mRNA_H-paniculata_contig2813.7679.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2813.7679.1
Unique NamemRNA_H-paniculata_contig2813.7679.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2813.7679.1 vs. uniprot
Match: A0A6G0W7J2_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W7J2_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.140e-19
Identity = 51/125 (40.80%), Postives = 73/125 (58.40%), Query Frame = 1
Query:   31 VEPKNHREAQASPEWEHWQRAEEIEIQCLVENGVWMQVECPNNKPVVSMMMLYKRKIGEEGNVEKYKCRLVAHGNLQIKGVYFQEASSPAPAAASTKMMLLLAAIQGWELRYVDLEQAYLQAPVD 405
             EP+N +EA + P+ +HWQ + + E+  LV NG W  VE P +  VVS   +YK K   EG ++K+K RLVA G  Q  GV F +  +P    AS +++  LAA     +R++D  QAYL+A  D
Sbjct: 1080 TEPRNAKEALSGPQAKHWQESMQAELDGLVANGTWEVVERPPSGNVVSHKWVYKIKYDREGQIDKFKARLVARGFTQRYGVEFSKTFAPVIKQASVRVIFALAATLKRTVRHLDFPQAYLKAETD 1204          
BLAST of mRNA_H-paniculata_contig2813.7679.1 vs. uniprot
Match: A0A401GYH9_9APHY (Uncharacterized protein n=6 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GYH9_9APHY)

HSP 1 Score: 91.3 bits (225), Expect = 9.920e-19
Identity = 47/119 (39.50%), Postives = 68/119 (57.14%), Query Frame = 1
Query:   34 EPKNHREAQASPEWEHWQRAEEIEIQCLVENGVWMQVECPNNKPVVSMMMLYKRKIGEEGNVEKYKCRLVAHGNLQIKGVYFQEASSPAPAAASTKMMLLLAAIQGWELRYVDLEQAYL 390
            EP++  EAQASPEW  W++A + E   L   G W   + P ++  V    +++RK  +EG V KYK RLVA G  QI G+ F E  +P     S + +L LA +  WE+  +D++ AYL
Sbjct:  906 EPRSLAEAQASPEWPEWEKAVKAEYDQLQGMGTWELQDLPKDRNAVGCKWVFQRKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVRLESIRAILALAVVNNWEIGQMDVKGAYL 1024          
BLAST of mRNA_H-paniculata_contig2813.7679.1 vs. uniprot
Match: J6ERE3_TRIAS (Gag-Pol n=1 Tax=Trichosporon asahii var. asahii (strain ATCC 90039 / CBS 2479 / JCM 2466 / KCTC 7840 / NBRC 103889/ NCYC 2677 / UAMH 7654) TaxID=1186058 RepID=J6ERE3_TRIAS)

HSP 1 Score: 90.1 bits (222), Expect = 2.510e-18
Identity = 51/124 (41.13%), Postives = 69/124 (55.65%), Query Frame = 1
Query:   34 EPKNHREAQASPEWEHWQRAEEIEIQCLVENGVWMQVECPNNKPVVSMMMLYKRKIGEEGNVEKYKCRLVAHGNLQIKGVYFQEASSPAPAAASTKMMLLLAAIQGWELRYVDLEQAYLQAPVD 405
            +PK   EA A P+ E W  A + EI  LV  G W + + P +K  V+   ++KRK   +GNV KYK RLV  G  QI GV F+E  +P   + S  ++L +AA    ELR  D+E AYL   +D
Sbjct:  890 DPKTVAEALALPDAEQWIEAMKKEIDNLVGKGTWSEAKLPKHKKAVTAKWVFKRKRDADGNVVKYKARLVGRGFSQIPGVDFEETYAPVGRSTSLLLILSIAARYNLELRQADVEGAYLNGTID 1013          
BLAST of mRNA_H-paniculata_contig2813.7679.1 vs. uniprot
Match: A0A1M2VH23_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VH23_TRAPU)

