mRNA_H-paniculata_contig2821.7701.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2821.7701.1
Unique NamemRNA_H-paniculata_contig2821.7701.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2821.7701.1 vs. uniprot
Match: D8LBH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBH1_ECTSI)

HSP 1 Score: 246 bits (627), Expect = 3.010e-68
Identity = 181/451 (40.13%), Postives = 250/451 (55.43%), Query Frame = 1
Query: 1102 IERGAEQLPSDWVVMSAAQAAQATRMLELETERNEALESTVRKQRRDRVVIYDAAMKQAAKREEVYLSEAKQILQREQSTMRAEVDKEMGKVQELYEERCRDYGQMVSDECEGAVSKKVDDLRKDWARQKKTIAQLVKEGDGEDREVTVIVRAVMEQLGEEKKXXXXXXXXXXXXXXXXXXXXXXXXMQDTLKSEHQLDLDGQLLLAEIEHQKDLGRLETELTRGAVGENCGDAATVSIVPFQSERTRRKGGADRGAAFGLNAYPCTPSPSISRR-VGVLEGREVSLGRVGVGGHERCASGIGRRGLVGKLPAFKLPSRKDSHGDDSNEHDDGKNKTARDTKKSPKDTASKPHCQPHARMKGASRLFSTAGRKRSAKGNESSAAVQDALNSKGDETSKNVEEGITSALMVSPTKSVAGIATVTPSVVDAAIAK---PSRPKKKGKKLFAPD 2442
            +E G E+  S W+++S  Q  Q    +  + E+N+ALE+TV+  +R+RV+IYDAAMKQAAKRE   ++E KQ+L+R+Q  MRAEVD+EM K+ +LY+ERCRDY  MVSDEC+G  SK   DLRKDWARQKKTI QLV+ G  EDR+V+VI RAV+EQL EE++                        ++DTL+S+ Q DLDGQLLLAEI HQK++ RL  EL      +   +A T  IV +  E  +  G   R +  G +++  TPSPS SRR +  +   E S G  G  G     +  G + L  K P FK P +K   G  + +    K    RD+ + P++                           S+ G  +  +    +  + DE    ++ GITSALMVSPTK++ G+  VTPS+           SRPKK+ KKLF+ +
Sbjct:   80 VEGGKERHQSKWMIVSKEQVEQTAEKMRDQAEKNKALETTVKIHKRERVLIYDAAMKQAAKRELEGVNEVKQVLERQQGMMRAEVDQEMQKISDLYQERCRDYATMVSDECDGEDSKAATDLRKDWARQKKTIDQLVRSGGEEDRQVSVIARAVVEQLQEERRDEIASLRAAIYSDVKMEFESREVALRDTLESDFQADLDGQLLLAEIRHQKEMNRLRVELAGSE--KPTTEAKTGEIVVYNPETPQCAGRGQRSS--GTSSF--TPSPSFSRRPLHKMNISEASGGNSGADGVHVPTTPRGTQ-LGRKFPVFKTPVQKQIPGASNKKAVRPKEHPVRDSTRQPRN---------------------------SSVGRHTEISTTTPIREQEDE----LDVGITSALMVSPTKAIYGV--VTPSIGSEGEVSGEGSSRPKKRAKKLFSTE 490          
BLAST of mRNA_H-paniculata_contig2821.7701.1 vs. uniprot
Match: A0A6H5KNT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNT9_9PHAE)

HSP 1 Score: 239 bits (610), Expect = 4.750e-65
Identity = 182/449 (40.53%), Postives = 244/449 (54.34%), Query Frame = 1
Query: 1102 IERGAEQLPSDWVVMSAAQAAQATRMLELETERNEALESTVRKQRRDRVVIYDAAMKQAAKREEVYLSEAKQILQREQSTMRAEVDKEMGKVQELYEERCRDYGQMVSDECEGAVSKKVDDLRKDWARQKKTIAQLVKEGDGEDREVTVIVRAVMEQLGEEKKXXXXXXXXXXXXXXXXXXXXXXXXMQDTLKSEHQLDLDGQLLLAEIEHQKDLGRLETELTRGAVGENCGDAATVSIVPFQSERTRRKGGADRGAAFGLNAYPCTPSPSISRR-VGVLEGREVSLGRVGVGGHERCASGIGRRGLVGKLPAFKLPSRKDSHGDDSNEHDDGKNKTARDTKKSPKDTASKPHCQPHARMKGASRLFSTAGRKRSAKGNESSAAVQDALNSKGDETSKNVEEGITSALMVSPTKSVAGIATVTPSVVDAAIAK---PSRPKKKGKKLFA 2436
