mRNA_H-paniculata_contig2838.7742.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2838.7742.1
Unique NamemRNA_H-paniculata_contig2838.7742.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2838.7742.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2838contigH-paniculata_contig2838:15203..16714 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size281
Cds size273
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2838.7742.1prot_H-paniculata_contig2838.7742.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2838 15203..16708 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929861.3520942-CDS-H-paniculata_contig2838:15202..153171622929861.3520942-CDS-H-paniculata_contig2838:15202..15317Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2838 15203..15317 -
1691481043.9330425-CDS-H-paniculata_contig2838:15202..153171691481043.9330425-CDS-H-paniculata_contig2838:15202..15317Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2838 15203..15317 -
1622929861.3718429-CDS-H-paniculata_contig2838:16550..167081622929861.3718429-CDS-H-paniculata_contig2838:16550..16708Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2838 16551..16708 -
1691481043.9423585-CDS-H-paniculata_contig2838:16550..167081691481043.9423585-CDS-H-paniculata_contig2838:16550..16708Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2838 16551..16708 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929861.3914063-UTR-H-paniculata_contig2838:16708..167141622929861.3914063-UTR-H-paniculata_contig2838:16708..16714Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2838 16709..16714 -
1691481043.9501262-UTR-H-paniculata_contig2838:16708..167141691481043.9501262-UTR-H-paniculata_contig2838:16708..16714Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2838 16709..16714 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2838.7742.1

>prot_H-paniculata_contig2838.7742.1 ID=prot_H-paniculata_contig2838.7742.1|Name=mRNA_H-paniculata_contig2838.7742.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=91bp
MAWQWAMTDVSRRDPRLGDFRGGFRSGRHWRGMGGKVGLAPDHCDERRSR
TRRMTLYVVYGARKWRQAVVLNAQRMKGGLVEGLSEWTDDT
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mRNA from alignment at H-paniculata_contig2838:15203..16714-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2838.7742.1 ID=mRNA_H-paniculata_contig2838.7742.1|Name=mRNA_H-paniculata_contig2838.7742.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1512bp|location=Sequence derived from alignment at H-paniculata_contig2838:15203..16714- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTAGCATGGCATGGCAATGGGCAATGACAGATGTCTCGCGACGTGATCC
AAGGCTTGGCGATTTTAGAGGAGGTTTCCGCAGCGGCAGGCACTGGCGCG
GAATGGGGGGTAAGGTGGGCTTGGCTCCAGACCACTGCGACGAAAGGCGA
TCTCGGACACGACGGTGAGTAAGTACACTTGACTTGATGTTTATAAGAGG
ATCACAATGCACTCTCTGGTCTGTGAAACATATTTCAGATGCCAGCTCAT
TGGATTTGAACGCAAAATGAACCCATGACAAATATGTCGGGTGAAAAGTT
GGAACTGTTTGGTTCGTACTGTGTATAGTAGCTCTAGTGTATTGTAGAGG
CCAGGTTGCGTTTGGATGCCCATTTTTGGCAATTTTGTTGGGGGGGGTCC
GTGGATGCAACTTGAGGAACACGGGCGCGTGATAAACAAGCTGCACCTAA
CGAGCAAGTCACAGGTCGGAGGGGAGCGGGGTTGGGGCCCGGGGGGGCTG
AAGTACTCAATCATTGGCACCACATAATGAGCACAATTACTGTTGTCCTC
GACAAGCTGAAATCAAATGGATAGCTACGCACACCCCTAATCCGTGCTGA
GGGTGGCTGCTCGTTTTATCAACTCAGCCTACCCTGAAGTAGACGCTTTG
ACCCGCATTAAATTGCATTTGTAAACTAAACATGAACAATTGGTGCGCCT
ACTCCCTCTACTCTGTTTTTATACACGACTATCTGTTGCCAATCTGAAAT
TCACTGAAGGCAAGCAACCTTTCGACAGCACACAAGCTCAGGCTGCACAC
AGACACTTCAAGAATGAGTTCCGATACGATAATGTTGAGAATATGTCCTC
GGTAATGGCTTGTGTTTTTCTTTTACTTAATTTTTTTTTTTCACGATCGT
GTTGAAATCGTCAACGTTACATGAAAGTAACGGTTGGTTGTGCGCCGAAT
ATATGTAAAAAACGCAAAGCAAAGCGGTGGTAGGAGCCATTTTCTCAGTA
AAATAGCGTAGTAATTGTTCACATCAGAACGAATCATCAGCAAGTCACAG
TAAGTGGCTGTTGTGTTTCCCTGATGTTAGCCTCCAAGGCAAGCGATTCA
TTCAAAGCACTTCGCCCTCAAATATGAGCCCAGGGCGGTGGGAAGAAAAT
GCCGTTTCAAGATTTTGAAGTGGACAAAGTCAGGTAAGTTAAAAAAATGT
GTTCCATTGTTCGTATCGGGCCCAAGATCACCAACTGCCTCTATCTGGAG
CCCGATGCAAGTCATGGACCGCCCTTTTCCAGCTTTTCCGGATCTATTGA
ATTTTGAAAATCGAACGACGTTTTTTCCCAGATCCGGAACTCCAGCTTCT
GTACGATATGTTTTGACTGGTCACTGGCCCAACCTGTATTACGGCAGGAT
GACCTTGTATGTTGTGTATGGAGCAAGGAAATGGAGACAAGCGGTAGTTC
TTAACGCTCAAAGGATGAAGGGGGGACTGGTGGAAGGGCTCAGCGAATGG
ACTGACGATACC
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Coding sequence (CDS) from alignment at H-paniculata_contig2838:15203..16714-

>mRNA_H-paniculata_contig2838.7742.1 ID=mRNA_H-paniculata_contig2838.7742.1|Name=mRNA_H-paniculata_contig2838.7742.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at H-paniculata_contig2838:15203..16714- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCATGGCAATGGGCAATGACAGATGTCTCGCGACGTGATCCAAGGCT
TGGCGATTTTAGAGGAGGTTTCCGCAGCGGCAGGCACTGGCGCGGAATGG
GGGGTAAGGTGGGCTTGGCTCCAGACCACTGCGACGAAAGGCGATCTCGG
ACACGACGATGGCATGGCAATGGGCAATGACAGATGTCTCGCGACGTGAT
CCAAGGCTTGGCGATTTTAGAGGAGGTTTCCGCAGCGGCAGGCACTGGCG
CGGAATGGGGGGTAAGGTGGGCTTGGCTCCAGACCACTGCGACGAAAGGC
GATCTCGGACACGACGGATGACCTTGTATGTTGTGTATGGAGCAAGGAAA
TGGAGACAAGCGGTAGTTCTTAACGCTCAAAGGATGAAGGGGGGACTGGT
GGAAGGGCTCAGCGAATGGACTGACGATACCGATGACCTTGTATGTTGTG
TATGGAGCAAGGAAATGGAGACAAGCGGTAGTTCTTAACGCTCAAAGGAT
GAAGGGGGGACTGGTGGAAGGGCTCAGCGAATGGACTGACGATACC
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