mRNA_H-paniculata_contig2854.7775.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2854.7775.1
Unique NamemRNA_H-paniculata_contig2854.7775.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2854.7775.1 vs. uniprot
Match: A0A0L9VQR0_PHAAN (Integrase catalytic domain-containing protein n=1 Tax=Phaseolus angularis TaxID=3914 RepID=A0A0L9VQR0_PHAAN)

HSP 1 Score: 122 bits (306), Expect = 1.360e-32
Identity = 58/135 (42.96%), Postives = 86/135 (63.70%), Query Frame = 1
Query:    7 FRQFCAENGIKPEFSATYTPRQNGEAERSWHSIFEIARTSMIMANMGRRYWA*AVRSAVYCLNRAPTRPGNGGMPSEIWHGEISKLDHLRVFGSMAYVIFQSQQRCRLDDKAWAGVFLGYDEDNPSYRIYNPENK 411
            F++FC E+GI+ E +   TP+ NG AER   ++ E A++  + + + +++WA AV +A Y +NR+P+ P    +P E+W G+  KL HLRVFG +AYV    Q R +LD K+    FLGY ED   YRI++ ENK
Sbjct:   26 FKKFCYEHGIRMERTVPSTPQHNGVAERMNRTLTERAKSMRVQSGLPKQFWAEAVNTAAYLINRSPSVPLEHKIPEEVWSGKEVKLSHLRVFGCVAYVHISDQVRNKLDPKSKKCTFLGYGEDEFGYRIWDDENK 160          
BLAST of mRNA_H-paniculata_contig2854.7775.1 vs. uniprot
Match: UPI001025AD12 (DDE-type integrase/transposase/recombinase n=1 Tax=Enterobacter cloacae complex sp. CH23B TaxID=2511986 RepID=UPI001025AD12)

HSP 1 Score: 120 bits (300), Expect = 5.240e-31
Identity = 56/137 (40.88%), Postives = 78/137 (56.93%), Query Frame = 1
Query:    1 KPFRQFCAENGIKPEFSATYTPRQNGEAERSWHSIFEIARTSMIMANMGRRYWA*AVRSAVYCLNRAPTRPGNGGMPSEIWHGEISKLDHLRVFGSMAYVIFQSQQRCRLDDKAWAGVFLGYDEDNPSYRIYNPENK 411
            K F+ FC   GIK E +A Y P QNG AER   S+ E+AR  +    +   +W  A+  A Y LNR PT+      P E WH     ++H+RVFG +AY +    QR +LDDKA   +F+GY  ++  YR+Y+P+ K
Sbjct:   50 KAFQDFCESKGIKRELTAPYNPPQNGVAERKNRSLTEMARCMVKSQALPHSFWLEAIMCATYVLNRCPTKALQPITPYEAWHDRKPSIEHMRVFGCLAYALVPQTQRGKLDDKAVKCIFVGYSAESKGYRLYHPQTK 186          
BLAST of mRNA_H-paniculata_contig2854.7775.1 vs. uniprot
Match: A0A2I0WJT9_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0WJT9_9ASPA)

HSP 1 Score: 119 bits (297), Expect = 1.550e-30
Identity = 51/131 (38.93%), Postives = 79/131 (60.31%), Query Frame = 1
Query:    7 FRQFCAENGIKPEFSATYTPRQNGEAERSWHSIFEIARTSMIMANMGRRYWA*AVRSAVYCLNRAPTRPGNGGMPSEIWHGEISKLDHLRVFGSMAYVIFQSQQRCRLDDKAWAGVFLGYDEDNPSYRIYN 399
            F  FC E G++ + +  YTP+QNG  ER   ++ E+AR+ +I  ++ +++WA AV +AVY LNR PT+      P E W G+   +DH R+FG + YV    Q+R +L++K   G+FLGY   +  Y  +N
Sbjct:   69 FEDFCKEEGLEHQLTVAYTPQQNGVTERKNRTVMEMARSMLIAKDIPKKFWAEAVNTAVYVLNRCPTKAVKDITPIEAWSGDKPSVDHFRIFGCLCYVHIPKQKRHKLEEKPDKGIFLGYSSQSKGYIFFN 199          
BLAST of mRNA_H-paniculata_contig2854.7775.1 vs. uniprot
Match: A0A4Y1RF43_PRUDU (Transposable element protein n=4 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RF43_PRUDU)