HSP 1 Score: 84.0 bits (206), Expect = 3.200e-18
Identity = 45/113 (39.82%), Postives = 65/113 (57.52%), Query Frame = 1
Query:   34 EPKNHREAQASPEWEHWQRAEEIEIQCLVENGVWMQVECPNNKPVVSMMMLYKRKIGEEGNVEKYKCRLVAHGNLQIKGVYFQEASSPAPAAASTKMMLLLAAIQGWELRYVD 372
            EP+   EAQASP+W HW+ A   EI  L ++  +  VE P+N  +V    +++ K   EG++ +YK RLVA G  Q+ G+ F E  +P    AS + +L LAA   WEL  +D
Sbjct:   12 EPRTLAEAQASPDWPHWENAIAKEIDNLRKHDTYDLVEPPHNTNIVGSRFVFRIKRDAEGSITQYKARLVAQGFTQMPGIDFNETFAPVAKLASIRTILALAARYDWELEQMD 124          
BLAST of mRNA_H-paniculata_contig2813.7679.1 vs. uniprot
Match: A0A177TJ72_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tilletia caries TaxID=13290 RepID=A0A177TJ72_9BASI)

HSP 1 Score: 89.7 bits (221), Expect = 3.270e-18
Identity = 45/122 (36.89%), Postives = 67/122 (54.92%), Query Frame = 1
Query:   25 LPVEPKNHREAQASPEWEHWQRAEEIEIQCLVENGVWMQVECPNNKPVVSMMMLYKRKIGEEGNVEKYKCRLVAHGNLQIKGVYFQEASSPAPAAASTKMMLLLAAIQGWELRYVDLEQAYL 390
            + +EP   ++A   P+W  W  A + E+  L E G W+  E P+N+ VV    ++K K+  EGNV +YK RLVA G  Q+ GV + E  SP     + + +L LAA   W +  +D+  AYL
Sbjct:  286 IEIEPNTLKDAMRRPDWSLWLEAMKEEMNSLTEMGTWVLEELPDNQSVVGSRWVFKLKLDSEGNVARYKARLVAQGFSQVAGVNYNETYSPVTRFVTIRTLLALAAHFDWHVHQLDVVTAYL 407          
BLAST of mRNA_H-paniculata_contig2813.7679.1 vs. uniprot
Match: A0A392MEN3_9FABA (Retrovirus-related pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392MEN3_9FABA)

HSP 1 Score: 87.4 bits (215), Expect = 3.760e-18
Identity = 43/125 (34.40%), Postives = 74/125 (59.20%), Query Frame = 1
Query:   31 VEPKNHREAQASPEWEHWQRAEEIEIQCLVENGVWMQVECPNNKPVVSMMMLYKRKIGEEGNVEKYKCRLVAHGNLQIKGVYFQEASSPAPAAASTKMMLLLAAIQGWELRYVDLEQAYLQAPVD 405
            +EPK + +A    + + W++A +IE+Q L +N  W+ VE P+ K  +    +YK K    G++E+YK RLVA G  Q +G+ + +  SP     + +++L LAAI+GW L  +D+  A+L   ++
Sbjct:  139 IEPKTYNQAS---KLDCWRKAMDIELQDLADNQTWIVVELPSGKVPIGCKWVYKIKYHANGSIERYKARLVAKGYTQTEGIDYCDIFSPVAKITTVRVLLALAAIKGWHLEQLDVNNAFLHGDLN 260          
BLAST of mRNA_H-paniculata_contig2813.7679.1 vs. uniprot
Match: A0A5C3E5T1_9BASI (Uncharacterized protein n=2 Tax=Ustilago trichophora TaxID=86804 RepID=A0A5C3E5T1_9BASI)

