGGCGGACTTTAGGGCTTCCTATACCGGAAGCTGGCACC
GACTGGAGCAACTGTGGGTCGGGTTTCCTCTACCTCACGACATATCTTCC
AACGTTCCCGTCAAGTGGAAGGTACACTTCCTTCGCGGGGCTCATGGCGG
ACTTTAGGGCTTCCTATACCGGAAGCTGGCACCGACTGGAGCAACTGTGG
GTCGGGTTTCCTCTACCTCACGACATATCTTCCAACGTTCCCGTCAAGTG
GAAGGTCATGCGAGCCTCCGTAGGCACAGACTCTGAGTGGGAATCAGCCG
TCCCCGATCTCGACCGTTTTGTTTCGTGTGCCTCGTGCCTGTATGAGAGG
TGAGTCATGCGAGCCTCCGTAGGCACAGACTCTGAGTGGGAATCAGCCGT
CCCCGATCTCGACCGTTTTGTTTCGTGTGCCTCGTGCCTGTATGAGAGGT
GA
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