mRNA_H-paniculata_contig287.7822.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig287.7822.1
Unique NamemRNA_H-paniculata_contig287.7822.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig287.7822.1 vs. uniprot
Match: D8LSI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI8_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 7.730e-44
Identity = 69/96 (71.88%), Postives = 85/96 (88.54%), Query Frame = 2 
Query:   65 MRIPQPWTQQVACEMTVEPIWPFAYSKYNGQKVEGKGRTNTNSQDNRHKCDRRGVRSKCYICEDITCGVDMESNCGYQLQGVNASLLATNVPSVSD 352
            MRIP+PW+++ +CE  VEP+WPF YSKY GQ+VE KGRTNTN QD RH+CDRRGVRSKC++CEDI CG +++++C YQLQGVNASLLATN+PSVSD
Sbjct:    1 MRIPRPWSERSSCEKAVEPVWPFVYSKYRGQEVEAKGRTNTNLQDERHECDRRGVRSKCHVCEDIVCGENLDADCSYQLQGVNASLLATNIPSVSD 96
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BLAST of mRNA_H-paniculata_contig287.7822.1 vs. uniprot
Match: B8BPX3_THAPS (EGF-like domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BPX3_THAPS)

HSP 1 Score: 103 bits (257), Expect = 2.410e-23
Identity = 49/97 (50.52%), Postives = 66/97 (68.04%), Query Frame = 2 
Query:   62 SMRIPQPWTQQVACEMTVEPIWPFAYSKYNGQKVEGKGRTNTNSQDNRHKCDRRGVRSKCYICEDITCGVDMESNCGYQLQGVNASLLATNVPSVSD 352
            +++I + WT Q  CE   +P WPFAYSKY GQ  E KGR ++N QD RHKCD RGV+SKC+ICED            +QLQGV++  ++TN+P++SD
Sbjct:   20 TLQIARTWTAQHWCESVKQPEWPFAYSKYKGQVEETKGRVSSNKQDVRHKCDSRGVKSKCHICEDH-----------FQLQGVSSDDMSTNIPTISD 105
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BLAST of mRNA_H-paniculata_contig287.7822.1 vs. uniprot
Match: A0A812JCG0_9DINO (VWDE protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812JCG0_9DINO)

HSP 1 Score: 103 bits (256), Expect = 3.260e-23
Identity = 48/100 (48.00%), Postives = 63/100 (63.00%), Query Frame = 2 
Query:   53 TGSSMRIPQPWTQQVACEMTVEPIWPFAYSKYNGQKVEGKGRTNTNSQDNRHKCDRRGVRSKCYICEDITCGVDMESNCGYQLQGVNASLLATNVPSVSD 352
            T  + R  +PW  +  C   VEP WPFAY+K  GQ VE KGRT +N Q   H+C   G RSKC+ CED +CG D+ S+C +Q+QGV  + L  +VP+V D
Sbjct:   48 TAYAWRQHRPWNTRPWCSEVVEPSWPFAYAKVGGQTVERKGRTASNLQHMGHECTTAGARSKCFRCEDFSCGPDLNSSCAFQVQGVPHTALPPSVPTVHD 147
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig287.7822.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LSI8_ECTSI7.730e-4471.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
B8BPX3_THAPS2.410e-2350.52EGF-like domain-containing protein n=1 Tax=Thalass... [more]
A0A812JCG0_9DINO3.260e-2348.00VWDE protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig287contigH-paniculata_contig287:9516..10931 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score163.7
Seed ortholog evalue5.2e-38
Seed eggNOG ortholog2880.D8LSI8
Preferred nameFBN3
KEGG koko:K02599,ko:K17495
KEGG Pathwayko01522,ko04320,ko04330,ko04658,ko04919,ko05020,ko05165,ko05200,ko05206,ko05224,map01522,map04320,map04330,map04658,map04919,map05020,map05165,map05200,map05206,map05224
KEGG ModuleM00682
Hectar predicted targeting categoryother localisation
EggNOG free text desc.calcium ion binding
EggNOG OGsKOG1217@1,KOG1217@2759,KOG2177@1,KOG2177@2759,KOG4297@1,KOG4297@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01009
Exons3
Model size353
Cds size351
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig287.7822.1prot_H-paniculata_contig287.7822.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig287 9516..10930 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929872.978286-CDS-H-paniculata_contig287:9515..95601622929872.978286-CDS-H-paniculata_contig287:9515..9560Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig287 9516..9560 -
1691481048.931974-CDS-H-paniculata_contig287:9515..95601691481048.931974-CDS-H-paniculata_contig287:9515..9560Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig287 9516..9560 -
1622929872.9897182-CDS-H-paniculata_contig287:10020..101671622929872.9897182-CDS-H-paniculata_contig287:10020..10167Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig287 10021..10167 -
1691481048.9418204-CDS-H-paniculata_contig287:10020..101671691481048.9418204-CDS-H-paniculata_contig287:10020..10167Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig287 10021..10167 -
1622929873.0004764-CDS-H-paniculata_contig287:10771..109301622929873.0004764-CDS-H-paniculata_contig287:10771..10930Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig287 10772..10930 -
1691481048.9492502-CDS-H-paniculata_contig287:10771..109301691481048.9492502-CDS-H-paniculata_contig287:10771..10930Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig287 10772..10930 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929873.0114384-UTR-H-paniculata_contig287:10930..109311622929873.0114384-UTR-H-paniculata_contig287:10930..10931Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig287 10931..10931 -
1691481048.957254-UTR-H-paniculata_contig287:10930..109311691481048.957254-UTR-H-paniculata_contig287:10930..10931Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig287 10931..10931 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig287.7822.1