HSP 1 Score: 88.6 bits (218), Expect = 8.660e-18
Identity = 45/124 (36.29%), Postives = 69/124 (55.65%), Query Frame = 1
Query:   34 EPKNHREAQASPEWEHWQRAEEIEIQCLVENGVWMQVECPNNKPVVSMMMLYKRKIGEEGNVEKYKCRLVAHGNLQIKGVYFQEASSPAPAAASTKMMLLLAAIQGWELRYVDLEQAYLQAPVD 405
            EPK   EA+  P+W HW+ A + E+  L ENG W   + P  +  V    ++K K+  +G V+KYK RLVA G  Q  GV + E  +P    A+ ++++ LAA +GW    +D+  AYL   ++
Sbjct:  829 EPKTIEEAKRRPDWPHWETAIKKELASLSENGTWTLEDLPPGRRAVGSKWVFKIKLKADGTVDKYKARLVAQGFTQQHGVDYDETFAPVLKFATLRLLIALAAQEGWLAHQMDVITAYLNGNLE 952          
BLAST of mRNA_H-paniculata_contig2813.7679.1 vs. uniprot
Match: A0A2P6RCF4_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6RCF4_ROSCH)

HSP 1 Score: 87.8 bits (216), Expect = 1.590e-17
Identity = 46/121 (38.02%), Postives = 71/121 (58.68%), Query Frame = 1
Query:   28 PVEPKNHREAQASPEWEHWQRAEEIEIQCLVENGVWMQVECPNNKPVVSMMMLYKRKIGEEGNVEKYKCRLVAHGNLQIKGVYFQEASSPAPAAASTKMMLLLAAIQGWELRYVDLEQAYL 390
            P+EPK+ R A + PEW+    A   EI  L++ G W  V  P  K +V    +YK K   +G++ +YK RLVA G  Q KG+ + E  SP    ++ ++++ LAA+  WELR +D++ A+L
Sbjct:  630 PIEPKSFRAAASIPEWDE---AMYEEIDALLKQGTWELVPLPKAKNIVGSKWIYKIKKNPDGSISRYKARLVAQGFSQEKGLDYDETFSPVVRHSTVRLVVALAAMNKWELRQLDVKNAFL 747          
BLAST of mRNA_H-paniculata_contig2813.7679.1 vs. uniprot
Match: A0A4S4LPF2_9AGAM (Integrase catalytic domain-containing protein n=1 Tax=Bondarzewia mesenterica TaxID=1095465 RepID=A0A4S4LPF2_9AGAM)

HSP 1 Score: 87.0 bits (214), Expect = 2.890e-17
Identity = 41/124 (33.06%), Postives = 70/124 (56.45%), Query Frame = 1
Query:   34 EPKNHREAQASPEWEHWQRAEEIEIQCLVENGVWMQVECPNNKPVVSMMMLYKRKIGEEGNVEKYKCRLVAHGNLQIKGVYFQEASSPAPAAASTKMMLLLAAIQGWELRYVDLEQAYLQAPVD 405
            EP+N  EA+   +W HW+ A + E+  + + G W  V+ P++  VV    ++K K G +G + KYK RLVA G  Q+ G+ + +  +P     S + +L +AA   WE+  +D++ AYL   ++
Sbjct:  347 EPRNVTEARRGSDWSHWEAAMKTELGMIEKLGTWELVDRPSDANVVGSKWVFKIKRGADGEIIKYKARLVAQGFTQVPGIDYSDTFAPVAKLESIRALLAIAARNDWEIHQMDVKNAYLNGDLE 470          
BLAST of mRNA_H-paniculata_contig2813.7679.1 vs. uniprot
Match: A0A369JJ40_HYPMA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Hypsizygus marmoreus TaxID=39966 RepID=A0A369JJ40_HYPMA)