HSP 1 Score: 120 bits (301), Expect = 2.850e-30
Identity = 58/137 (42.34%), Postives = 84/137 (61.31%), Query Frame = 1
Query:    7 FRQFCAENGIKPEFSATYTPRQNGEAERSWHSIFEIARTSMIMANMGRRYWA*AVRSAVYCLNRAPTRPGNGGMPSEIWHGEISKLDHLRVFGSMAYVIFQSQQRCRLDDKAWAGVFLGYDEDNPSYRIYNPENKSA 417
            F++FC E GI+ E +   TP+ NG AER   ++ E AR+  I + + +++WA AV +A Y +NR P+ P    +P E+W G+  KL HL+VFG +AYV    Q R +LD K+    F+GY ED   YRI++ ENK  
Sbjct:  122 FKKFCYEQGIRMERTVPGTPQHNGVAERMNRTLTERARSIRIQSGLPKQFWAEAVNTAAYLINRGPSVPLEHRIPEEVWSGKEIKLSHLKVFGCVAYVHISDQGRNKLDPKSKKCTFIGYGEDEFGYRIWDNENKKV 258          
BLAST of mRNA_H-paniculata_contig2854.7775.1 vs. uniprot
Match: A0A6D2IM54_9BRAS (Uncharacterized protein n=2 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2IM54_9BRAS)

HSP 1 Score: 124 bits (311), Expect = 3.000e-30
Identity = 57/135 (42.22%), Postives = 87/135 (64.44%), Query Frame = 1
Query:    7 FRQFCAENGIKPEFSATYTPRQNGEAERSWHSIFEIARTSMIMANMGRRYWA*AVRSAVYCLNRAPTRPGNGGMPSEIWHGEISKLDHLRVFGSMAYVIFQSQQRCRLDDKAWAGVFLGYDEDNPSYRIYNPENK 411
            F+ +C ENGIK + +A YTP+QNG AER   SI  +AR  M+  ++ RR+W  AV+ AV+ LNR+P+       P E W      ++H+RVFG +AY +   ++R +LD+K+   VF+G  +++ +YR+YNPE K
Sbjct:  578 FQDYCRENGIKRQLTAAYTPQQNGIAERKNRSIMNMARCMMLGMSVPRRFWPEAVQYAVHVLNRSPSAALGDVTPDERWSNHKPSVEHVRVFGCVAYALVPYERRVKLDEKSIQCVFVGVSKESKAYRLYNPETK 712          
BLAST of mRNA_H-paniculata_contig2854.7775.1 vs. uniprot
Match: A0A6A1WU20_9ROSI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Morella rubra TaxID=262757 RepID=A0A6A1WU20_9ROSI)

HSP 1 Score: 120 bits (301), Expect = 5.220e-30
Identity = 55/137 (40.15%), Postives = 85/137 (62.04%), Query Frame = 1
Query:    1 KPFRQFCAENGIKPEFSATYTPRQNGEAERSWHSIFEIARTSMIMANMGRRYWA*AVRSAVYCLNRAPTRPGNGGMPSEIWHGEISKLDHLRVFGSMAYVIFQSQQRCRLDDKAWAGVFLGYDEDNPSYRIYNPENK 411
            K F +FC + G++ + +  YTP+QNG +ER   ++ E+A + ++   + + +WA AV +AVY LNR PT+      P E W G  S   HLRVFGS+ Y+   +Q+R +L++K+  G+FLGY   +  YR+YN E K
Sbjct:   30 KEFDKFCEDEGVEHQLTIAYTPQQNGVSERKNRTVMEMAISMLMEKGLPKMFWAEAVYTAVYLLNRCPTKAVQDKTPVEAWSGLKSSAKHLRVFGSICYIHIPAQRRHKLEEKSQKGIFLGYGLVSKGYRVYNLETK 166          
BLAST of mRNA_H-paniculata_contig2854.7775.1 vs. uniprot
Match: A0A8J5FC91_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5FC91_ZINOF)

HSP 1 Score: 123 bits (308), Expect = 6.060e-30
Identity = 53/133 (39.85%), Postives = 84/133 (63.16%), Query Frame = 1
Query:    4 PFRQFCAENGIKPEFSATYTPRQNGEAERSWHSIFEIARTSMIMANMGRRYWA*AVRSAVYCLNRAPTRPGNGGMPSEIWHGEISKLDHLRVFGSMAYVIFQSQQRCRLDDKAWAGVFLGYDEDNPSYRIYNP 402
            PF ++C  NGIK + + +YTP+QNG AER   +I E+AR+ +    +   YWA AV +A Y +NR+PT+  +   P E WH +   +DH ++FGS+AY +  SQ+R + D K    +F+GY+ ++  YR+ +P
Sbjct:  448 PFSEYCKANGIKRQLTTSYTPQQNGVAERKNRTIVEMARSMLKYKGIPNLYWAEAVHTAAYIMNRSPTKAVHNMTPYEAWHKKKPVVDHFKIFGSLAYALLPSQRREKFDSKGQKLIFIGYNNESKGYRLLDP 580          
BLAST of mRNA_H-paniculata_contig2854.7775.1 vs. uniprot
Match: A0A1R3HGA4_COCAP (Integrase, catalytic core n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3HGA4_COCAP)

