mRNA_H-paniculata_contig28033.7663.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig28033.7663.1 vs. uniprot
Match: A0A2S2NPY8_SCHGA (Copia protein (Fragment) n=1 Tax=Schizaphis graminum TaxID=13262 RepID=A0A2S2NPY8_SCHGA) HSP 1 Score: 175 bits (444), Expect = 2.350e-47 Identity = 107/286 (37.41%), Postives = 156/286 (54.55%), Query Frame = 1
Query: 1 VSDEKPKSAAEALKSPETEKWRAAMEEEWRTLVKNRTWESEDPGRSLMGRKAISTKWNFKRKLKEDGSVPRYKARLVAQDFSQVEGENFFETSAPVARMSTLRT--VFSLKKSCLL--------------------SYPSRFSLSPETFVRRLHKSLYGLKQSGRNWNNILDDFLVGIGLQRSTTDPCLYFSRDEGIETDILVAVYVDDLVIARRR-ERVDEFKYNISRHFTMKDLGSLSRVLGIEVQCDLPNGTRTISQGGYIREVLKRYGFDECRGVPTPVEGK 789
+ D P + EA P ++W AM+ E +L KN+TW + R ISTKW FK K +G + +YKARLVA+ FSQ EG ++ ET +PVA+++T R+ VF+++K+ L P FS + V RLHK+LYGLKQ+ + WNN FL IG RS TD CLY G E I + +YVDD+++A R++E KY + F ++D G LS LGI+++ ++ ISQG Y++ VL+R+ +C+ P+E K
Sbjct: 58 IIDNVPTTYDEAQSHPNKKEWNLAMKSEIESLYKNKTWTLV---KKPQNRNIISTKWIFKIKKDGEGQITKYKARLVARGFSQQEGMDYTETYSPVAKLTTFRSLLVFAVQKNWYLYQLDVKTAFLHGVVNEEIYIEQPCGFSEN-NNLVCRLHKALYGLKQASKCWNNRFHQFLTKIGFTRSNTDHCLYTLDFSGSEDLIHLLLYVDDIILASGSINRINELKYQLKEEFEIEDCGILSYYLGIKIEHNIDKAELKISQGQYLKNVLRRFNMLDCKPRSIPIETK 339
BLAST of mRNA_H-paniculata_contig28033.7663.1 vs. uniprot
Match: A0A8D9B1F5_9HEMI (Copia protein n=1 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D9B1F5_9HEMI) HSP 1 Score: 172 bits (436), Expect = 1.830e-46 Identity = 101/271 (37.27%), Postives = 149/271 (54.98%), Query Frame = 1
Query: 43 SPETEKWRAAMEEEWRTLVKNRTWE-SEDPGRSLMGRKAISTKWNFKRKLKEDGSVPRYKARLVAQDFSQVEGENFFETSAPVARMSTLRTVFS----------------------LKKSCLLSYPSRFSLSPETFVRRLHKSLYGLKQSGRNWNNILDDFLVGIGLQRSTTDPCLYFSRDEGIETDILVAVYVDDLVIA-RRRERVDEFKYNISRHFTMKDLGSLSRVLGIEVQCDLPNGTRTISQGGYIREVLKRYGFDECRGVPTPVE 783
SPE + W AMEEE L +NRTW +E+PG + I KW F++K +G++ ++KARLVA+ F Q G ++ E APVA++ST+RTV + L++ + P ++ V +L+KSLYGLKQS R WN +DF+V G +RS D CLY +EG+ V +YVDDL++ ++ K + + F M D G L LGIE++ D GT ++SQ YI ++L R+ +C+GV TP+E
Sbjct: 30 SPERDNWIKAMEEEMSALHENRTWNLTENPG----NKNVIKCKWVFQKKFNSEGNIEKFKARLVAKGFQQRRGIDYDEIFAPVAKLSTIRTVLAIANHKDLFLHQMDVKTAFLNGVLEEEIYMYQPEGYNSVNSGMVCKLNKSLYGLKQSPRCWNKRFNDFMVTSGFERSKNDYCLYSRFEEGLT--FYVILYVDDLILCCNDLNKIQNMKNRLCKEFKMTDFGKLKFFLGIEIERDEEKGTLSMSQKQYILKLLDRFQMTDCKGVNTPME 294
BLAST of mRNA_H-paniculata_contig28033.7663.1 vs. uniprot
Match: A0A7D9JFU5_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9JFU5_PARCT) HSP 1 Score: 171 bits (433), Expect = 5.120e-46 Identity = 106/286 (37.06%), Postives = 154/286 (53.85%), Query Frame = 1