            +E G E   S W+++S  Q  Q  + +  + E+N+ALE+TV+  +R+RV+IYDAAMKQAAKRE   + E KQ+L+R+Q  MRAEVD+EM K+ +LY+ERCRDY +MVSDEC+G  SK V DLRKDWARQKKTI QLV+    EDR+V+ I RAV+EQL EE+                         ++DTL+S+ Q DLDGQLLLAEI HQK++ RL  EL      +   +A T  I+ +  E  +  G   R +  G +++  T SPS SRR +  +   E S G  G GG     +  G + L  K P FK P +K   G          NK A                    R KG     ST   + S+ G  +  +    +    D     ++ GITSALMVSPTK++ G+  VTPS+           SRPKK+ KKLF+
Sbjct:  160 VEGGKEHYQSKWMIVSKEQVEQTAKKMRDQAEKNKALETTVKSHKRERVLIYDAAMKQAAKRELEGVDEVKQVLERQQGMMRAEVDQEMRKISDLYQERCRDYARMVSDECDGEDSKAVTDLRKDWARQKKTIDQLVRSSREEDRQVSAIARAVVEQLQEERSDEIASLRAAIYSDVKMEFESREVALRDTLESDFQADLDGQLLLAEIRHQKEMNRLRVELAGSE--KPTTEAKTSEIIVYNPETLQCAGSGQRSS--GASSF--TASPSFSRRHLHKMNIGEASGGNSGAGGVHVPTTPRGTQ-LGRKFPVFKTPVQKKIPGIG--------NKKA-------------------VRPKGHPVSDSTRKSRNSSAGRHTKISTITPIREHED----YLDVGITSALMVSPTKAIHGV--VTPSIGSEGGVSGEGSSRPKKRAKKLFS 568          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2821.7701.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBH1_ECTSI3.010e-6840.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNT9_9PHAE4.750e-6540.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2821contigH-paniculata_contig2821:11384..16934 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_003990.1
Exons6
Model size2853
Cds size2355
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2821.7701.1prot_H-paniculata_contig2821.7701.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2821 11783..16835 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929856.4378266-UTR-H-paniculata_contig2821:11383..117821622929856.4378266-UTR-H-paniculata_contig2821:11383..11782Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2821 11384..11782 -
1691481041.788807-UTR-H-paniculata_contig2821:11383..117821691481041.788807-UTR-H-paniculata_contig2821:11383..11782Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2821 11384..11782 -
1622929856.536628-UTR-H-paniculata_contig2821:16835..169341622929856.536628-UTR-H-paniculata_contig2821:16835..16934Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2821 16836..16934 -