HSP 1 Score: 123 bits (308), Expect = 7.640e-30
Identity = 55/131 (41.98%), Postives = 82/131 (62.60%), Query Frame = 1
Query:    7 FRQFCAENGIKPEFSATYTPRQNGEAERSWHSIFEIARTSMIMANMGRRYWA*AVRSAVYCLNRAPTRPGNGGMPSEIWHGEISKLDHLRVFGSMAYVIFQSQQRCRLDDKAWAGVFLGYDEDNPSYRIYN 399
            F +FC E GI+ +F+ +YTP+QNG +ER   ++ E++R  +    + +++WA AV ++VY LNR  TR  NG  P E W+G    +DHLR+FG + Y      +R +LD KA  G+FLGY  +   YR+YN
Sbjct:  421 FGKFCEEAGIEHQFTVSYTPQQNGVSERKNRTVMEMSRCLLFEKKLPKKFWAEAVSTSVYLLNRLSTRAINGKTPYEAWYGVKPSVDHLRIFGCICYAYVPEVKRDKLDHKADTGIFLGYSSNVKGYRVYN 551          
BLAST of mRNA_H-paniculata_contig2854.7775.1 vs. uniprot
Match: A0A8J5F3N7_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5F3N7_ZINOF)

HSP 1 Score: 122 bits (307), Expect = 1.040e-29
Identity = 53/133 (39.85%), Postives = 83/133 (62.41%), Query Frame = 1
Query:    4 PFRQFCAENGIKPEFSATYTPRQNGEAERSWHSIFEIARTSMIMANMGRRYWA*AVRSAVYCLNRAPTRPGNGGMPSEIWHGEISKLDHLRVFGSMAYVIFQSQQRCRLDDKAWAGVFLGYDEDNPSYRIYNP 402
            PF ++C  NGIK + + +YTP+QNG AER   +I E+AR+ +    +   YWA AV +A Y +NR+PT+  +   P E WH +   +DH ++FGS+AY +  SQ+R + D K    +F+GY  ++  YR+ +P
Sbjct:  556 PFSEYCKANGIKRQLTTSYTPQQNGVAERKNRTIVEMARSMLKYKGIPNLYWAEAVHTAAYIMNRSPTKAVHNMTPYEAWHKKKPVVDHFKIFGSLAYALLPSQRREKFDSKGQKLIFIGYSNESKGYRLLDP 688          
BLAST of mRNA_H-paniculata_contig2854.7775.1 vs. uniprot
Match: A0A8J5GP83_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5GP83_ZINOF)

