mRNA_H-paniculata_contig2865.7811.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2865.7811.1
Unique NamemRNA_H-paniculata_contig2865.7811.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2865.7811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2865contigH-paniculata_contig2865:10869..12438 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size752
Cds size513
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2865.7811.1prot_H-paniculata_contig2865.7811.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2865 10869..12200 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929871.642854-CDS-H-paniculata_contig2865:10868..111561622929871.642854-CDS-H-paniculata_contig2865:10868..11156Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2865 10869..11156 -
1691481048.2996507-CDS-H-paniculata_contig2865:10868..111561691481048.2996507-CDS-H-paniculata_contig2865:10868..11156Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2865 10869..11156 -
1622929871.6643248-CDS-H-paniculata_contig2865:11649..117241622929871.6643248-CDS-H-paniculata_contig2865:11649..11724Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2865 11650..11724 -
1691481048.3127823-CDS-H-paniculata_contig2865:11649..117241691481048.3127823-CDS-H-paniculata_contig2865:11649..11724Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2865 11650..11724 -
1622929871.6785574-CDS-H-paniculata_contig2865:12050..122001622929871.6785574-CDS-H-paniculata_contig2865:12050..12200Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2865 12051..12200 -
1691481048.3258429-CDS-H-paniculata_contig2865:12050..122001691481048.3258429-CDS-H-paniculata_contig2865:12050..12200Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2865 12051..12200 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929871.6936076-UTR-H-paniculata_contig2865:12200..124381622929871.6936076-UTR-H-paniculata_contig2865:12200..12438Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2865 12201..12438 -
1691481048.3471997-UTR-H-paniculata_contig2865:12200..124381691481048.3471997-UTR-H-paniculata_contig2865:12200..12438Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2865 12201..12438 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2865.7811.1

>prot_H-paniculata_contig2865.7811.1 ID=prot_H-paniculata_contig2865.7811.1|Name=mRNA_H-paniculata_contig2865.7811.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=171bp
MNGGGAYSKGARRKTSSLVLARTNSSAGSGGSGSIAGSNASAGNNNTRWN
SQDHGDRGGGQRASNTPPVRGGQLQLQSVPRAQAGGTPSTSNPNPAQNQQ
RSVQWGSTGGRSKPPQQRTHAGNEGQTQGTGNQSNYQQNRQSNGSGLRAR
GGGQSGHSRVAGSSTGLVPLH
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mRNA from alignment at H-paniculata_contig2865:10869..12438-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2865.7811.1 ID=mRNA_H-paniculata_contig2865.7811.1|Name=mRNA_H-paniculata_contig2865.7811.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1570bp|location=Sequence derived from alignment at H-paniculata_contig2865:10869..12438- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTCTCGTTGTCTTTTGATTGGCGTGCGCGGAAGACCCAACTGGGTCGA