1691481041.8612537-UTR-H-paniculata_contig2821:16835..169341691481041.8612537-UTR-H-paniculata_contig2821:16835..16934Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2821 16836..16934 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929856.4512942-CDS-H-paniculata_contig2821:11782..121131622929856.4512942-CDS-H-paniculata_contig2821:11782..12113Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2821 11783..12113 -
1691481041.8010907-CDS-H-paniculata_contig2821:11782..121131691481041.8010907-CDS-H-paniculata_contig2821:11782..12113Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2821 11783..12113 -
1622929856.4696262-CDS-H-paniculata_contig2821:12465..129531622929856.4696262-CDS-H-paniculata_contig2821:12465..12953Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2821 12466..12953 -
1691481041.8122458-CDS-H-paniculata_contig2821:12465..129531691481041.8122458-CDS-H-paniculata_contig2821:12465..12953Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2821 12466..12953 -
1622929856.4836693-CDS-H-paniculata_contig2821:13480..135761622929856.4836693-CDS-H-paniculata_contig2821:13480..13576Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2821 13481..13576 -
1691481041.8230388-CDS-H-paniculata_contig2821:13480..135761691481041.8230388-CDS-H-paniculata_contig2821:13480..13576Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2821 13481..13576 -
1622929856.497183-CDS-H-paniculata_contig2821:14014..140911622929856.497183-CDS-H-paniculata_contig2821:14014..14091Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2821 14015..14091 -
1691481041.832205-CDS-H-paniculata_contig2821:14014..140911691481041.832205-CDS-H-paniculata_contig2821:14014..14091Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2821 14015..14091 -
1622929856.5120745-CDS-H-paniculata_contig2821:14574..147611622929856.5120745-CDS-H-paniculata_contig2821:14574..14761Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2821 14575..14761 -
1691481041.8423963-CDS-H-paniculata_contig2821:14574..147611691481041.8423963-CDS-H-paniculata_contig2821:14574..14761Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2821 14575..14761 -
1622929856.5253108-CDS-H-paniculata_contig2821:15659..168351622929856.5253108-CDS-H-paniculata_contig2821:15659..16835Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2821 15660..16835 -
1691481041.8518379-CDS-H-paniculata_contig2821:15659..168351691481041.8518379-CDS-H-paniculata_contig2821:15659..16835Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2821 15660..16835 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2821.7701.1

