mRNA_H-paniculata_contig2804.7664.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig2804.7664.1 vs. uniprot
Match: D8LFC8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFC8_ECTSI) HSP 1 Score: 379 bits (974), Expect = 6.260e-122 Identity = 197/385 (51.17%), Postives = 245/385 (63.64%), Query Frame = 1
Query: 340 EYITHLESNCDGGKLAATLSCREVKLYARDTMCYEQDVVRQGHSGPVTQLAFAPRDSCGLFSASQDGTVKGWDTRMSGTSVMCFGQSGEE--IWSMALGFDDHLCATGKGSTVDFYDVRKAGQALGVYTECHTDAVTQVAFHPNKHSFLITGSEDGLMCYLDTAASSEDDALESVLNTECPVRTVGFFGPQGEGIYCCSSTETLSLWHAQGAQRIVDFGDVRSLARGDT---ADCGASTTTSGTSGRRV-----------------KGWGVSVDYMVGCRYEMQTDRLCLVAGGFGGGGCIASISPEG-------------------------------------IAPEGVLEGGHREQIRAFDWRGSTVVTGGEDAKVCLWAAP 1317
EY+T LE +CD +LAA LS EV LY+ +TM V +GH+GP+TQLAFAP D FSAS+DGTV+GWDTR T++ G+SGEE I+SMALG+D LCATGK ++FYD+RKAG+ LG Y+ECHTDAVTQV FHP+K SF++TGSEDGLMC+ DT S E+DAL+SV+N ECPVR+VGFFGP+GEG+YCC++TETLSLWHA GAQRI DFGDVR+LARG+ AD GA + + WGV+VD +V C+Y+ DRL LV + GG C+A++S EG I P+ VLEGGH EQIR F W G + TGGEDA++C W P
Sbjct: 47 EYVTQLEMSCDNKQLAAALSSLEVNLYSVETMALAGKV--KGHTGPLTQLAFAPSDPSSFFSASEDGTVRGWDTRSLATTIT-LGESGEEEEIYSMALGYDGRLCATGKDCLIEFYDLRKAGKPLGSYSECHTDAVTQVRFHPHKRSFMLTGSEDGLMCFFDTEVSLEEDALDSVMNAECPVRSVGFFGPEGEGVYCCTNTETLSLWHAAGAQRIKDFGDVRALARGENLADADVGAGDGATAXXXXXXXXXXXXXXXXXXXXXXGEDWGVAVDCIVDCQYDAAADRLRLVTSSYAGGACLATVSAEGTVSCSGQVTVCAGTGQRQSKGRDRVVIGANSRAEKQGITPDAVLEGGHAEQIRTFQWMGRAMATGGEDARICSWRLP 428
BLAST of mRNA_H-paniculata_contig2804.7664.1 vs. uniprot
Match: A0A835YUF3_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUF3_9STRA) HSP 1 Score: 228 bits (582), Expect = 2.810e-65 Identity = 127/333 (38.14%), Postives = 185/333 (55.56%), Query Frame = 1
Query: 364 NCDGGKLAATLSCREVKLYARDTMCYEQDVVRQGHSGPVTQLAFAPRDSCGLFSASQDGTVKGWDTRMSGT-SVMCF-GQSGEEIWSMALGFDDHLCATGKGSTVDFYDVRKAG------------QALGVYTECHTDAVTQVAFHPNKHSFLITGSEDGLMCYLDTAASSEDDALESVLNTECPVRTVGFFGPQGEGIYCCSSTETLSLWHAQGAQRIVDFGDVRSLARGDTADCGASTTTSGTSGRRVKGWGVSVDYMVGCRYEMQTDRLCLVAGGFGGGGCIASISPEGIAPEGVLEG----GHREQIRAFDWRGSTVVTGGEDAKVCLW 1308
+CDG +LA +++ VK+Y+RD + ++ ++ + P+ L + +F+A +DG V WD R + C Q G E +SMA+GF D LCA G S + FYD+R A + LG Y + HTD VT +AF P S L + SEDGL+C + AA++ + + +VLN ECPVR VGFFGP G++ + +E LSLWHA AQR+ +FG G + RR +G + DY+VGCRY+ D L LVAG FGG +++++P G+A + GH +RAFDW G +++TGGEDA++C W