HSP 1 Score: 87.0 bits (214), Expect = 3.020e-17
Identity = 45/121 (37.19%), Postives = 68/121 (56.20%), Query Frame = 1
Query:   43 NHREAQASPEWEHWQRAEEIEIQCLVENGVWMQVECPNNKPVVSMMMLYKRKIGEEGNVEKYKCRLVAHGNLQIKGVYFQEASSPAPAAASTKMMLLLAAIQGWELRYVDLEQAYLQAPVD 405
            ++ EA+  P+W  W+ A ++E++ L +NG W  VE P    VV    + + K    G +EKYK RLVA G  QI GV F E  +P    AS +++L +AA  GW +   D + A+L + +D
Sbjct: 1059 SYSEAKKRPDWPKWEEAIKVELENLKQNGTWELVERPAGVNVVDCKWVLRIKKNAAGEIEKYKARLVARGFTQIHGVDFYETYAPVARLASFRLLLAIAARNGWPVDSFDFDGAFLNSVLD 1179          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2813.7679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G0W7J2_9STRA1.140e-1940.80Integrase catalytic domain-containing protein n=1 ... [more]
A0A401GYH9_9APHY9.920e-1939.50Uncharacterized protein n=6 Tax=Sparassis crispa T... [more]
J6ERE3_TRIAS2.510e-1841.13Gag-Pol n=1 Tax=Trichosporon asahii var. asahii (s... [more]
A0A1M2VH23_TRAPU3.200e-1839.82Retrovirus-related Pol polyprotein from transposon... [more]
A0A177TJ72_9BASI3.270e-1836.89Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A392MEN3_9FABA3.760e-1834.40Retrovirus-related pol polyprotein from transposon... [more]
A0A5C3E5T1_9BASI8.660e-1836.29Uncharacterized protein n=2 Tax=Ustilago trichopho... [more]
A0A2P6RCF4_ROSCH1.590e-1738.02Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A4S4LPF2_9AGAM2.890e-1733.06Integrase catalytic domain-containing protein n=1 ... [more]
A0A369JJ40_HYPMA3.020e-1737.19Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2813contigH-paniculata_contig2813:5093..5500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score97.4
Seed ortholog evalue5.3e-18
Seed eggNOG ortholog28532.XP_010532348.1
Preferred nameUSP
KEGG rclassRC00002
KEGG koko:K12447
KEGG ReactionR00289,R00502,R01381,R03077,R08845
KEGG Pathwayko00040,ko00052,ko00053,ko00520,ko01100,ko01130,map00040,map00052,map00053,map00520,map01100,map01130
KEGG ModuleM00014
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003983,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006011,GO:0006082,GO:0006139,GO:0006725,GO:0006793,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009225,GO:0009226,GO:0009555,GO:0009987,GO:0010035,GO:0010038,GO:0010491,GO:0016740,GO:0016772,GO:0016779,GO:0017103,GO:0018130,GO:0019438,GO:0019752,GO:0032501,GO:0032502,GO:0033356,GO:0034641,GO:0034654,GO:0042221,GO:0042995,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046398,GO:0046483,GO:0046686,GO:0047338,GO:0047350,GO:0048229,GO:0048856,GO:0050896,GO:0051748,GO:0052573,GO:0055086,GO:0070569,GO:0071704,GO:0090406,GO:0120025,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901576
EggNOG free text desc.udp-sugar
EggNOG OGs37MVU@33090,3GGIU@35493,3HSQP@3699,COG2801@1,COG4284@1,KOG0017@2759,KOG2388@2759
EC2.7.7.64
COG Functional cat.M
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size408
Cds size408
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929853.552047-CDS-H-paniculata_contig2813:5092..55001622929853.552047-CDS-H-paniculata_contig2813:5092..5500Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2813 5093..5500 +
1691481040.4867237-CDS-H-paniculata_contig2813:5092..55001691481040.4867237-CDS-H-paniculata_contig2813:5092..5500Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2813 5093..5500 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2813.7679.1prot_H-paniculata_contig2813.7679.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2813 5093..5500 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2813.7679.1