>prot_H-paniculata_contig2821.7701.1 ID=prot_H-paniculata_contig2821.7701.1|Name=mRNA_H-paniculata_contig2821.7701.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=785bp
MKKIHFAGDVQQENEVSSSSSSTMEASSTQHVCASDLTHPAPQHELRDSQ
AGPGMSASTLTTAMRIGSLTGRMSSWSTLTSVQRRALPGSSDRENSNPTM
RSMGARRLSRTMAMSSTKLPPVLSTSSAAMYTNGSMSTTASEKASFQLVS
SEMQQQPTNTSATEFSSHVPASTRTVFCSTSSDITTEESPVFDSIAIQVA
RNMGHLRGTSTDRRGTPVNQSSMPMIVYAGGGQQATLDTHGKGDCGLLLG
GASASMDTVREESFSARQLVTLPLSSNNRRLGNPARFSANLAALSLPPRD
QTRSSMPHRLTEPEATATTSGLRYRTLGAAATSGIERGAEQLPSDWVVMS
AAQAAQATRMLELETERNEALESTVRKQRRDRVVIYDAAMKQAAKREEVY
LSEAKQILQREQSTMRAEVDKEMGKVQELYEERCRDYGQMVSDECEGAVS
KKVDDLRKDWARQKKTIAQLVKEGDGEDREVTVIVRAVMEQLGEEKKEET
EAIREGIYAEIRAEFEARFEAMQDTLKSEHQLDLDGQLLLAEIEHQKDLG
RLETELTRGAVGENCGDAATVSIVPFQSERTRRKGGADRGAAFGLNAYPC
TPSPSISRRVGVLEGREVSLGRVGVGGHERCASGIGRRGLVGKLPAFKLP
SRKDSHGDDSNEHDDGKNKTARDTKKSPKDTASKPHCQPHARMKGASRLF
STAGRKRSAKGNESSAAVQDALNSKGDETSKNVEEGITSALMVSPTKSVA
GIATVTPSVVDAAIAKPSRPKKKGKKLFAPDSYY*
back to top

mRNA from alignment at H-paniculata_contig2821:11384..16934-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2821.7701.1 ID=mRNA_H-paniculata_contig2821.7701.1|Name=mRNA_H-paniculata_contig2821.7701.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5551bp|location=Sequence derived from alignment at H-paniculata_contig2821:11384..16934- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTTGTACAAGCTTCAAAAGCAGTTTCCTCTTGGGACCCCCACGCAAGAG AAAGTACAAGTAACATACTACACGCTGCGGCTGTGTGACGTACTGTGTAA TGAAGAAGATTCATTTTGCTGGTGATGTACAGCAAGAAAATGAAGTAAGC TCTAGCTCTTCTTCTACCATGGAAGCTTCGTCGACACAACACGTGTGCGC GTCGGACTTGACTCATCCTGCTCCACAGCATGAGCTTCGAGATAGCCAGG CTGGCCCCGGCATGAGCGCATCCACGTTGACCACCGCCATGAGGATTGGT TCGTTGACAGGACGAATGTCGTCCTGGAGTACCTTGACTTCAGTTCAGAG AAGGGCGTTGCCCGGCAGTTCCGACCGGGAGAACTCCAATCCCACTATGC GCAGTATGGGTGCACGCAGGTTGTCCCGCACCATGGCCATGTCTTCGACA AAGCTGCCCCCAGTCCTTTCGACCAGTTCTGCTGCTATGTATACAAATGG CAGTATGTCAACCACAGCATCAGAAAAGGCTTCATTTCAGCTTGTGTCGT CTGAGATGCAGCAGCAACCAACCAATACGTCTGCCACCGAGTTTTCCTCT CACGTGCCTGCGTCCACCAGAACTGTTTTTTGTAGCACTTCGAGCGACAT CACGACGGAAGAATCGCCTGTATTTGACAGCATCGCCATTCAAGTAGCGA GAAATATGGGACATCTACGTGGTACTTCTACTGACAGAAGAGGAACGCCT GTAAACCAGAGTTCGATGCCGATGATAGTGTATGCAGGAGGAGGCCAGCA AGCAACACTCGACACCCATGGAAAGGGGGATTGCGGACTACTACTCGGTG GTGCAAGTGCGTCCATGGATACCGTGAGGGAGGAATCTTTCTCGGCTCGT CAGCTCGTCACGTTGCCGTTGTCAAGCAACAACAGGAGGCTCGGCAACCC TGCTCGTTTCAGCGCCAATCTTGCTGCCCTGTCATTGCCTCCGCGTGACC AGACAAGGAGCAGCATGCCGCACCGTTTGACCGAACCGGAAGCCACCGCA