Sbjct: 4 SCDGCRLATSITNHTVKIYSRDNLDFQTELAC---TKPIVALECSVTHPQLVFAACEDGAVMRWDLRAPPQPQLRCVVAQHGAETYSMAIGFGDALCAVGGASAITFYDLRAAAAPPRAAAGAAAAKPLGAYEDAHTDLVTCLAFRPGAPSQLASASEDGLVCVFEAAAAAGAEPVVAVLNAECPVRRVGFFGPGAAGVWAATGSEGLSLWHAPSAQRVAEFG--------------------GAALRRPRG---AADYLVGCRYDAAADTLALVAGTFGGEVQVSAVTPAGVAAPAAVGAAGARGHAAVVRAFDWAGQSLITGGEDARLCCW 310
BLAST of mRNA_H-paniculata_contig2804.7664.1 vs. uniprot
Match: A0A3R7H5D5_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7H5D5_9STRA) HSP 1 Score: 209 bits (531), Expect = 1.890e-57 Identity = 131/386 (33.94%), Postives = 199/386 (51.55%), Query Frame = 1
Query: 325 EENPYEYITHLESNCDGGKLAATLSCREVKLYARDTMCYEQDVVRQGHSGPVTQLAFAPRDSCGLFSASQDGTVKGWDTRMSGTSVMCFGQSGEEIWSMALGFDDHLCATGKGSTVDFYDVRKAGQALGVYTECHTDAVTQVAFHPNKHSFLITGSEDGLMCYLDTAASSEDDALESVLNTECPVRTVGFFGPQGEGIYCCSSTETLSLWHAQGAQRIVDFGDVRSLARGDTADCGASTTTSGTSGRRVKGWGVSVDYMVGCRYEMQTDRLCLVAGGFGGGGCIASISPEGIAP-----EGVLEGGHREQIRA--FDWRGSTVVTGGEDAKVCLWAAPTASSGAAEISSSYGGAAAVEGAVATGAGVGQSAERRGGNRAGRAFKPY 1461
E+ Y+YI + LA LS R+V+L + DT+ + H+ + ++ +P L + S D VK WDTR + +++ G E+WS+++G + L ATG FYDVR G LG Y E H DA+T+V FHP + +F++T SEDG++C+ D EDDALES+LN E V T+GFFGPQ E I+C + TETL LW+ A+R+ + +R DC ++ + DY++ C Y+ ++ L L+AG G +I + + L+GGH+ IR +D +T+ TGGED ++C WA P +S +AE S Y A++ TG + G +A +A +PY
Sbjct: 36 EDFDYDYILDCQPTAHKSGLALALSNRKVQLRSLDTLGLVHEF--HAHNSTINEVWTSPSSPYQLATCSSDECVKLWDTRAALPAMVV--PVGREVWSLSIGCGETLLATGTNELAMFYDVR-TGNKLGEYGESHIDAITKVRFHPTQPAFVVTASEDGVVCFFDCRIPDEDDALESILNVESAVTTIGFFGPQKENIFCLTGTETLDLWNLWTAERLHHYATIRD-------DCNNNS--------------LPTDYLINCVYDDNSNELFLLAGNHDGDMNAVNIGTDTASAGKLQHAATLKGGHKAAIRCIYYDPETTTLYTGGEDTRLCKWAVPGTASASAEASGGYSSASSSNSRRTTGL------DPAGIRKARKASRPY 389
BLAST of mRNA_H-paniculata_contig2804.7664.1 vs. uniprot
Match: H3GVV6_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GVV6_PHYRM) HSP 1 Score: 207 bits (526), Expect = 7.950e-57 Identity = 121/340 (35.59%), Postives = 180/340 (52.94%), Query Frame = 1
Query: 337 YEYITHLESNCDGGKLAATLSCREVKLYARDTMCYEQDVVRQGHSGPVTQLAFAPRDSCGLFSASQDGTVKGWDTRMSGTSVMCFGQSGEEIWSMALGFDDHLCATGKGSTVDFYDVRKAGQALGVYTECHTDAVTQVAFHPNKHSFLITGSEDGLMCYLDTAASSEDDALESVLNTECPVRTVGFFGPQGEGIYCCSSTETLSLWHAQGAQRIVDFGDVRSLARGDTADCGASTTTSGTSGRRVKGWGVSVDYMVGCRYEMQTDRLCLVAGGFGGGGCIASISPEG-IAPEGVLEGGHREQIRA--FDWRGSTVVTGGEDAKVCLWAAPTASSGAAEIS 1347