>prot_H-paniculata_contig2813.7679.1 ID=prot_H-paniculata_contig2813.7679.1|Name=mRNA_H-paniculata_contig2813.7679.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=136bp
MPEELRSDLPVEPKNHREAQASPEWEHWQRAEEIEIQCLVENGVWMQVEC
PNNKPVVSMMMLYKRKIGEEGNVEKYKCRLVAHGNLQIKGVYFQEASSPA
PAAASTKMMLLLAAIQGWELRYVDLEQAYLQAPVD*
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mRNA from alignment at H-paniculata_contig2813:5093..5500+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2813.7679.1 ID=mRNA_H-paniculata_contig2813.7679.1|Name=mRNA_H-paniculata_contig2813.7679.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=408bp|location=Sequence derived from alignment at H-paniculata_contig2813:5093..5500+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTGAAGAACTGAGGAGCGACCTCCCCGTGGAGCCCAAGAATCACCG GGAGGCGCAGGCATCGCCTGAGTGGGAGCACTGGCAAAGAGCGGAGGAAA TCGAGATCCAATGCCTGGTCGAGAACGGGGTTTGGATGCAAGTAGAGTGC CCGAATAACAAGCCGGTCGTGAGCATGATGATGCTCTACAAAAGGAAAAT CGGCGAGGAAGGTAACGTGGAGAAATACAAGTGCCGCCTGGTCGCTCACG GGAACCTTCAGATCAAGGGCGTCTACTTCCAGGAAGCTTCGTCCCCTGCA CCCGCAGCAGCCAGCACAAAAATGATGCTTTTGCTTGCGGCAATCCAAGG CTGGGAACTTCGGTACGTCGACTTGGAACAAGCGTATCTGCAGGCACCCG TCGACTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig2813:5093..5500+

>mRNA_H-paniculata_contig2813.7679.1 ID=mRNA_H-paniculata_contig2813.7679.1|Name=mRNA_H-paniculata_contig2813.7679.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=816bp|location=Sequence derived from alignment at H-paniculata_contig2813:5093..5500+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTGAAGAACTGAGGAGCGACCTCCCCGTGGAGCCCAAGAATCACCG
GGAGGCGCAGGCATCGCCTGAGTGGGAGCACTGGCAAAGAGCGGAGGAAA
TCGAGATCCAATGCCTGGTCGAGAACGGGGTTTGGATGCAAGTAGAGTGC
CCGAATAACAAGCCGGTCGTGAGCATGATGATGCTCTACAAAAGGAAAAT
CGGCGAGGAAGGTAACGTGGAGAAATACAAGTGCCGCCTGGTCGCTCACG
GGAACCTTCAGATCAAGGGCGTCTACTTCCAGGAAGCTTCGTCCCCTGCA
CCCGCAGCAGCCAGCACAAAAATGATGCTTTTGCTTGCGGCAATCCAAGG
CTGGGAACTTCGGTACGTCGACTTGGAACAAGCGTATCTGCAGGCACCCG
TCGACTAGATGCCTGAAGAACTGAGGAGCGACCTCCCCGTGGAGCCCAAG
AATCACCGGGAGGCGCAGGCATCGCCTGAGTGGGAGCACTGGCAAAGAGC
GGAGGAAATCGAGATCCAATGCCTGGTCGAGAACGGGGTTTGGATGCAAG
TAGAGTGCCCGAATAACAAGCCGGTCGTGAGCATGATGATGCTCTACAAA
AGGAAAATCGGCGAGGAAGGTAACGTGGAGAAATACAAGTGCCGCCTGGT
CGCTCACGGGAACCTTCAGATCAAGGGCGTCTACTTCCAGGAAGCTTCGT
CCCCTGCACCCGCAGCAGCCAGCACAAAAATGATGCTTTTGCTTGCGGCA
ATCCAAGGCTGGGAACTTCGGTACGTCGACTTGGAACAAGCGTATCTGCA
GGCACCCGTCGACTAG
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