Query: 7 DEKPKSAAEALKSPETEKWRAAMEEEWRTLVKNRTWESEDPGRSLMGRKAISTKWNFKRKLKEDGSVPRYKARLVAQDFSQVEGENFFETSAPVARMSTLRTVFSL-------------KKSCLLSYPSR--FSLSPETFVRRLH--------KSLYGLKQSGRNWNNILDDFLVGIGLQRSTTDPCLY---FSRDEGIETDILVAVYVDDLV-IARRRERVDEFKYNISRHFTMKDLGSLSRVLGIEVQCDLPNGTRTISQGGYIREVLKRYGFDECRGVPTPVE 783
+E+P+S +EAL KW+ A++EE+ +L+ N TWE P G I +KW K K DG+V R+KARLVAQ +SQ G N+ E +PVAR S++RT+ +L K + L Y + P+ FV + H KSLYGLKQS R WN LD FL G ++S D C+Y D G + +++AVYVDD++ I+ ++ K + +HF M D G + +LG+ ++ D T ISQ Y+ VL R+G C+ + TP+E
Sbjct: 11 NEEPQSISEALNGANASKWKQALKEEYNSLISNETWELVPPPE---GCNVIGSKWVMKIKRDADGNVDRHKARLVAQGYSQTPGINYEEVFSPVARHSSIRTLLALANKHNLEIHQMDVKTAFLNGYIEHDIYMSQPDGFVDQEHPEYVCKLKKSLYGLKQSARCWNQTLDSFLTKNGYRKSNADNCIYVKSIKNDNGFISFVILAVYVDDIIPISNDINMLNTEKDLLCKHFEMTDQGEIHFILGMTIKRDRETKTLFISQQRYLESVLDRFGMANCKPISTPLE 293
BLAST of mRNA_H-paniculata_contig28033.7663.1 vs. uniprot
Match: A0A0C9RAA9_9HYME (POLX_4 protein (Fragment) n=1 Tax=Fopius arisanus TaxID=64838 RepID=A0A0C9RAA9_9HYME) HSP 1 Score: 173 bits (439), Expect = 8.260e-46 Identity = 112/297 (37.71%), Postives = 162/297 (54.55%), Query Frame = 1
Query: 16 PKSAAEALKSPETEKWRAAMEEEWRTLVKNRTWESEDPGRSLMGRKAISTKWNFKRKLKEDGSVPRYKARLVAQDFSQVEGENFFETSAPVARMSTLRTVFSLKKSCLLSYPSR---------------FSLSPETF------VRRLHKSLYGLKQSGRNWNNILDDFLVGIGLQRSTTDPCLYFSRDEGIETDILVAVYVDD-LVIARRRERVDEFKYNISRHFTMKDLGSLSRVLGIEVQCDLPNGTRTISQGGYIREVLKRYGFDECRGVPTPVEGKGKI---LAPESADKSPE 831
P + EAL SPE + W+ AM+EE + NRTW + G++AI+TKW FK K +G++ RYKARLV + SQ +G ++ ET +PV R ++LR +F++ LS F PE + V RL KSLYGLKQ+ + WN+ L++ L+ +GL RS D C+YF E + + VA+YVDD LV + ++ K +S MKD+GS S VLG+ VQ D + Q YI VLKR+G D+C V TP++ K+ + P+S ++ E
Sbjct: 233 PVNLEEALNSPEADDWKRAMKEEIESHKTNRTWVLT---KLPEGKRAINTKWVFKTKRNAEGALVRYKARLVVKGCSQKQGVDYSETFSPVVRYNSLRFLFAMAAKHDLSVHQLDAVTAFLNGELQEEVFMKQPEGYSDNSGRVCRLLKSLYGLKQASKVWNDKLNEVLISLGLIRSEVDQCIYFCVSE--YSMVYVAIYVDDVLVFSNDKKATQRIKNELSSKIKMKDMGSASSVLGMRVQRDEVKKLIKLDQSEYISSVLKRFGMDDCNAVATPLDLSQKLTLDMCPKSEEEKKE 524
BLAST of mRNA_H-paniculata_contig28033.7663.1 vs. uniprot
Match: A0A7D9HZ03_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HZ03_PARCT) HSP 1 Score: 172 bits (436), Expect = 9.950e-46 Identity = 100/287 (34.84%), Postives = 161/287 (56.10%), Query Frame = 1
Query: 16 PKSAAEALKSPETEKWRAAMEEEWRTLVKNRTWESEDPGRSLMGRKAISTKWNFKRKLKEDGSVPRYKARLVAQDFSQVEGENFFETSAPVARMSTLRTVFSL----------------------KKSCLLSYPSRFSLS-PETFVRRLHKSLYGLKQSGRNWNNILDDFLVGIGLQRSTTDPCLYFSRDEGIETDILVAVYVDDLVIARRR-ERVDEFKYNISRHFTMKDLGSLSRVLGIEVQCDLPNGTRTISQGGYIREVLKRYGFDECRGVPTPVEGKGKILA 804