Y+Y+ + G LA LS R V+L +R+T+ + H+ + ++ + L + S D VK WDTR + +++ G E+WS+++G + L A G FYDVR G LG Y + H DA+T+V FHP + SF++T SEDG++C D EDDALES+LN E V TVGFFGPQ E I+C + TETL LW+ A+R+ + +R DC + G++ DY++ C Y+ Q D L L+AG G +I +G + L+G H+ +R +D +T+ +GGED ++C W P+A AAE S
Sbjct: 40 YDYVLDCQPTAHGSGLALALSTRTVQLRSRETLALVHEF--HAHNSTIHEIWTSASSPHQLATCSSDECVKLWDTRAALPALVV--PVGREVWSLSIGCGETLLAAGTDELALFYDVR-TGAKLGQYGDSHVDAITKVRFHPTQQSFVVTASEDGVVCVFDCRIPDEDDALESILNVESAVSTVGFFGPQKENIFCLTGTETLDLWNLWTAERLHHYATIRD-------DCNQN--------------GLATDYLIDCVYDDQADELFLLAGNHDGDMNAVTIGTDGKLQHAAALKGAHKACVRCVYYDPETTTLYSGGEDTRLCKWIVPSAVGKAAEAS 353
BLAST of mRNA_H-paniculata_contig2804.7664.1 vs. uniprot
Match: A0A5D6XQS7_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XQS7_9STRA) HSP 1 Score: 204 bits (520), Expect = 4.770e-56 Identity = 124/343 (36.15%), Postives = 174/343 (50.73%), Query Frame = 1
Query: 325 EENPYEYITHLESNCDGGKLAATLSCREVKLYARDTMCYEQDVVRQGHSGPVTQLAFAPRDSCGLFSASQDGTVKGWDTRMSGTSVMCFGQSGEEIWSMALGFDDHLCATGKGSTVDFYDVRKAGQALGVYTECHTDAVTQVAFHPNKHSFLITGSEDGLMCYLDTAASSEDDALESVLNTECPVRTVGFFGPQGEGIYCCSSTETLSLWHAQGAQRIVDFGDVRSLARGDTADCGASTTTSGTSGRRVKGWGVSVDYMVGCRYEMQTDRLCLVAGGFGGGGCIASISPEGIAPE--GVLEGGHREQIRA--FDWRGSTVVTGGEDAKVCLWAAPTASSGAAE 1341
E+ YEY+ + GG LA LS +V+L R+T+ E + H+ + ++ + + + S D VK WD R S G E+WS+++G DD L A G F+D R G+ +G Y E H DAVT+V FHP + F++T SEDG++C D + ED+A ES+L E V +GFFG E I+C + +ETL LW+ AQR+ + VR DC A+ GV DY+V C Y+ QT L L+AG GG + S+ E G L GGH+ +R +D T+ TGGEDA++C W A S GA E
Sbjct: 33 EDYDYEYVLDCKPTAQGGVLAIALSNLKVQLRNRETLALEAEF--HAHNSTINEIWASEAAPWSIATCSSDELVKFWDLRASSQLPTMAIPVGHEVWSLSVGCDDTLLAVGTDVKAHFFDTRTGGK-VGEYGESHVDAVTKVRFHPTQRQFVVTASEDGVVCMFDYRITDEDEAAESILYVESAVTKIGFFGAHMENIFCLTGSETLDLWNLNTAQRLHHYDRVRD-------DCNAN--------------GVPTDYLVDCVYDAQTAELFLLAGTHDGGANVVSVGLSSARLEHVGALMGGHKACVRCAYYDPVARTLFTGGEDARLCKWTAGAVSGGADE 351
BLAST of mRNA_H-paniculata_contig2804.7664.1 vs. uniprot
Match: A0A225WZ64_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WZ64_9STRA) HSP 1 Score: 202 bits (514), Expect = 2.850e-55 Identity = 116/327 (35.47%), Postives = 174/327 (53.21%), Query Frame = 1