ACCACGTCAGGCCTCCGGTACAGAACACTTGGTGCAGCCGCTACGTCGGG CATCGAGAGAGGGGCAGAACAACTGCCATCGGACTGGGTGGTGATGTCAG CCGCGCAAGCTGCGCAGGCTACTAGGATGCTCGAGCTAGAGACCGAGAGG AACGAGGCACTAGAGTCTACTGTCCGGAAGCAACGACGAGATAGGGTAGT TATCTACGATGCCGCCATGAAGCAAGTGAGGAAAACGTACCAAAAACAAT TAAGCAAGTGTTCAATATTCGACCCAAGGACCCGCTACCCTAATCCCCTC GGCAGATGAGAAGCAAAGAATATAGCACACTTCCCCCTAGAGTAACAAAA AAATCGGAACATACAGCAATATCACAGTATATCGCCATTCAGTTGGCTTC TGATGGACTCAGAATTTGAAGTATCGTTCAACCGGTTTTGTAGTTTTTGG GCTCAACTGAAGTTTGCACTCACCTTCACTACGGGTTGATGGTAACGAAT TGCCTCTTGCAAACAGTGGGGAGTATCAATGGTAATCGGTGTGTTTTTTG CAGATTGATTATCAGTGGGCACAGTTTTTGGTTACAAGACCCCAAAAGTT CAACATTTCCATTTTCAGTATAAATTTATGACATTTTTCGAGCTGCCACA AGACAAATCGGAAATTTCTTCAAATGTGAAAGTTCGAATCATTCGAATAT GGCGATAGATAAAAAGGGCGAAGCGTTTGAGGATTTCGGGATTCCATATC TCACAAATCTATATGTCCGCTAGCTGTTATTTTGAAGGGCACACATTTCG GTTGTTATTTTGAGAGAAAACACCCGCCAGGAATACATAACCACCATCCC CGCCAGTTGAGTAAAACTTTGGAAAGCACTTACTCAACTCGAAGCAACCA CTCTCACTATCGCACGCGCGGCCCAGGAAGGTTCGGTTTCCAGGTGTTGA TGTCGTACCTGTGCTGCTGCACGCTCTGTTATCGGTCAAAGAGGTCAGCT TAGAGGATAATAAGCCTATCTCGCACCCGAGTGATTTGAATTCACGATGC GTGTTGGAACGTCACGCTGTCTGTTATAGATGATATCGCGGCACCTACCT TTCTTCTTTCTCACAAACCCAAGGCGGCGAAGAGGGAAGAAGTGTATTTG TCGGAGGCAAAGCAGATTCTACAGCGAGAGCAGAGTACAATGAGGGCAGA GGTAGACAAGGAGATGGGGAAGGTCCAAGAGCTCTATGAAGAGCGCTGTC GCGACTACGGGCAGATGGTTTCCGATGAGTGCGAGGGCGCGGTCTCGAAG AAGGTCGACGGTGAGGGAGTTGTCTAACTTTGTGCACTTCTGTTCTGACA CGGTGAAGGGCAATGAAGGAGGCGCGTGGTAAGAGAGCTAGTGGTCGTTA CAGGTTCTCAATCCAATTTACCAAGTGATTTCGGAGAAAATTAATGCGTG GAGAGAAGCCTGGCCCTAAATATTCCCGTCTGACTAAAACGTGACCGGGC TATGATGCCATGTTGTATTCCTGGTAGCAAACCTAGCGCATAGTGTAGTT AGAATTGAAAGTTTCCCACGCATCGGGTGGAAATGGATTCGCTCTTGTCT ATTTGGTACCACCCCACTCGTGAGTATATTTTCTGACACGGGGGACGGAA AAAAAGCTCAAGACAAAAACATTGTACATTGCAATATTGCGACCCTCAAA CACTGTTTGGGGCAATGGTGAATTCAAGCAACCTGTTGCATCTCTCTCTC TCTCTCTCTCTCTCTCGTTCAACGGTGTATGTGCTCCCTATAGATTTACG CAAGGACTGGGCACGACAGAAGAAGACAATCGCGCAGCTCGTGAAAGAGG GCGATGGAGAAGATCGAGAAGCAAGTACACAATAAAAGTATAATTCTCCT TCAATAGCTTGTTTCACGAACCTATTTTGCGGCGCTTACAACCACGTTAT GGATTCGCGTCATTTGATGCTCTGGCTTCTCGTGTGTATGAATTCCCTCT ATAATCTTCACGTCAGCCAGGGGTGGTGCTTGAACATGAGGCATCTGTGC TGTGCATACGGGTCGCAGTACAGTACTAGATTTTTTTGTTTCCGAATCCG TTCACTTTATCTCGACCTCGTTACGGTGTACCGAGACGTGCTGACCCAGG GCGATGTCCTCTGGGAAATGGGCTCTAGTCGCATTTTGTTGCACGCCTGC CCCTGCCGTTTCCTGCGTTACAGTGACCAAGTACTCGGCGGCTTCAGTGG TCCCAAATGATTGTGATAGCTCACATGTAACGTCTCCCGTTCGAGGTCAT CCTATCAGGTGACCGTGATAGTCAGGGCGGTTATGGAGCAGCTAGGAGAA GAAAAGAAGGAGGAAACCGAGGCTATTCGGGAAGGGATTTACGCCGAAAT