HSP 1 Score: 122 bits (306), Expect = 1.370e-29
Identity = 53/133 (39.85%), Postives = 82/133 (61.65%), Query Frame = 1
Query:    4 PFRQFCAENGIKPEFSATYTPRQNGEAERSWHSIFEIARTSMIMANMGRRYWA*AVRSAVYCLNRAPTRPGNGGMPSEIWHGEISKLDHLRVFGSMAYVIFQSQQRCRLDDKAWAGVFLGYDEDNPSYRIYNP 402
            PF ++C  NGIK + + +YTP+QNG AER   +I E+AR  +    +   YWA AV +A Y +NR+PT+  +   P E WH +   +DH ++FGS+AY +  SQ+R + D K    +F+GY  ++  YR+ +P
Sbjct:  586 PFSEYCKANGIKRQLTTSYTPQQNGVAERKNRTIVEMARNMLKYKGIPNLYWAEAVHTAAYIMNRSPTKAVHNMTPYEAWHKKKPVVDHFKIFGSLAYALLPSQRREKFDSKGQKLIFIGYSNESKGYRLLDP 718          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2854.7775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0L9VQR0_PHAAN1.360e-3242.96Integrase catalytic domain-containing protein n=1 ... [more]
UPI001025AD125.240e-3140.88DDE-type integrase/transposase/recombinase n=1 Tax... [more]
A0A2I0WJT9_9ASPA1.550e-3038.93Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y1RF43_PRUDU2.850e-3042.34Transposable element protein n=4 Tax=Prunus dulcis... [more]
A0A6D2IM54_9BRAS3.000e-3042.22Uncharacterized protein n=2 Tax=Microthlaspi errat... [more]
A0A6A1WU20_9ROSI5.220e-3040.15Retrovirus-related Pol polyprotein from transposon... [more]
A0A8J5FC91_ZINOF6.060e-3039.85Integrase catalytic domain-containing protein n=1 ... [more]
A0A1R3HGA4_COCAP7.640e-3041.98Integrase, catalytic core n=1 Tax=Corchorus capsul... [more]
A0A8J5F3N7_ZINOF1.040e-2939.85Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J5GP83_ZINOF1.370e-2939.85Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2854contigH-paniculata_contig2854:14151..14570 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score66.2
Seed ortholog evalue6.3e-09
Seed eggNOG ortholog65672.G4TZK9
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Integrase core domain
EggNOG OGs22AZH@155619,38DPC@33154,3NUZ7@4751,3UY7N@5204,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelAgaricomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size420
Cds size195
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929867.5798254-CDS-H-paniculata_contig2854:14150..143451622929867.5798254-CDS-H-paniculata_contig2854:14150..14345Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2854 14151..14345 -
1691481046.2342696-CDS-H-paniculata_contig2854:14150..143451691481046.2342696-CDS-H-paniculata_contig2854:14150..14345Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2854 14151..14345 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929867.6169791-UTR-H-paniculata_contig2854:14345..145701622929867.6169791-UTR-H-paniculata_contig2854:14345..14570Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2854 14346..14570 -
1691481046.2438974-UTR-H-paniculata_contig2854:14345..145701691481046.2438974-UTR-H-paniculata_contig2854:14345..14570Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2854 14346..14570 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2854.7775.1prot_H-paniculata_contig2854.7775.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2854 14151..14345 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2854.7775.1

>prot_H-paniculata_contig2854.7775.1 ID=prot_H-paniculata_contig2854.7775.1|Name=mRNA_H-paniculata_contig2854.7775.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp
MPSEIWHGEISKLDHLRVFGSMAYVIFQSQQRCRLDDKAWAGVFLGYDED
NPSYRIYNPENKSA*
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mRNA from alignment at H-paniculata_contig2854:14151..14570-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2854.7775.1 ID=mRNA_H-paniculata_contig2854.7775.1|Name=mRNA_H-paniculata_contig2854.7775.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=420bp|location=Sequence derived from alignment at H-paniculata_contig2854:14151..14570- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGCCTTTTAGGCAATTCTGCGCGGAAAATGGCATCAAGCCGGAGTTCTC GGCCACCTACACACCGCGACAAAACGGTGAGGCTGAGCGCAGCTGGCACA GTATTTTTGAGATTGCAAGAACCAGCATGATCATGGCCAACATGGGTCGT CGATATTGGGCGTAAGCGGTGCGCTCTGCAGTGTACTGCCTAAATCGCGC CCCGACGCGACCGGGCAACGGGGGAATGCCGTCCGAAATATGGCACGGTG AGATATCAAAGTTGGACCACCTTCGCGTCTTCGGCTCCATGGCGTATGTT ATCTTCCAGTCGCAGCAGAGATGCAGGCTCGACGATAAAGCATGGGCGGG GGTGTTTCTGGGGTACGACGAGGACAACCCGAGTTATCGCATATATAACC CGGAAAACAAGAGTGCCTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig2854:14151..14570-

>mRNA_H-paniculata_contig2854.7775.1 ID=mRNA_H-paniculata_contig2854.7775.1|Name=mRNA_H-paniculata_contig2854.7775.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig2854:14151..14570- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGTCCGAAATATGGCACGGTGAGATATCAAAGTTGGACCACCTTCG
CGTCTTCGGCTCCATGGCGTATGTTATCTTCCAGTCGCAGCAGAGATGCA
GGCTCGACGATAAAGCATGGGCGGGGGTGTTTCTGGGGTACGACGAGGAC
AACCCGAGTTATCGCATATATAACCCGGAAAACAAGAGTGCCTAGATGCC
GTCCGAAATATGGCACGGTGAGATATCAAAGTTGGACCACCTTCGCGTCT
TCGGCTCCATGGCGTATGTTATCTTCCAGTCGCAGCAGAGATGCAGGCTC
GACGATAAAGCATGGGCGGGGGTGTTTCTGGGGTACGACGAGGACAACCC
GAGTTATCGCATATATAACCCGGAAAACAAGAGTGCCTAG
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