Query: 337 YEYITHLESNCDGGKLAATLSCREVKLYARDTMCYEQDVVRQGHSGPVTQLAFAPRDSCGLFSASQDGTVKGWDTRMSGTSVMCFGQSGEEIWSMALGFDDHLCATGKGSTVDFYDVRKAGQALGVYTECHTDAVTQVAFHPNKHSFLITGSEDGLMCYLDTAASSEDDALESVLNTECPVRTVGFFGPQGEGIYCCSSTETLSLWHAQGAQRIVDFGDVRSLARGDTADCGASTTTSGTSGRRVKGWGVSVDYMVGCRYEMQTDRLCLVAGGFGGGGCIASISPEG-IAPEGVLEGGHREQIRA--FDWRGSTVVTGGEDAKVCLW 1308
Y+YI + LA LS +V+L + +T+ + H+ + ++ +P L + S D VK WDTR + +++ G E+WS+A+G + L ATG FYDVR G+ LG Y E H DA+T+V FHP + +F++T SEDG++C+ D EDDALES+LN E V VGFFGPQ E I+C + TETL LW+ A+R+ + +R DC + G+ DY++ C Y+ QT+ L L+AG G S+ G + L+GGH+ +R ++ +T+ TGGED ++C W
Sbjct: 36 YDYILDCQPTAHNSGLALALSTCKVQLRSVETLGLLHEF--HAHNSTINEVWTSPSSPYQLATCSSDECVKLWDTRAALPAMVV--PVGREVWSLAIGCGETLLATGTDELALFYDVR-TGKQLGQYGESHVDAITKVRFHPTQQAFIVTASEDGVVCFFDCRIPDEDDALESILNVESAVSRVGFFGPQNENIFCLTGTETLDLWNIWTAERLHHYNTIRD-------DCNKN--------------GLPTDYLIDCVYDEQTNELFLLAGNHDGDINAVSVGATGNLQHAATLKGGHKACVRCIYYEPESATLFTGGEDTRLCKW 336
BLAST of mRNA_H-paniculata_contig2804.7664.1 vs. uniprot
Match: A0A7S3YAZ1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YAZ1_HETAK) HSP 1 Score: 199 bits (507), Expect = 5.290e-55 Identity = 127/313 (40.58%), Postives = 168/313 (53.67%), Query Frame = 1
Query: 316 DAEEENPYEYITHLESNCDGGK----LAATLSCREVKLYARDTMCYEQDVVRQ--GHSGPVTQLAFAPRDSCGLFSASQDGTVKGWDTRMSGTSVMCFGQSGEEIWSMALGFDDHLCATGKGSTVDFYDVRKAGQALGVYTECHTDAVTQVAFHPNKHSFLITGSEDGLMCYLDTAASSEDDALESVLNTECPVRTVGFFGPQGEGIYCCSSTETLSLWHAQGAQRIVDFGDVRSLARGDTADCGASTTTSGTSGRRVKGWGVSVDYMVGCRYEMQTDRLCLVAGGFGGGGCIASISPEGIAPEGV--LEGGH 1230
D +++ E+ +H C K +AA+ S +KLY+ M D V Q HS +T+++F+ L+SAS D T+KGWDTR +S + F S E+ +ALG+DD+L A G V F+DVR + Q LG YTE H+DAVTQVAF P+K L TGSEDGL+C DT EDDAL +V+N +C +R +GFFG G+YC + TE LSLWH AQ+I D GD R G +G G +DY+V C Y+ D L L AG G + PEG+ P L G H
Sbjct: 21 DTQDDETMEFDSHYVFECILNKNQDLIAASASDNTIKLYSYPDM----DAVGQMEAHSDTITRVSFSQHRPTELYSASHDCTIKGWDTRTL-SSGLTFSTS-YEVHDIALGYDDNLIAAGMPERVQFFDVRSSRQ-LGEYTESHSDAVTQVAFCPDKPGLLATGSEDGLVCVYDTGVPCEDDALVAVMNPDCALRRLGFFGAGSPGLYCLTGTEGLSLWHWGTAQQIADAGDARGAV--------------GAAG------GPRLDYLVDCAYDRAADELSLWAGDNAGALHRLVVGPEGVRPAAAATLRGDH 306
BLAST of mRNA_H-paniculata_contig2804.7664.1 vs. uniprot
Match: A0A0W8D6X8_PHYNI (Replication factor C subunit 2 n=14 Tax=Phytophthora TaxID=4783 RepID=A0A0W8D6X8_PHYNI) HSP 1 Score: 202 bits (513), Expect = 5.890e-55 Identity = 119/351 (33.90%), Postives = 186/351 (52.99%), Query Frame = 1
Query: 325 EENPYEYITHLESNCDGGKLAATLSCREVKLYARDTMCYEQDVVRQGHSGPVTQLAFAPRDSCGLFSASQDGTVKGWDTRMSGTSVMCFGQSGEEIWSMALGFDDHLCATGKGSTVDFYDVRKAGQALGVYTECHTDAVTQVAFHPNKHSFLITGSEDGLMCYLDTAASSEDDALESVLNTECPVRTVGFFGPQGEGIYCCSSTETLSLWHAQGAQRIVDFGDVRSLARGDTADCGASTTTSGTSGRRVKGWGVSVDYMVGCRYEMQTDRLCLVAGGFGGGGCIASISPEGIAP-----EGVLEGGHREQIRA--FDWRGSTVVTGGEDAKVCLWAAPTASSGAAEISSSY 1356
E+ Y+Y+ + + LA LS +++L + +T+ + H+ + ++ +P L + S D VK WDTR + +++ G E+WS+++G + L ATG FYDVR G LG Y E H DA+T+V FHP + +F++T SEDG++C+ D EDDALES++N E V TVGFFGPQ E I+C + TETL LW+ A+R+ + +R DC + G++ DY++ C Y+ Q++ L L+AG G +I + + L+GGH+ +R +D +T+ TGGED ++C W+ P GAAE + Y
Sbjct: 34 EDFDYDYVLDCQPTANKSGLALALSNCKIQLRSLETLGLMHEF--HAHNSTINEVWTSPSSPFQLATCSSDECVKLWDTRTALPAMVL--PVGREVWSLSIGCGETLLATGTDELALFYDVR-TGNKLGQYGESHVDAITKVRFHPTQPAFVVTASEDGVVCFFDCRIPDEDDALESIINVESAVTTVGFFGPQKENIFCLTGTETLDLWNLWTAERLHHYDTIRD-------DCNKN--------------GLATDYLIDCVYDDQSNELFLLAGNHDGDMNAVTIGTDAASAGKLQHAAALKGGHKACVRCIYYDPENTTLYTGGEDTRLCKWSVP----GAAETTDGY 354
BLAST of mRNA_H-paniculata_contig2804.7664.1 vs. uniprot
Match: A0A2D4CEC4_PYTIN (Uncharacterized protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CEC4_PYTIN) HSP 1 Score: 200 bits (509), Expect = 1.880e-54 Identity = 120/336 (35.71%), Postives = 178/336 (52.98%), Query Frame = 1
Query: 325 EENPYEYITHLESNCDGGKLAATLSCREVKLYARDTMCYEQDVVRQGHSGPVTQLAFAPRDSCGLFSASQDGTVKGWDTRMSGTS-VMCFGQSGEEIWSMALGFDDHLCATGKGSTVDFYDVRKAGQALGVYTECHTDAVTQVAFHPNKHSFLITGSEDGLMCYLDTAASSEDDALESVLNTECPVRTVGFFGPQGEGIYCCSSTETLSLWHAQGAQRIVDFGDVRSLARGDTADCGASTTTSGTSGRRVKGWGVSVDYMVGCRYEMQTDRLCLVAGGFGGGGCIASISPEG--IAPEGVLEGGHREQIRA--FDWRGSTVVTGGEDAKVCLWAAP 1317
+E Y+Y+ + G LA LS +V+L R+++ E + + H + ++ + + + S D TVK WD R S V+ FGQ E+WS+++G D L G FYDVR G+ LG Y E H DAVT+V FHP +++T SEDG++C+ D +EDDA+ES+LN E V +GFFGPQ E I+C + TETL LW+ A+RI + +R DC A+ GV DY++ C Y+ + L L+AG G + +I + E + GGH+ IR+ +D +T+ TGGEDA++C W+ P
Sbjct: 31 DEFDYDYVLDCQPTAQRGPLAIALSNFKVQLRNRESLAQEAEFI--AHDSTINEIWTSAVSPWQIATCSSDETVKFWDLRTRNASMVIPFGQ---EVWSLSVGCGDSLLVGGTNXKAHFYDVRM-GKKLGAYGESHIDAVTRVRFHPLNPPYVVTASEDGVVCFFDCRIPNEDDAVESILNVESAVTKIGFFGPQYENIFCLTGTETLDLWNVWTAERIHHYQTLRE-------DCTAN--------------GVPTDYLIDCVYDAASTELFLLAGDHNGSLNVVNIGGGNAQLRHEAAMTGGHKACIRSAYYDAEQATLYTGGEDARLCRWSPP 339
BLAST of mRNA_H-paniculata_contig2804.7664.1 vs. uniprot
