mRNA_H-paniculata_contig28615.7798.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig28615.7798.1 vs. uniprot
Match: D7FLP3_ECTSI (DNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLP3_ECTSI) HSP 1 Score: 121 bits (303), Expect = 2.890e-30 Identity = 65/77 (84.42%), Postives = 67/77 (87.01%), Query Frame = 1
Query: 1 GAGLPIGVMQCSDAAGEASAIASQAEAYWTSGRVSASEMAVMYRTNAQSRSFEEAFLRRALPFVVVGAQRFYERREV 231
G GLPIGVM CSDAAGEA A+A E YWTSGRV SEMAVMYRTNAQSRSFEEA LR+ALPFVVVGAQRFYERREV
Sbjct: 494 GDGLPIGVMVCSDAAGEAEAVAHHLELYWTSGRVQPSEMAVMYRTNAQSRSFEEACLRKALPFVVVGAQRFYERREV 570
BLAST of mRNA_H-paniculata_contig28615.7798.1 vs. uniprot
Match: A0A835Z3L0_9STRA (DNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3L0_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 1.010e-19 Identity = 48/75 (64.00%), Postives = 57/75 (76.00%), Query Frame = 1
Query: 7 GLPIGVMQCSDAAGEASAIASQAEAYWTSGRVSASEMAVMYRTNAQSRSFEEAFLRRALPFVVVGAQRFYERREV 231
GLP+GVM C +AA EA+ IA Q YWT G V SEMAVMYRTNAQSR+ EEAFLR+ +P+ VV Q+F+ RREV
Sbjct: 499 GLPLGVMTCYNAAQEAAEIAKQVSRYWTRGTVPLSEMAVMYRTNAQSRALEEAFLRQGVPYRVVDGQKFFARREV 573
BLAST of mRNA_H-paniculata_contig28615.7798.1 vs. uniprot
Match: A0A497AZB6_9CHLR (DNA helicase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A497AZB6_9CHLR) HSP 1 Score: 71.2 bits (173), Expect = 1.080e-12 Identity = 39/77 (50.65%), Postives = 50/77 (64.94%), Query Frame = 1
Query: 1 GAGLPIGVMQCSDAAGEASAIASQAEAYWTSGRVSASEMAVMYRTNAQSRSFEEAFLRRALPFVVVGAQRFYERREV 231
G GLPI V + D E+ + + + G S + AVMYRTNAQSR+ EEAFLRR +P+ +VGA RFYERRE+
Sbjct: 309 GQGLPIIVFEAYDEVEESEFVVGEIQRLIARGLYSPGDFAVMYRTNAQSRTLEEAFLRRGMPYQLVGATRFYERREI 385
BLAST of mRNA_H-paniculata_contig28615.7798.1 vs. uniprot
Match: A0A7C5RQI7_9CHLR (DNA helicase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C5RQI7_9CHLR) HSP 1 Score: 70.9 bits (172), Expect = 1.480e-12 Identity = 41/77 (53.25%), Postives = 53/77 (68.83%), Query Frame = 1
Query: 1 GAGLPIGVMQCSDAAGEASAIASQAEAYWTSGRVSASEMAVMYRTNAQSRSFEEAFLRRALPFVVVGAQRFYERREV 231
G G PI V + D EA+ +AS+ E+ +G+ + S+ AVMYRTNAQSR EEAF+ R +P+ VVG RFYERREV
Sbjct: 316 GPGHPIVVHETYDEMEEAAFVASEVESLVATGQYTFSDFAVMYRTNAQSRPLEEAFMIRGIPYRVVGGLRFYERREV 392
BLAST of mRNA_H-paniculata_contig28615.7798.1 vs. uniprot
Match: A0A212R655_9CHLR (DNA helicase n=1 Tax=Thermoflexus hugenholtzii JAD2 TaxID=877466 RepID=A0A212R655_9CHLR) HSP 1 Score: 69.3 bits (168), Expect = 5.160e-12 Identity = 38/77 (49.35%), Postives = 52/77 (67.53%), Query Frame = 1
Query: 1 GAGLPIGVMQCSDAAGEASAIASQAEAYWTSGRVSASEMAVMYRTNAQSRSFEEAFLRRALPFVVVGAQRFYERREV 231
G G PI + + D EA+ IA + + +GR+ E+AVMYRTNAQSR+ EEAFL+ +P+ +VG RFY+RREV
Sbjct: 314 GPGAPITLYEAFDEEDEAAFIARRVQELIEAGRIQPGEIAVMYRTNAQSRALEEAFLQAGIPYRLVGGVRFYQRREV 390
BLAST of mRNA_H-paniculata_contig28615.7798.1 vs. uniprot
Match: A0A6B1AIF6_9BACT (DNA helicase n=7 Tax=Gemmatimonadales bacterium TaxID=2448054 RepID=A0A6B1AIF6_9BACT) HSP 1 Score: 69.3 bits (168), Expect = 5.190e-12 Identity = 40/76 (52.63%), Postives = 54/76 (71.05%), Query Frame = 1
Query: 4 AGLPIGVMQCSDAAGEASAIASQAEAYWTSGRVSASEMAVMYRTNAQSRSFEEAFLRRALPFVVVGAQRFYERREV 231
AG PI V++C D EA+ ++S+ EA + R++ E AV+YRTNAQSR+FEEAF R +P+ +VG FYERREV
Sbjct: 418 AGDPIEVVRCDDERAEAAWVSSRIEAVRATRRLN--EFAVLYRTNAQSRAFEEAFRRSGIPYRIVGGVPFYERREV 491
BLAST of mRNA_H-paniculata_contig28615.7798.1 vs. uniprot
Match: A0A535D503_9CHLR (DNA helicase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535D503_9CHLR) HSP 1 Score: 68.6 bits (166), Expect = 9.730e-12 Identity = 38/75 (50.67%), Postives = 52/75 (69.33%), Query Frame = 1
Query: 7 GLPIGVMQCSDAAGEASAIASQAEAYWTSGRVSASEMAVMYRTNAQSRSFEEAFLRRALPFVVVGAQRFYERREV 231
G P+ ++ D EA+A++++ E VS E AV+YRTNAQSR+FEEAFLRR +P+ +VG RFY+RREV
Sbjct: 591 GEPVRLISVYDEREEAAAVSNEVENLIGREGVSLGECAVLYRTNAQSRAFEEAFLRRGIPYQLVGGVRFYDRREV 665
BLAST of mRNA_H-paniculata_contig28615.7798.1 vs. uniprot
Match: A0LRT9_ACIC1 (ATP-dependent DNA helicase n=2 Tax=Acidothermus cellulolyticus TaxID=28049 RepID=A0LRT9_ACIC1) HSP 1 Score: 68.2 bits (165), Expect = 1.320e-11 Identity = 40/77 (51.95%), Postives = 49/77 (63.64%), Query Frame = 1
Query: 1 GAGLPIGVMQCSDAAGEASAIASQAEAYWTSGRVSASEMAVMYRTNAQSRSFEEAFLRRALPFVVVGAQRFYERREV 231
G G+PI D GEA+ +A + + G + ++AV YRTNAQSR FEEAFLR LP+ VVG RFYERREV
Sbjct: 349 GDGVPIVGFVADDEHGEAAFVAEEIDRLVDEGAATFKDIAVFYRTNAQSRVFEEAFLRVGLPYKVVGGVRFYERREV 425
BLAST of mRNA_H-paniculata_contig28615.7798.1 vs. uniprot
Match: A0A7C2YSI9_9CHLR (DNA helicase (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C2YSI9_9CHLR) HSP 1 Score: 67.8 bits (164), Expect = 1.760e-11 Identity = 41/77 (53.25%), Postives = 48/77 (62.34%), Query Frame = 1
Query: 1 GAGLPIGVMQCSDAAGEASAIASQAEAYWTSGRVSASEMAVMYRTNAQSRSFEEAFLRRALPFVVVGAQRFYERREV 231
G GLP V + D EAS +A++ E R AVMYRTNAQSR EEAFLRR +P+ +VG RFYERREV
Sbjct: 314 GPGLPAVVYEAFDEVEEASFVAAEIERLAREERRPYRHFAVMYRTNAQSRPLEEAFLRRGIPYRLVGGVRFYERREV 390
BLAST of mRNA_H-paniculata_contig28615.7798.1 vs. uniprot
Match: A0A523HMJ9_9CHLR (DNA helicase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A523HMJ9_9CHLR) HSP 1 Score: 67.8 bits (164), Expect = 1.800e-11 Identity = 38/77 (49.35%), Postives = 49/77 (63.64%), Query Frame = 1
Query: 1 GAGLPIGVMQCSDAAGEASAIASQAEAYWTSGRVSASEMAVMYRTNAQSRSFEEAFLRRALPFVVVGAQRFYERREV 231
G+G PI V + D EA + + + SG + A+MYRTNAQSR+ EEAFLR LP+ +VGAQRFY R+EV
Sbjct: 311 GSGAPILVHEAYDQDEEAQFVVEKISMFTLSGEAEPGDCAIMYRTNAQSRAIEEAFLRAGLPYRLVGAQRFYGRKEV 387 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28615.7798.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig28615.7798.1 >prot_H-paniculata_contig28615.7798.1 ID=prot_H-paniculata_contig28615.7798.1|Name=mRNA_H-paniculata_contig28615.7798.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp MQCSDAAGEASAIASQAEAYWTSGRVSASEMAVMYRTNAQSRSFEEAFLRback to top mRNA from alignment at H-paniculata_contig28615:158..388- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig28615.7798.1 ID=mRNA_H-paniculata_contig28615.7798.1|Name=mRNA_H-paniculata_contig28615.7798.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=231bp|location=Sequence derived from alignment at H-paniculata_contig28615:158..388- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig28615:158..388- >mRNA_H-paniculata_contig28615.7798.1 ID=mRNA_H-paniculata_contig28615.7798.1|Name=mRNA_H-paniculata_contig28615.7798.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at H-paniculata_contig28615:158..388- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |