mRNA_H-paniculata_contig28106.7675.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28106.7675.1
Unique NamemRNA_H-paniculata_contig28106.7675.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig28106.7675.1 vs. uniprot
Match: A0A6H5JCJ9_9PHAE (Midasin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCJ9_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.840e-5
Identity = 28/44 (63.64%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:   88 DGYLDFHMDANVKETRSTDGPLAVVLRRVAGLLQEFRAMGVLRQ 219
            D  ++FH+D NV ETR  DGPLA VLRRVAGLL++F   GVL Q
Sbjct: 2478 DPLVNFHLDGNVAETRLADGPLASVLRRVAGLLEDFPGHGVLIQ 2521
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BLAST of mRNA_H-paniculata_contig28106.7675.1 vs. uniprot
Match: D7FL28_ECTSI (Midasin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL28_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 1.850e-5
Identity = 28/44 (63.64%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:   88 DGYLDFHMDANVKETRSTDGPLAVVLRRVAGLLQEFRAMGVLRQ 219
            D  ++FH+D NV ETR  DGPLA VLRRVAGLL++F   GVL Q
Sbjct: 3306 DPLVNFHLDGNVAETRLADGPLASVLRRVAGLLEDFPGHGVLIQ 3349
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28106.7675.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JCJ9_9PHAE1.840e-563.64Midasin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
D7FL28_ECTSI1.850e-563.64Midasin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28106contigH-paniculata_contig28106:2..1698 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1069
Cds size462
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28106.7675.1prot_H-paniculata_contig28106.7675.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28106 110..1199 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929852.8900824-UTR-H-paniculata_contig28106:1..1091622929852.8900824-UTR-H-paniculata_contig28106:1..109Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28106 2..109 +
1691481040.1504066-UTR-H-paniculata_contig28106:1..1091691481040.1504066-UTR-H-paniculata_contig28106:1..109Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28106 2..109 +
1622929852.960699-UTR-H-paniculata_contig28106:1199..16981622929852.960699-UTR-H-paniculata_contig28106:1199..1698Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28106 1200..1698 +
1691481040.190864-UTR-H-paniculata_contig28106:1199..16981691481040.190864-UTR-H-paniculata_contig28106:1199..1698Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28106 1200..1698 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929852.9257689-CDS-H-paniculata_contig28106:109..2161622929852.9257689-CDS-H-paniculata_contig28106:109..216Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28106 110..216 +
1691481040.161966-CDS-H-paniculata_contig28106:109..2161691481040.161966-CDS-H-paniculata_contig28106:109..216Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28106 110..216 +
1622929852.9403203-CDS-H-paniculata_contig28106:844..11991622929852.9403203-CDS-H-paniculata_contig28106:844..1199Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28106 845..1199 +
1691481040.1797183-CDS-H-paniculata_contig28106:844..11991691481040.1797183-CDS-H-paniculata_contig28106:844..1199Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28106 845..1199 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28106.7675.1

>prot_H-paniculata_contig28106.7675.1 ID=prot_H-paniculata_contig28106.7675.1|Name=mRNA_H-paniculata_contig28106.7675.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=154bp
MDANVKETRSTDGPLAVVLRRVAGLLQEFRAMGVLRQSDGGYISTPLTGE
WQETTEDRDGEVHNILRVQPSSMSSAPDEVSAGRLSKMSSTPDRPSATSC
FPGWLWHGLVSEQECNERGVAMNEGASGFGEASLVHEGGWMWYELLSKSA