TCAGTAGGCTAGGCTAAATTCTGTCGCATTTGGTTTATCTAATCCTGGTC
CTTCAATGCTAGCAGAGCGAGCGCATATGCAGCGCGAACAAAACGGTCGA
GATATCAATAAACCAAAATCCGTTTTCTGTCGTGCCGTTGAGTCAAACAG
CACACCAAGGTCGTAGCCTTGTCGCCATCGGCTAAGCCATGAACGGAGGT
GGGGCTTACAGCAAGGGCGCTAGGCGTAAGACGTCTTCTTTGGTTCTTGC
CAGGACAAACTCGTCTGCTGGCAGTGGTGGCAGCGGTAGCATTGCAGGAT
CAAATGCATCGGCTGGTAACAACAACACGAGGTGGAACGTGAGTTGAAGA
GCAACGACGGTTACAATTGCACTGGTAATGCTCTGTACTCACTGTCACCT
GGACACTGGTCTCTGTCGTCGACATGTTAACGCCAATTGAACCAGTTCTC
ACTTCATGTCACATGGGGGGGATTCGGCAACTAGCAAAAAAAACTCAAGC
AAGTGAGCATCTGTGAGTATGTGAAGTACACCTGGTTGACTACGTACAAT
GCAAGGCAGTGGTGCACTTTTGATTTGTCATGGTCGTTGTCTTTCCGTCT
CAACTTGAGATCTCTGCGGATTGGGGGTGTTGTTCATGTTGCTACTGTTG
GTATCTCTCTCAAGTCGCAGGATCACGGTGACAGAGGAGGAGGGCAGCGA
GCCAGCAACACCCCTCCAGTAAGAGGCGGCCAGCTCCAGGTAACTAAAGT
TCAACGCGCAGAAGTATTGCTGCTCTGTAGCGGGTAATTCCCGATGGGAC
CGTGCTAGGATGGTTGACGCAAGTGCTGTTATCTAAATTTCAAAATAGCC
ACCACCATCGGTTACGGTTGCAGTGTGTGCGGTGGTCCCTCATGTTCTGA
CATGCTGGTACCTGGTACAGGCATTTTGCGATGTGCGCTTGAAACCGAGC
TGCATTAGCACTATCCTGAGAAATCTCAATCTATACGCTTCGATTCGATT
CGATTCTACAAGCAGAGAACGTACCTGCAGTTACAGCTACACAGGGGATT
TTTCCCAACTACAGTATTCAATCACTTACGGTACCTTTCTCGTGCCTCAC
ACACCACTTTCTCTTAAGCCTTCGCTCGTACTAGTGCTGTCAAACAAACA
CCCACCATCGCGTGCACCCCCTCCACGCCCTTTCCCCGGTCATCATCGGC
TCACCCATTTTGTGGAAATTAACGACGTGTAGCTCCAGAGTGTCCCGCGA
GCGCAGGCTGGCGGAACGCCAAGCACAAGCAACCCTAATCCGGCGCAGAA
CCAGCAGCGAAGCGTACAATGGGGCTCTACCGGTGGCCGATCGAAGCCGC
CGCAACAGCGAACCCACGCCGGAAATGAAGGTCAAACGCAGGGAACGGGA
AACCAGAGCAACTACCAACAAAACCGCCAGAGCAATGGCTCAGGCTTACG
AGCTCGAGGAGGCGGACAAAGTGGACATAGTAGGGTGGCTGGTTCTTCTA
CCGGACTGGTTCCGTTGCAT
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Coding sequence (CDS) from alignment at H-paniculata_contig2865:10869..12438-

>mRNA_H-paniculata_contig2865.7811.1 ID=mRNA_H-paniculata_contig2865.7811.1|Name=mRNA_H-paniculata_contig2865.7811.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1026bp|location=Sequence derived from alignment at H-paniculata_contig2865:10869..12438- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACGGAGGTGGGGCTTACAGCAAGGGCGCTAGGCGTAAGACGTCTTC
TTTGGTTCTTGCCAGGACAAACTCGTCTGCTGGCAGTGGTGGCAGCGGTA
GCATTGCAGGATCAAATGCATCGGCTGGTAACAACAACACGAGGTGGAAC
ATGAACGGAGGTGGGGCTTACAGCAAGGGCGCTAGGCGTAAGACGTCTTC
TTTGGTTCTTGCCAGGACAAACTCGTCTGCTGGCAGTGGTGGCAGCGGTA
GCATTGCAGGATCAAATGCATCGGCTGGTAACAACAACACGAGGTGGAAC
TCGCAGGATCACGGTGACAGAGGAGGAGGGCAGCGAGCCAGCAACACCCC
TCCAGTAAGAGGCGGCCAGCTCCAGTCGCAGGATCACGGTGACAGAGGAG
GAGGGCAGCGAGCCAGCAACACCCCTCCAGTAAGAGGCGGCCAGCTCCAG
CTCCAGAGTGTCCCGCGAGCGCAGGCTGGCGGAACGCCAAGCACAAGCAA
CCCTAATCCGGCGCAGAACCAGCAGCGAAGCGTACAATGGGGCTCTACCG
GTGGCCGATCGAAGCCGCCGCAACAGCGAACCCACGCCGGAAATGAAGGT
CAAACGCAGGGAACGGGAAACCAGAGCAACTACCAACAAAACCGCCAGAG
CAATGGCTCAGGCTTACGAGCTCGAGGAGGCGGACAAAGTGGACATAGTA
GGGTGGCTGGTTCTTCTACCGGACTGGTTCCGTTGCATCTCCAGAGTGTC
CCGCGAGCGCAGGCTGGCGGAACGCCAAGCACAAGCAACCCTAATCCGGC
GCAGAACCAGCAGCGAAGCGTACAATGGGGCTCTACCGGTGGCCGATCGA
AGCCGCCGCAACAGCGAACCCACGCCGGAAATGAAGGTCAAACGCAGGGA
ACGGGAAACCAGAGCAACTACCAACAAAACCGCCAGAGCAATGGCTCAGG
CTTACGAGCTCGAGGAGGCGGACAAAGTGGACATAGTAGGGTGGCTGGTT
CTTCTACCGGACTGGTTCCGTTGCAT
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