CAGGGTACGATGATCCAAGCAGTCCGAAGAGTTTATCCCTGCGTCAGTTC TTATTTGAAAAATACACACTGATGATCTCGAGGATCTATATAACTAGTTT GGCGACACACGTATCTTTGCTGCGTTCGCGGTCTCGGGTTAGTTTCTTTA TGGTTTTTGTGCTCTCATGTCTCGTACCGCGTCCACGCGTTCACTTGTCA AGTAATGCGTGCCTGCACGTTCTGCTGCTGAGATACCTTTAAACTCGTCC TGACAGAGCCGCTGGGACGGAGGTATTGCACGGCATGAGGGTGTGGAGTC GATACGTGACCGTCTCTTGCAAAGCAATATTCGTGTGAAACAAAGATACC GTTGTATGTCCTGTTTCCGGTTGGCCGGACATGCCGAGAGATGCCTCTAG TATCCACTATCAATTGCATTTATATTAACACAACATTGCCACCACATGAA TCACGTTCGTGCGCGTATCTTGCATGTCACCACCCTTACCCCCCCCTGCG CGCTCAACTGTGATCCTATCTATATCACCAGGCGGAGTTTGAAGCTCGCT TTGAGGCCATGCAAGATACCCTCAAGAGCGAGCACCAACTAGACCTGGAC GGCCAACTTCTGTTAGCTGAGATTGAGCACCAGAAAGACCTTGGCCGATT GGAGACTGAGCTCACTCGCGGCGCCGTAGGTGAAAACTGTGGCGATGCGG CAACTGTGAGCATCGTACCGTTCCAGTCTGAAAGAACTCGGCGAAAGGGA GGAGCTGATCGGGGTGCAGCGTTTGGATTGAACGCTTACCCTTGCACTCC ATCTCCGTCGATCTCACGGCGTGTTGGGGTGCTTGAAGGGAGAGAGGTCA GCCTGGGTCGCGTTGGTGTGGGTGGACATGAACGGTGCGCGTCTGGAATA GGAAGGCGTGGCCTCGTCGGGAAACTCCCTGCCTTCAAGTTGCCCTCCCG AAAAGATTCGCACGGCGATGACAGCAATGAACACGACGATGGCAAGAACA AGACGGCTAGAGATACCAAGTGAGCAGCCTTGTTGCTTACGATTACAGCT GGCTTATCCAACTTTTTGCAGTCCTCTCCGGTGTAGCGAAGTTACAGAGA AATACAACTTCCTCCGAAGAGTGGAAGCAGCGGAAAGGGTTTTTTGCCTG ACCTTCCGGGGGTTAAAAAAAAAAAAAAAAAAATTCCTCCGTGGATCCGC TAGCTGTGTATCAAAGGAATCTTTTGAATGCTACACAATTATTGGGAATG GTTTTTCCTGAAGGACGCCTGCTACGAGCACGCCTCTTAAATGTTAACTG TAAGACAGTTCGAGTTCCCCCTCCTCATATCCGCCGTCTTTCCATGCCTT GCGCTTCCTTATGCAATGCAGAAAATCGCCAAAAGACACAGCAAGCAAGC CCCATTGCCAGCCCCATGCGAGGATGAAGGGGGCATCACGACTATTCTCG ACCGCCGGGAGGAAGCGTTCGGCCAAGGGCAATGAATCTTCTGCCGCAGT ACAAGACGCACTCAATAGCAAGGGCGACGAAACAAGCAAAAACGTTGAGG AAGGGATCACCAGCGCACTCATGGTTTCGCCTACGAAGTCCGTTGCTGGG ATAGCCACCGTTACACCATCGGTTGTTGATGCTGCCATAGCGAAGCCCTC CAGACCAAAGAAAAAGGGCAAGAAACTCTTTGCACCCGACTCCTACTACT AGGTTCTGTTTAGTGGCTGATCAGCTCAGGGTTGAAAAACCAATTGTCGA TATTTATATTTATATATCTACTGGTAGTTAGAAGTACAAATAGTCAATGC AGGAGGTTCAACGGTAGATAGAGATTTTTTTGAAGCAATGGCACGATCCG CTATATGTTCCACACGGTTTTATTGTCGCGAACGATTGCCGCAGGCTACT TGGTTTTCACTTGGTGTTGCTGGGCGTACCGTACCTACCCCATGCATTCC TGCCCAGTTTCGTTTTTCTTATTCTCATTTTCGGCGGCACTCAAGATGCC GTGAGGGTTACTCCTGATAGGCGCGTTTTGTGGCGGAAAAACGGAATTTT ATCAATTGTAACATTCTCCACCTTTCAAATAAGAGCCAACATGTATTCCA C
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2821:11384..16934-

>mRNA_H-paniculata_contig2821.7701.1 ID=mRNA_H-paniculata_contig2821.7701.1|Name=mRNA_H-paniculata_contig2821.7701.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4710bp|location=Sequence derived from alignment at H-paniculata_contig2821:11384..16934- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGAAGATTCATTTTGCTGGTGATGTACAGCAAGAAAATGAAGTAAG