VYP*
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mRNA from alignment at H-paniculata_contig28106:2..1698+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28106.7675.1 ID=mRNA_H-paniculata_contig28106.7675.1|Name=mRNA_H-paniculata_contig28106.7675.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1697bp|location=Sequence derived from alignment at H-paniculata_contig28106:2..1698+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGACACACGAACCCGGTTTCGGGGTAAGTGTTGGGCAAAGGTTTCCTCCC
CTCCTTTCAAGGGGAAAAAAATAAATAAAAAACAAACGACGGCTACCTGG
ATTTTCATATGGACGCGAATGTGAAGGAAACACGATCAACGGATGGGCCT
TTAGCGGTAGTGCTTCGTCGTGTGGCTGGGCTGCTGCAGGAGTTTCGGGC
CATGGGGGTTTTGAGGTGGGAAGAGCAATTTGGAGTTATTTATTATAGTA
GCATTCATGCGTGATGTTGGAACATTGGCCTTAAAAATTAAACTGCGCGT
GTTCCTCATCACCTCGCCAGCTTTGGTGCAACCCATCTAGAGATGGTTGT
GTGAGATGGCTTATTTATTGGATTTGTGATACTCCATCAATGGTACCATC
AAGCATACAATGCACTTGATTCATCAGCGACCTTTTTCAGGGCTTCTTTC
CTTTGGCCTGTAGAGATAATCTTGTGAAACAGTTGGCGAGAGTGGCCGAC
CAAGTCCGTCGCATGCCTCTTCACTTTCCTTTAGCGGCGGTATTGGCAGG
GGTTGAGCTCACCTTGCGAAGAGCGCAAGATTGGGAACAGCACGTACATC
GTGGTGTGCGCCTCACGGATGAGCTGAGAGCATTGAGCTCCTTGGTTGTG
TGATGGCGGGCTATCGAGTTCAAGAGCTCGCTGCTGCTACTTGATAGACG
GGAAAAATCATTCGTTATAAGGTGTAATTTGGTTGCTTCTGTTGTAGGTT
CTACGGTGGTCGTGTACTGGAAGTCATCCATCATAACAAGTGCGAGGTTA
ATGTTGCCGTGCACGCGTACATCCTTTTGCCCCGACGCTGCAGGCAAAGT
GATGGTGGTTACATCTCTACTCCACTCACTGGAGAATGGCAGGAGACAAC
GGAAGACAGGGATGGTGAAGTACATAATATCCTTCGAGTACAACCATCTT
CCATGTCGAGTGCACCTGATGAAGTTTCTGCCGGCCGGTTATCAAAGATG
TCCTCGACGCCTGATAGGCCAAGCGCCACGTCGTGTTTTCCTGGTTGGCT
GTGGCATGGACTTGTTTCCGAACAGGAATGTAACGAGAGGGGAGTGGCCA
TGAATGAGGGAGCCTCCGGTTTCGGGGAGGCTTCTTTGGTCCATGAGGGA
GGTTGGATGTGGTATGAGCTGCTGAGCAAAAGCGCCGTCTACCCGTAGAG
TTGATGTACATGAAAAGGAGGTAAGACTGTGTGCTTGCATACCTCATGCG
TGCGACAGGCGTTCACCTAGCGCGATGAGGAAAAACGTTTTACTCGTTTT
ATCTCTTCTGTAAGGGTCCTTCGAAGAAAGGCCCCTCTCATGAAGAACAT
ACCCTCACACTGAACGCTTGGTGAATAAGTACACTGTTGGAACAAATACG
GCCACGATTTGTTTCTATTTGATGTGAAGCTTTGATGGAAAAGGGTTTTC
TACCTGGCATTTTGTAAACCTTGAAAAATGTTGGGTGCTTTAACCAGTCG
CAATGGAAATCTTGTCTAGATTCGTGCTCTTTATTTTGCCCCAAATAGTG
TGGTAATTCATCACCATCTTCGAAGATACTGCTACCCTTGAGTGGAGGCG
CACTGACGACAATCATTATCCGGCGTTCTATTAAGTTATTCCGCCCCCTG
ATGTACGTTGCTCTAAAGACTAAAATGGTCACGTTTGGAGTTTATTG
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Coding sequence (CDS) from alignment at H-paniculata_contig28106:2..1698+

>mRNA_H-paniculata_contig28106.7675.1 ID=mRNA_H-paniculata_contig28106.7675.1|Name=mRNA_H-paniculata_contig28106.7675.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=924bp|location=Sequence derived from alignment at H-paniculata_contig28106:2..1698+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACGCGAATGTGAAGGAAACACGATCAACGGATGGGCCTTTAGCGGT
AGTGCTTCGTCGTGTGGCTGGGCTGCTGCAGGAGTTTCGGGCCATGGGGG
TTTTGAGATGGACGCGAATGTGAAGGAAACACGATCAACGGATGGGCCTT
TAGCGGTAGTGCTTCGTCGTGTGGCTGGGCTGCTGCAGGAGTTTCGGGCC
ATGGGGGTTTTGAGGCAAAGTGATGGTGGTTACATCTCTACTCCACTCAC
TGGAGAATGGCAGGAGACAACGGAAGACAGGGATGGTGAAGTACATAATA
TCCTTCGAGTACAACCATCTTCCATGTCGAGTGCACCTGATGAAGTTTCT
GCCGGCCGGTTATCAAAGATGTCCTCGACGCCTGATAGGCCAAGCGCCAC
GTCGTGTTTTCCTGGTTGGCTGTGGCATGGACTTGTTTCCGAACAGGAAT
GTAACGAGAGGGGAGTGGCCATGAATGAGGGAGCCTCCGGTTTCGGGGAG
GCTTCTTTGGTCCATGAGGGAGGTTGGATGTGGTATGAGCTGCTGAGCAA
AAGCGCCGTCTACCCGTAGGCAAAGTGATGGTGGTTACATCTCTACTCCA
CTCACTGGAGAATGGCAGGAGACAACGGAAGACAGGGATGGTGAAGTACA
TAATATCCTTCGAGTACAACCATCTTCCATGTCGAGTGCACCTGATGAAG
TTTCTGCCGGCCGGTTATCAAAGATGTCCTCGACGCCTGATAGGCCAAGC
GCCACGTCGTGTTTTCCTGGTTGGCTGTGGCATGGACTTGTTTCCGAACA
GGAATGTAACGAGAGGGGAGTGGCCATGAATGAGGGAGCCTCCGGTTTCG
GGGAGGCTTCTTTGGTCCATGAGGGAGGTTGGATGTGGTATGAGCTGCTG
AGCAAAAGCGCCGTCTACCCGTAG
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