Match: G4Z594_PHYSP (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=G4Z594_PHYSP) HSP 1 Score: 199 bits (506), Expect = 7.210e-54 Identity = 116/342 (33.92%), Postives = 182/342 (53.22%), Query Frame = 1
Query: 337 YEYITHLESNCDGGKLAATLSCREVKLYARDTMCYEQDVVRQGHSGPVTQLAFAPRDSCGLFSASQDGTVKGWDTRMSGTSVMCFGQSGEEIWSMALGFDDHLCATGKGSTVDFYDVRKAGQALGVYTECHTDAVTQVAFHPNKHSFLITGSEDGLMCYLDTAASSEDDALESVLNTECPVRTVGFFGPQGEGIYCCSSTETLSLWHAQGAQRIVDFGDVRSLARGDTADCGASTTTSGTSGRRVKGWGVSVDYMVGCRYEMQTDRLCLVAGGFGGGGCIASISPEGIAPEGV-----LEGGHREQIRA--FDWRGSTVVTGGEDAKVCLWAAPTASSGAAE 1341
Y+Y+ + LA LS +++L +R+T+ + H+ + ++ +P L + S D VK WDTR + +++ G E+WS+++G + L A G FYDVR Q LG Y E H DA+T+V FHP + +F++T SEDG++C+ D EDDALES+LN E + +GFFGPQ E I+C + TETL LW+ AQR+ + +R DC A+ G+ DY++ C Y+ Q++ L L+AG G +I + + + L+GGH+ +R +D +T+ +GGEDA++C W P AS+ A +
Sbjct: 42 YDYVLDCQPTAQRSGLALALSTYKLQLRSRETLALVHEF--HAHNSTIHEVWTSPSSPHQLATCSSDECVKLWDTRAALPAMVV--PVGREVWSLSVGCGETLLAAGTDELALFYDVRTGAQ-LGQYGESHVDAITKVRFHPTQPAFVVTASEDGVVCFFDCRIPDEDDALESILNVESAITNIGFFGPQKENIFCLTGTETLDLWNLWTAQRLHHYATIRD-------DCNAN--------------GLPTDYLIDCLYDDQSNELFLLAGNHDGDMNAVNIGTDQASAGKLQHAAPLKGGHKACVRCVYYDPDSATLYSGGEDARLCRWTVPGASAEAGD 357 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2804.7664.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2804.7664.1 >prot_H-paniculata_contig2804.7664.1 ID=prot_H-paniculata_contig2804.7664.1|Name=mRNA_H-paniculata_contig2804.7664.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=459bp MEVDMPEEEKECPASSVLPPSTASELARFSLTKSIVTAIGRSTHGSSSPAback to top mRNA from alignment at H-paniculata_contig2804:858..5553- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2804.7664.1 ID=mRNA_H-paniculata_contig2804.7664.1|Name=mRNA_H-paniculata_contig2804.7664.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4696bp|location=Sequence derived from alignment at H-paniculata_contig2804:858..5553- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2804:858..5553- >mRNA_H-paniculata_contig2804.7664.1 ID=mRNA_H-paniculata_contig2804.7664.1|Name=mRNA_H-paniculata_contig2804.7664.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2754bp|location=Sequence derived from alignment at H-paniculata_contig2804:858..5553- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |