mRNA_H-paniculata_contig28562.7780.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28562.7780.1
Unique NamemRNA_H-paniculata_contig28562.7780.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28562.7780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28562contigH-paniculata_contig28562:1599..2775 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size425
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28562.7780.1prot_H-paniculata_contig28562.7780.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28562 1604..2736 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929868.2917273-UTR-H-paniculata_contig28562:1598..16031622929868.2917273-UTR-H-paniculata_contig28562:1598..1603Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28562 1599..1603 +
1691481046.5029845-UTR-H-paniculata_contig28562:1598..16031691481046.5029845-UTR-H-paniculata_contig28562:1598..1603Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28562 1599..1603 +
1622929868.3654516-UTR-H-paniculata_contig28562:2736..27751622929868.3654516-UTR-H-paniculata_contig28562:2736..2775Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28562 2737..2775 +
1691481046.539481-UTR-H-paniculata_contig28562:2736..27751691481046.539481-UTR-H-paniculata_contig28562:2736..2775Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28562 2737..2775 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929868.3094594-CDS-H-paniculata_contig28562:1603..16501622929868.3094594-CDS-H-paniculata_contig28562:1603..1650Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28562 1604..1650 +
1691481046.5130851-CDS-H-paniculata_contig28562:1603..16501691481046.5130851-CDS-H-paniculata_contig28562:1603..1650Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28562 1604..1650 +
1622929868.3273146-CDS-H-paniculata_contig28562:2016..22001622929868.3273146-CDS-H-paniculata_contig28562:2016..2200Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28562 2017..2200 +
1691481046.52171-CDS-H-paniculata_contig28562:2016..22001691481046.52171-CDS-H-paniculata_contig28562:2016..2200Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28562 2017..2200 +
1622929868.3394747-CDS-H-paniculata_contig28562:2586..27361622929868.3394747-CDS-H-paniculata_contig28562:2586..2736Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28562 2587..2736 +
1691481046.5301397-CDS-H-paniculata_contig28562:2586..27361691481046.5301397-CDS-H-paniculata_contig28562:2586..2736Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28562 2587..2736 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28562.7780.1

>prot_H-paniculata_contig28562.7780.1 ID=prot_H-paniculata_contig28562.7780.1|Name=mRNA_H-paniculata_contig28562.7780.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=127bp
MNDIPVESAKMDIPPRYSNMGDAVISLGAESNQIMETVLDRAIRVEVFVT
SSDGAREEVARRAETAFLALYKEAKFKASSPANEVLIRHGILPDGVPVDT
TQWWQQKWKGNVPLQRLRDRQRSTIV*
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mRNA from alignment at H-paniculata_contig28562:1599..2775+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28562.7780.1 ID=mRNA_H-paniculata_contig28562.7780.1|Name=mRNA_H-paniculata_contig28562.7780.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1177bp|location=Sequence derived from alignment at H-paniculata_contig28562:1599..2775+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATTGATGAACGACATACCTGTGGAGAGTGCCAAGATGGATATACCACCC
AGGTGTTGCCTGTTCCTCGTTAACAAGTGAAAATAGTTGTTACTACTCAA
CAGGGTTGTGGTTCATGTTTGCACATTCCTCATTTTAAGGCTGCATGTTT
TTCTCTTCTATGTGGTTGTTGTTATTGGAGCGCTCTACAACCATTACGAG
CATGATAGTAACTAGAGAACTGATGTTGGGGCGTCATTGTAACCATCTAA
AATAAGCCTTGTGTTGACACGCCGTACAGACACCACCACGAGATACCTGC
TATATGACAATGAGGTATACTGGTTAGGCCTTGGTCATGTACTTGGCAAA
AGTCCCTTCTTTTTGCCAACTTATCGTCAGTACTACTGATAATGCCTTGT
TCCTATTTGGTATGGCAGGTACTCCAACATGGGAGATGCAGTCATCTCGC
TGGGCGCTGAGAGTAATCAAATTATGGAGACGGTGCTTGATCGTGCGATA
CGGGTTGAGGTCTTCGTGACTTCTTCTGATGGTGCGCGAGAAGAGGTTGC
AAGGCGAGCAGAAACAGCTTTCTTGGCGCTTTACAAGGAGGCGAAATTCA
AGGTCAGTACAGAGTGGGAGATTGTCCAATGTTTGGTGTGGTGTTGTGCA
CGACAGTCATCAACATCTACAAGTAAATGCGTTGCGCAAGCACTATCACT
ATCTGCAGTACCAAACAGCTGAGCCAGTTATGAAAACTTTGTGAACGCCG
ATTGACAGAGATGCCTTAGCAGTAGTGGCACCCGAAGAAAGCCACTCAAG
GCTTGGACAACAGAACGTATTAATGAACGGAAGCCGAATTGTTGTTTAGT
TGACATTGGTGCGTGTTGAGAAGCTGTTTTGTTCGCGCTGCCGTTTCTTG
ATGATGCAGACACTTTTTATTATGTTGTGTATGATACGTACGTTGACTAC
TATGTAATATATTCCTCCATGCTCCCCTTGTCATACAGGCATCATCCCCG
GCCAATGAGGTTCTCATTCGCCATGGCATTCTACCGGATGGGGTCCCAGT
TGATACAACGCAATGGTGGCAGCAGAAGTGGAAAGGCAATGTGCCACTTC
AAAGGCTCAGAGACCGGCAGAGATCAACGATAGTTTGAACACTTATGAGC
TTAATGAAGAAAAACACAAGGCCCAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig28562:1599..2775+

>mRNA_H-paniculata_contig28562.7780.1 ID=mRNA_H-paniculata_contig28562.7780.1|Name=mRNA_H-paniculata_contig28562.7780.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at H-paniculata_contig28562:1599..2775+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACGACATACCTGTGGAGAGTGCCAAGATGGATATACCACCCAGATG
AACGACATACCTGTGGAGAGTGCCAAGATGGATATACCACCCAGGTACTC
CAACATGGGAGATGCAGTCATCTCGCTGGGCGCTGAGAGTAATCAAATTA
TGGAGACGGTGCTTGATCGTGCGATACGGGTTGAGGTCTTCGTGACTTCT
TCTGATGGTGCGCGAGAAGAGGTTGCAAGGCGAGCAGAAACAGCTTTCTT
GGCGCTTTACAAGGAGGCGAAATTCAAGGTACTCCAACATGGGAGATGCA
GTCATCTCGCTGGGCGCTGAGAGTAATCAAATTATGGAGACGGTGCTTGA
TCGTGCGATACGGGTTGAGGTCTTCGTGACTTCTTCTGATGGTGCGCGAG
AAGAGGTTGCAAGGCGAGCAGAAACAGCTTTCTTGGCGCTTTACAAGGAG
GCGAAATTCAAGGCATCATCCCCGGCCAATGAGGTTCTCATTCGCCATGG
CATTCTACCGGATGGGGTCCCAGTTGATACAACGCAATGGTGGCAGCAGA
AGTGGAAAGGCAATGTGCCACTTCAAAGGCTCAGAGACCGGCAGAGATCA
ACGATAGTTTGAGCATCATCCCCGGCCAATGAGGTTCTCATTCGCCATGG
CATTCTACCGGATGGGGTCCCAGTTGATACAACGCAATGGTGGCAGCAGA
AGTGGAAAGGCAATGTGCCACTTCAAAGGCTCAGAGACCGGCAGAGATCA
ACGATAGTTTGA
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