mRNA_H-paniculata_contig28601.7792.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28601.7792.1
Unique NamemRNA_H-paniculata_contig28601.7792.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig28601.7792.1 vs. uniprot
Match: D7FK97_ECTSI (Zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK97_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 1.700e-21
Identity = 39/55 (70.91%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:    1 CEPCEKDFASESAHRAHMLSHVPCPEDGCGFSASRKVISAHHSAKHGRFSGSGFQ 165
            CEPCEK+F +E+A +AH+ SHVPCPE GCGFSA RK+++ HH AKHG+FSGSGFQ
Sbjct:   76 CEPCEKEFTTEAARQAHLQSHVPCPEKGCGFSALRKIVNNHHEAKHGQFSGSGFQ 130
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BLAST of mRNA_H-paniculata_contig28601.7792.1 vs. uniprot
Match: A0A6H5JLR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLR5_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.100e-20
Identity = 38/55 (69.09%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    1 CEPCEKDFASESAHRAHMLSHVPCPEDGCGFSASRKVISAHHSAKHGRFSGSGFQ 165
            CEPCEK+F +E+A +AH+ SHVPCPE GCGFSA RK+++ HH AKHG+ SGSGFQ
Sbjct:   59 CEPCEKEFTTETARQAHLQSHVPCPEKGCGFSALRKIVNNHHEAKHGQLSGSGFQ 113
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BLAST of mRNA_H-paniculata_contig28601.7792.1 vs. uniprot
Match: A0A8K1CJ96_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CJ96_PYTOL)

HSP 1 Score: 70.9 bits (172), Expect = 5.880e-13
Identity = 29/55 (52.73%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:    1 CEPCEKDFASESAHRAHMLSHVPCPEDGCGFSASRKVISAHHSAKHGRFSGSGFQ 165
            CE CEK FA ES H AH+ +HVPCP   C FSAS++V+ AH    HG+++G G +
Sbjct:  393 CEACEKSFAIESQHVAHLKTHVPCPSPDCEFSASKRVVGAHFQTAHGQYAGQGLK 447
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BLAST of mRNA_H-paniculata_contig28601.7792.1 vs. uniprot
Match: A0A7S4NF50_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NF50_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 5.050e-9
Identity = 25/55 (45.45%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:    1 CEPCEKDFASESAHRAHMLSHVPCPEDGCGFSASRKVISAHHSAKHGRFSGSGFQ 165
            CE C   F S SA  +H+ SH+ C    C +SAS K+++AH+S+ HG+FSG G +
Sbjct:   82 CEACNLSFPSASALTSHLSSHITCRHPSCDYSASPKLVNAHYSSAHGKFSGRGLK 136
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BLAST of mRNA_H-paniculata_contig28601.7792.1 vs. uniprot
Match: D0N2G1_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0N2G1_PHYIT)