>prot_H-paniculata_contig287.7822.1 ID=prot_H-paniculata_contig287.7822.1|Name=mRNA_H-paniculata_contig287.7822.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
MGVVMAVFEYAVFVRIPTGSSMRIPQPWTQQVACEMTVEPIWPFAYSKYN
GQKVEGKGRTNTNSQDNRHKCDRRGVRSKCYICEDITCGVDMESNCGYQL
QGVNASLLATNVPSVSD
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mRNA from alignment at H-paniculata_contig287:9516..10931-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig287.7822.1 ID=mRNA_H-paniculata_contig287.7822.1|Name=mRNA_H-paniculata_contig287.7822.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1416bp|location=Sequence derived from alignment at H-paniculata_contig287:9516..10931- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATGGGCGTTGTTATGGCAGTCTTCGAGTATGCAGTCTTTGTTCGCATAC
CGACAGGCTCTTCCATGCGAATACCTCAGCCTTGGACACAGCAGGTGGCT
TGTGAGATGACCGTAGAACCAATCTGGCCATTCGCGTACAGCAAGTACAA
TGGACAAAAGGTAACGAATCAAGGTATTGATATTGTGTTTGTGTTATGTG
ACTTATTTTCAAGGATTGGGGATGAGGAGGTTGCCACAAAATCCACTGTT
GAAACAGGAAAACACTGGGTACCGTGTGACTTCTTTGCTCCCTCCTCCGT
AATTCCTCTGATGATTATTGTCCTGTTGAGATTTCCCTTCGTGGATGCTG
CCTGTCACCTATTCCACTTGTCGCTGATGAATGTCCCTATTGTGCACATA
GACGGCAAGATTGTCTGTGCCATCTATGATTTCCACAAACAGCAGTATCA
CCCGCCCTATTTACCCTCCATGCAGTCTTGGGCCGAAACGCTGCGCTCAA
TAAACAATTTACCCTTCTTAGCGCCGGCTCCCATCTAGCCATCCCTACCT
GAAATACAGGGGGAAGCGACGCCTATGATATTAGCAACGGACAAATCGCC
ATTTAGACATACAGTTCACTACAGACAGTAAAGAAAGGACAGGCGGGTAA
TTGACACGGTTCTGTGCACAACGATTGGAGCGCTCGACATTTGTTGTTAA
TCGTTGTTATTTGTTCCGAAACAGCTTCTGACTTTAAAAGGGTTAACGGT
CATTCATGTAGCAGGTGGAAGGGAAGGGGAGAACCAACACCAACTCGCAA
GATAACCGGCACAAGTGCGACCGGCGAGGCGTACGCAGTAAGTGCTATAT
TTGCGAGGATATCACCTGCGGCGTCGACATGGAATCCAACTGCGGATATC
AGTTGCAAGGGGTGAGTCGGAGATGCAAATTGCACATGTACGGCCATGGA
CCGAAATGTACTATTTTGATACTGTGCTCGGTACTGCAAATCGCCGTGTA
GCGCATCAAATACCCCCCCCACTGACAAGAATTCAGCTAATAGGAGTATG
AGCCTCTTGTTTTCAACCTGAGAAATTTCCCACAAGAAAATGTGCTTAAA
TTGTGGTCCTGCTAGTTCCTACTCTTGACTATATAGTCAAATACTGGTCG
CGATAATCGCCACAATAAGGTTTTGACTCTTCAACTAAATAAAACTCTCC
TGTTAGGGGACCCGCACTGTACACTTATCTAGTCCAAAATGTCGAATAAT
CAAGAATGATGCAATATATGCAATACGCAAGCTTCCAAGGGCTGTTGACC
CGAGGTCTAAAACAGCGGTATTGTTCCACTCACATTGAGGTGTCCTGTCT
ACACCCGGGAACCGCGTTCAGGTTAATGCATCCCTGTTGGCCACAAATGT
TCCAAGCGTTAGCGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig287:9516..10931-

>mRNA_H-paniculata_contig287.7822.1 ID=mRNA_H-paniculata_contig287.7822.1|Name=mRNA_H-paniculata_contig287.7822.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig287:9516..10931- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCGTTGTTATGGCAGTCTTCGAGTATGCAGTCTTTGTTCGCATACC
GACAGGCTCTTCCATGCGAATACCTCAGCCTTGGACACAGCAGGTGGCTT
GTGAGATGACCGTAGAACCAATCTGGCCATTCGCGTACAGCAAGTACAAT
GGACAAAAGATGGGCGTTGTTATGGCAGTCTTCGAGTATGCAGTCTTTGT
TCGCATACCGACAGGCTCTTCCATGCGAATACCTCAGCCTTGGACACAGC
AGGTGGCTTGTGAGATGACCGTAGAACCAATCTGGCCATTCGCGTACAGC
AAGTACAATGGACAAAAGGTGGAAGGGAAGGGGAGAACCAACACCAACTC
GCAAGATAACCGGCACAAGTGCGACCGGCGAGGCGTACGCAGTAAGTGCT
ATATTTGCGAGGATATCACCTGCGGCGTCGACATGGAATCCAACTGCGGA
TATCAGTTGCAAGGGGTGGAAGGGAAGGGGAGAACCAACACCAACTCGCA
AGATAACCGGCACAAGTGCGACCGGCGAGGCGTACGCAGTAAGTGCTATA
TTTGCGAGGATATCACCTGCGGCGTCGACATGGAATCCAACTGCGGATAT
CAGTTGCAAGGGGTTAATGCATCCCTGTTGGCCACAAATGTTCCAAGCGT
TAGCGATGTTAATGCATCCCTGTTGGCCACAAATGTTCCAAGCGTTAGCG
AT
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