CTCTAGCTCTTCTTCTACCATGGAAGCTTCGTCGACACAACACGTGTGCG
CGTCGGACTTGACTCATCCTGCTCCACAGCATGAGCTTCGAGATAGCCAG
GCTGGCCCCGGCATGAGCGCATCCACGTTGACCACCGCCATGAGGATTGG
TTCGTTGACAGGACGAATGTCGTCCTGGAGTACCTTGACTTCAGTTCAGA
GAAGGGCGTTGCCCGGCAGTTCCGACCGGGAGAACTCCAATCCCACTATG
CGCAGTATGGGTGCACGCAGGTTGTCCCGCACCATGGCCATGTCTTCGAC
AAAGCTGCCCCCAGTCCTTTCGACCAGTTCTGCTGCTATGTATACAAATG
GCAGTATGTCAACCACAGCATCAGAAAAGGCTTCATTTCAGCTTGTGTCG
TCTGAGATGCAGCAGCAACCAACCAATACGTCTGCCACCGAGTTTTCCTC
TCACGTGCCTGCGTCCACCAGAACTGTTTTTTGTAGCACTTCGAGCGACA
TCACGACGGAAGAATCGCCTGTATTTGACAGCATCGCCATTCAAGTAGCG
AGAAATATGGGACATCTACGTGGTACTTCTACTGACAGAAGAGGAACGCC
TGTAAACCAGAGTTCGATGCCGATGATAGTGTATGCAGGAGGAGGCCAGC
AAGCAACACTCGACACCCATGGAAAGGGGGATTGCGGACTACTACTCGGT
GGTGCAAGTGCGTCCATGGATACCGTGAGGGAGGAATCTTTCTCGGCTCG
TCAGCTCGTCACGTTGCCGTTGTCAAGCAACAACAGGAGGCTCGGCAACC
CTGCTCGTTTCAGCGCCAATCTTGCTGCCCTGTCATTGCCTCCGCGTGAC
CAGACAAGGAGCAGCATGCCGCACCGTTTGACCGAACCGGAAGCCACCGC
AACCACGTCAGGCCTCCGGTACAGAACACTTGGTGCAGCCGCTACGTCGG
GCATCGAGAGAGGGGCAGAACAACTGCCATCGGACTGGGTGGTGATGTCA
GCCGCGCAAGCTGCGCAGGCTACTAGGATGCTCGAGCTAGAGACCGAGAG
GAACGAGGCACTAGAGTCTACTGTCCGGAAGCAACGACGAGATAGGGTAG
TTATCTACGATGCCGCCATGAAGCAAATGAAGAAGATTCATTTTGCTGGT
GATGTACAGCAAGAAAATGAAGTAAGCTCTAGCTCTTCTTCTACCATGGA
AGCTTCGTCGACACAACACGTGTGCGCGTCGGACTTGACTCATCCTGCTC
CACAGCATGAGCTTCGAGATAGCCAGGCTGGCCCCGGCATGAGCGCATCC
ACGTTGACCACCGCCATGAGGATTGGTTCGTTGACAGGACGAATGTCGTC
CTGGAGTACCTTGACTTCAGTTCAGAGAAGGGCGTTGCCCGGCAGTTCCG
ACCGGGAGAACTCCAATCCCACTATGCGCAGTATGGGTGCACGCAGGTTG
TCCCGCACCATGGCCATGTCTTCGACAAAGCTGCCCCCAGTCCTTTCGAC
CAGTTCTGCTGCTATGTATACAAATGGCAGTATGTCAACCACAGCATCAG
AAAAGGCTTCATTTCAGCTTGTGTCGTCTGAGATGCAGCAGCAACCAACC
AATACGTCTGCCACCGAGTTTTCCTCTCACGTGCCTGCGTCCACCAGAAC
TGTTTTTTGTAGCACTTCGAGCGACATCACGACGGAAGAATCGCCTGTAT
TTGACAGCATCGCCATTCAAGTAGCGAGAAATATGGGACATCTACGTGGT
ACTTCTACTGACAGAAGAGGAACGCCTGTAAACCAGAGTTCGATGCCGAT
GATAGTGTATGCAGGAGGAGGCCAGCAAGCAACACTCGACACCCATGGAA
AGGGGGATTGCGGACTACTACTCGGTGGTGCAAGTGCGTCCATGGATACC
GTGAGGGAGGAATCTTTCTCGGCTCGTCAGCTCGTCACGTTGCCGTTGTC
AAGCAACAACAGGAGGCTCGGCAACCCTGCTCGTTTCAGCGCCAATCTTG
CTGCCCTGTCATTGCCTCCGCGTGACCAGACAAGGAGCAGCATGCCGCAC
CGTTTGACCGAACCGGAAGCCACCGCAACCACGTCAGGCCTCCGGTACAG
AACACTTGGTGCAGCCGCTACGTCGGGCATCGAGAGAGGGGCAGAACAAC
TGCCATCGGACTGGGTGGTGATGTCAGCCGCGCAAGCTGCGCAGGCTACT
AGGATGCTCGAGCTAGAGACCGAGAGGAACGAGGCACTAGAGTCTACTGT
CCGGAAGCAACGACGAGATAGGGTAGTTATCTACGATGCCGCCATGAAGC
AAGCGGCGAAGAGGGAAGAAGTGTATTTGTCGGAGGCAAAGCAGATTCTA
CAGCGAGAGCAGAGTACAATGAGGGCAGAGGTAGACAAGGAGATGGGGAA
GGTCCAAGAGCTCTATGAAGAGCGCTGTCGCGACTACGGGCAGATGGTTT
CCGATGAGTGCGAGGGCGCGGTCTCGAAGAAGGTCGACGGCGGCGAAGAG
GGAAGAAGTGTATTTGTCGGAGGCAAAGCAGATTCTACAGCGAGAGCAGA
GTACAATGAGGGCAGAGGTAGACAAGGAGATGGGGAAGGTCCAAGAGCTC
TATGAAGAGCGCTGTCGCGACTACGGGCAGATGGTTTCCGATGAGTGCGA
GGGCGCGGTCTCGAAGAAGGTCGACGATTTACGCAAGGACTGGGCACGAC
AGAAGAAGACAATCGCGCAGCTCGTGAAAGAGGGCGATGGAGAAGATCGA
GAAATTTACGCAAGGACTGGGCACGACAGAAGAAGACAATCGCGCAGCTC
GTGAAAGAGGGCGATGGAGAAGATCGAGAAGTGACCGTGATAGTCAGGGC
GGTTATGGAGCAGCTAGGAGAAGAAAAGAAGGAGGAAACCGAGGCTATTC
GGGAAGGGATTTACGCCGAAATCAGGGTGACCGTGATAGTCAGGGCGGTT
ATGGAGCAGCTAGGAGAAGAAAAGAAGGAGGAAACCGAGGCTATTCGGGA
AGGGATTTACGCCGAAATCAGGGCGGAGTTTGAAGCTCGCTTTGAGGCCA
TGCAAGATACCCTCAAGAGCGAGCACCAACTAGACCTGGACGGCCAACTT
CTGTTAGCTGAGATTGAGCACCAGAAAGACCTTGGCCGATTGGAGACTGA
GCTCACTCGCGGCGCCGTAGGTGAAAACTGTGGCGATGCGGCAACTGTGA
GCATCGTACCGTTCCAGTCTGAAAGAACTCGGCGAAAGGGAGGAGCTGAT
CGGGGTGCAGCGTTTGGATTGAACGCTTACCCTTGCACTCCATCTCCGTC
GATCTCACGGCGTGTTGGGGTGCTTGAAGGGAGAGAGGTCAGCCTGGGTC
GCGTTGGTGTGGGTGGACATGAACGGTGCGCGTCTGGAATAGGAAGGCGT
GGCCTCGTCGGGAAACTCCCTGCCTTCAAGTTGCCCTCCCGAAAAGATTC
GCACGGCGATGACAGCAATGAACACGACGATGGCAAGAACAAGACGGCTA
GAGATACCAAGCGGAGTTTGAAGCTCGCTTTGAGGCCATGCAAGATACCC
TCAAGAGCGAGCACCAACTAGACCTGGACGGCCAACTTCTGTTAGCTGAG
ATTGAGCACCAGAAAGACCTTGGCCGATTGGAGACTGAGCTCACTCGCGG
CGCCGTAGGTGAAAACTGTGGCGATGCGGCAACTGTGAGCATCGTACCGT
TCCAGTCTGAAAGAACTCGGCGAAAGGGAGGAGCTGATCGGGGTGCAGCG
TTTGGATTGAACGCTTACCCTTGCACTCCATCTCCGTCGATCTCACGGCG
TGTTGGGGTGCTTGAAGGGAGAGAGGTCAGCCTGGGTCGCGTTGGTGTGG
GTGGACATGAACGGTGCGCGTCTGGAATAGGAAGGCGTGGCCTCGTCGGG
AAACTCCCTGCCTTCAAGTTGCCCTCCCGAAAAGATTCGCACGGCGATGA
CAGCAATGAACACGACGATGGCAAGAACAAGACGGCTAGAGATACCAAAA
AATCGCCAAAAGACACAGCAAGCAAGCCCCATTGCCAGCCCCATGCGAGG
ATGAAGGGGGCATCACGACTATTCTCGACCGCCGGGAGGAAGCGTTCGGC
CAAGGGCAATGAATCTTCTGCCGCAGTACAAGACGCACTCAATAGCAAGG
GCGACGAAACAAGCAAAAACGTTGAGGAAGGGATCACCAGCGCACTCATG
GTTTCGCCTACGAAGTCCGTTGCTGGGATAGCCACCGTTACACCATCGGT
TGTTGATGCTGCCATAGCGAAGCCCTCCAGACCAAAGAAAAAGGGCAAGA
AACTCTTTGCACCCGACTCCTACTACTAGAAAATCGCCAAAAGACACAGC
AAGCAAGCCCCATTGCCAGCCCCATGCGAGGATGAAGGGGGCATCACGAC
TATTCTCGACCGCCGGGAGGAAGCGTTCGGCCAAGGGCAATGAATCTTCT
GCCGCAGTACAAGACGCACTCAATAGCAAGGGCGACGAAACAAGCAAAAA
CGTTGAGGAAGGGATCACCAGCGCACTCATGGTTTCGCCTACGAAGTCCG
TTGCTGGGATAGCCACCGTTACACCATCGGTTGTTGATGCTGCCATAGCG
AAGCCCTCCAGACCAAAGAAAAAGGGCAAGAAACTCTTTGCACCCGACTC
CTACTACTAG
back to top