HSP 1 Score: 56.6 bits (135), Expect = 6.210e-8
Identity = 24/55 (43.64%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:    1 CEPCEKDFASESAHRAHMLSHVPCPEDGCGFSASRKVISAHHSAKHGRFSGSGFQ 165
            CE C K F   S + AH+ +HV C +  C FSAS++V++AHH   HG+++G G +
Sbjct:  452 CETCVKSFVIASQYEAHVGTHVTCSD--CDFSASKRVVTAHHQTAHGQYAGQGLK 504
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28601.7792.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FK97_ECTSI1.700e-2170.91Zinc finger protein n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5JLR5_9PHAE1.100e-2069.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8K1CJ96_PYTOL5.880e-1352.73Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S4NF50_9STRA5.050e-945.45Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
D0N2G1_PHYIT6.210e-843.64Uncharacterized protein n=2 Tax=Phytophthora infes... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28601contigH-paniculata_contig28601:2832..2996 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.7
Seed ortholog evalue3.7e-18
Seed eggNOG ortholog2880.D7FK97
Preferred nameZC3H4
KEGG koko:K20915
KEGG Pathwayko04621,map04621
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000122,GO:0000785,GO:0000976,GO:0000977,GO:0000981,GO:0001012,GO:0001067,GO:0001161,GO:0001162,GO:0001227,GO:0001776,GO:0002260,GO:0002376,GO:0002682,GO:0002683,GO:0002694,GO:0002695,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005700,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006359,GO:0006366,GO:0006383,GO:0006401,GO:0006725,GO:0006807,GO:0007162,GO:0008023,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009301,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010941,GO:0010942,GO:0015030,GO:0016070,GO:0016073,GO:0016604,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022407,GO:0022408,GO:0030155,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033081,GO:0033085,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034660,GO:0035327,GO:0035363,GO:0042221,GO:0042592,GO:0042795,GO:0042796,GO:0042981,GO:0043029,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044212,GO:0044213,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045580,GO:0045581,GO:0045595,GO:0045596,GO:0045619,GO:0045620,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045945,GO:0046483,GO:0046677,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048872,GO:0050789,GO:0050793,GO:0050794,GO:0050863,GO:0050865,GO:0050866,GO:0050868,GO:0050896,GO:0051093,GO:0051171,GO:0051172,GO:0051173,GO:0051239,GO:0051241,GO:0051249,GO:0051250,GO:0051252,GO:0051253,GO:0051254,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070228,GO:0070230,GO:0070232,GO:0070234,GO:0070243,GO:0070245,GO:0071025,GO:0071027,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0098781,GO:0140110,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902105,GO:1902106,GO:1902679,GO:1902680,GO:1903037,GO:1903038,GO:1903506,GO:1903507,GO:1903508,GO:1903706,GO:1903707,GO:1990837,GO:2000026,GO:2000106,GO:2000108,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.pre-mRNA cleavage required for polyadenylation
EggNOG OGsCOG5084@1,KOG1040@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929869.9646504-CDS-H-paniculata_contig28601:2831..29961622929869.9646504-CDS-H-paniculata_contig28601:2831..2996Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28601 2832..2996 +
1691481047.3390884-CDS-H-paniculata_contig28601:2831..29961691481047.3390884-CDS-H-paniculata_contig28601:2831..2996Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28601 2832..2996 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28601.7792.1prot_H-paniculata_contig28601.7792.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28601 2832..2996 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28601.7792.1

>prot_H-paniculata_contig28601.7792.1 ID=prot_H-paniculata_contig28601.7792.1|Name=mRNA_H-paniculata_contig28601.7792.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=55bp
CEPCEKDFASESAHRAHMLSHVPCPEDGCGFSASRKVISAHHSAKHGRFS
GSGFQ
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mRNA from alignment at H-paniculata_contig28601:2832..2996+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28601.7792.1 ID=mRNA_H-paniculata_contig28601.7792.1|Name=mRNA_H-paniculata_contig28601.7792.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=165bp|location=Sequence derived from alignment at H-paniculata_contig28601:2832..2996+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCGAGCCGTGCGAAAAGGACTTCGCGTCCGAGAGTGCACACCGAGCCCA
CATGCTTTCCCATGTACCTTGTCCCGAGGACGGTTGCGGGTTTTCGGCGA
GTCGCAAGGTGATCAGTGCTCATCACAGCGCCAAGCACGGCCGATTCAGT
GGATCTGGGTTCCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig28601:2832..2996+

>mRNA_H-paniculata_contig28601.7792.1 ID=mRNA_H-paniculata_contig28601.7792.1|Name=mRNA_H-paniculata_contig28601.7792.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at H-paniculata_contig28601:2832..2996+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCGAGCCGTGCGAAAAGGACTTCGCGTCCGAGAGTGCACACCGAGCCCA
CATGCTTTCCCATGTACCTTGTCCCGAGGACGGTTGCGGGTTTTCGGCGA
GTCGCAAGGTGATCAGTGCTCATCACAGCGCCAAGCACGGCCGATTCAGT
GGATCTGGGTTCCAGTGCGAGCCGTGCGAAAAGGACTTCGCGTCCGAGAG
TGCACACCGAGCCCACATGCTTTCCCATGTACCTTGTCCCGAGGACGGTT
GCGGGTTTTCGGCGAGTCGCAAGGTGATCAGTGCTCATCACAGCGCCAAG
CACGGCCGATTCAGTGGATCTGGGTTCCAG
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