P + +EAL P E+W AM++E +L ++ WE + + RKA+ KW FK K DGS+ R+KARLVAQ FSQ G ++ ET +PV R ++RTV +L + + P F + E +L+KSLYGLKQS R WN++LD+ L IG ++ +DPC+Y ++G +VA++VDD+++A + E++ + K +I+ F +KD+G L +LG++V + + I Q Y ++K+YG + C+ V TPV+ K+++
Sbjct: 146 PTTVSEALCGPNAERWHEAMQQEMDSLQEHDVWELTELPKD---RKAVGCKWVFKVKHNADGSIERHKARLVAQGFSQRFGVDYDETFSPVVRFESIRTVIALSVQRGLKLHQMDVTAAFLNGELEDEVYMKQPEGFEVKGKEHLACKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDG--NIFVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVS 425
BLAST of mRNA_H-paniculata_contig28033.7663.1 vs. uniprot
Match: A0A0A9WI29_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9WI29_LYGHE) HSP 1 Score: 167 bits (423), Expect = 1.100e-45 Identity = 110/301 (36.54%), Postives = 170/301 (56.48%), Query Frame = 1
Query: 16 PKSAAEALKSPETEKWRAAMEEEWRTLVKNRTWESED--PGRSLMGRKAISTKWNFKRKLKEDGSVPRYKARLVAQDFSQVEGENFFETSAPVARMSTLRTVFSL----------------------KKSCLLSYPSRFSLSPETFVRRLHKSLYGLKQSGRNWNNILDDFLVGIGLQRSTTDPCLYFSR-DEGIETDILVAVYVDDLV-IARRRERVDEFKYNISRHFTMKDLGSLSRVLGIEVQCDLPNGTRTISQGGYIREVLKRYGFDECRGVPTPVEGK---GKILAPESADKSPE 831
PK+ +A++ PE++ W+AAMEEE +L + WE + PG++ AI +KW FK K DG+V RYKARLVAQ F+Q G ++ ET +PV + +R +F L K+ + P + E V RL +SLYGLKQSGR+W LD+ L+ G+ + ++PC+Y+ R +E ++ ++ VYVDDL+ I+ E + E K + R+F MKDLG L+ +LGIEV+ + + ++Q YI+E+L + +C+ V TP+E GK P+S ++ E
Sbjct: 26 PKTFKQAMEGPESDLWKAAMEEELTSLEVMKVWEFTELPPGKT-----AIGSKWVFKIKYMADGTVERYKARLVAQGFTQKPGVDYEETYSPVISLPAIRLLFKLAVNNNWIIHQMDVKTAYLNGELKEEIYMKCPDGIT-GAEGKVCRLLRSLYGLKQSGRSWYEKLDEKLLEGGMNKCKSEPCIYYRRCNENVK---IILVYVDDLILISSSEECMVEMKEMLRRNFDMKDLGELNYILGIEVKKG--DHSLRLNQVKYIKEILSEFNMSDCKSVSTPMETNYNIGKQHCPKSDEERKE 315
BLAST of mRNA_H-paniculata_contig28033.7663.1 vs. uniprot
Match: A0A034WM55_BACDO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Bactrocera dorsalis TaxID=27457 RepID=A0A034WM55_BACDO) HSP 1 Score: 173 bits (438), Expect = 2.070e-45 Identity = 114/287 (39.72%), Postives = 161/287 (56.10%), Query Frame = 1
Query: 16 PKSAAEALKSPETEKWRAAMEEEWRTLVKNRTWE-SEDPGRSLMGRKAISTKWNFKRKLKEDGSVPRYKARLVAQDFSQVEGENFFETSAPVARMSTLR-----------TVFS-----------LKKSCLLSYPSRFSLSPETFVRRLHKSLYGLKQSGRNWNNILDDFLVGIGLQRSTTDPCLYFSRDEGIETDILVAVYVDDLVI-ARRRERVDEFKYNISRHFTMKDLGSLSRVLGIEVQCDLPNGTRTISQGGYIREVLKRYGFDECRGVPTPVEGKGKILA 804
P + EA+ S + W++AM EE + N TWE S P MG+KAI +KW FKRK+ DG RYKARLV + F+Q + ++ ET APV R +++R TV+ LK+ ++ PS F V +L KSLYGLKQS R WN L+ LV GLQRS D C+YF + + + VAVYVDD+++ A + +++ K +S F MKDLG+ S VLG+ + +L GT I Q YI +V++R+G +EC V TP++ K+ A
Sbjct: 342 PNTVEEAMASEHHKLWQSAMIEEIESHDINGTWELSALP----MGKKAIPSKWVFKRKVNADGDPVRYKARLVVKGFNQKQHIDYDETFAPVVRYTSIRFLLALAVKYNLTVYQMDAVSAFLHGELKEEIYMTQPSGFD-DGSGRVCKLRKSLYGLKQSSRVWNIKLNSTLVSFGLQRSNVDQCVYFLVAD--KKMLFVAVYVDDVILFANDTKLLNKLKDKLSETFKMKDLGAASSVLGMRIAQNLKEGTLKIDQSAYIADVIRRFGMEECNPVGTPLDVNQKLSA 621
BLAST of mRNA_H-paniculata_contig28033.7663.1 vs. uniprot
Match: A0A034VP70_BACDO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Bactrocera dorsalis TaxID=27457 RepID=A0A034VP70_BACDO) HSP 1 Score: 173 bits (439), Expect = 2.250e-45 Identity = 112/297 (37.71%), Postives = 162/297 (54.55%), Query Frame = 1
Query: 16 PKSAAEALKSPETEKWRAAMEEEWRTLVKNRTWESEDPGRSLMGRKAISTKWNFKRKLKEDGSVPRYKARLVAQDFSQVEGENFFETSAPVARMSTLRTVFSLKKSCLLSYPSR---------------FSLSPETF------VRRLHKSLYGLKQSGRNWNNILDDFLVGIGLQRSTTDPCLYFSRDEGIETDILVAVYVDD-LVIARRRERVDEFKYNISRHFTMKDLGSLSRVLGIEVQCDLPNGTRTISQGGYIREVLKRYGFDECRGVPTPVEGKGKI---LAPESADKSPE 831
P + EAL SPE + W+ AM+EE + NRTW + G++AI+TKW FK K +G++ RYKARLV + SQ +G ++ ET +PV R ++LR +F++ LS F PE + V RL KSLYGLKQ+ + WN+ L++ L+ +GL RS D C+YF E + + VA+YVDD LV + ++ K +S MKD+GS S VLG+ VQ D + Q YI VLKR+G D+C V TP++ K+ + P+S ++ E
Sbjct: 752 PVNLEEALNSPEADDWKRAMKEEIESHKTNRTWVLT---KLPEGKRAINTKWVFKTKRNAEGALVRYKARLVVKGCSQKQGVDYSETFSPVVRYNSLRFLFAMAAKHDLSVHQLDAVTAFLNGELQEEVFMKQPEGYSDNSGRVCRLLKSLYGLKQASKVWNDKLNEVLISLGLIRSEVDQCIYFCVSE--YSMVYVAIYVDDVLVFSNDKKATQRIKNELSSKIKMKDMGSASSVLGMRVQRDEVKKLIKLDQSEYISSVLKRFGMDDCNAVATPLDLSQKLTLDMCPKSEEEKKE 1043
BLAST of mRNA_H-paniculata_contig28033.7663.1 vs. uniprot
Match: A0A182GR37_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GR37_AEDAL) HSP 1 Score: 166 bits (419), Expect = 3.120e-45 Identity = 103/268 (38.43%), Postives = 147/268 (54.85%), Query Frame = 1
Query: 61 WRAAMEEEWRTLVKNRTWESEDPGRSLMGRKAISTKWNFKRKLKEDGSVPRYKARLVAQDFSQVEGENFFETSAPVARMSTLRTVFSLK------------KSCLLS---YPSRFSLSPETF------VRRLHKSLYGLKQSGRNWNNILDDFLVGIGLQRSTTDPCLYFSRDEGIETDILVAVYVDDLVIARRRER-VDEFKYNISRHFTMKDLGSLSRVLGIEVQCDLPNGTRTISQGGYIREVLKRYGFDECRGVPTPVEGKGKI 798
W+ AM+EE +LV N W + GR A++ KW FK K ED PRYKARLVA+ F+Q +G ++ +T +P+ARM TLRTV +L K L+ + L PE F V RL +SLYGLKQ+ R+WN +F+V +G RS D CLY R G +T +++ +YVDD++IA E+ V K +S F M D+G + LG+ + D T ISQ Y+ +L R+ +CR + TP+E + K+
Sbjct: 110 WKQAMQEEMDSLVSNEKWTLV---KLPEGRNAVTCKWIFKLKHSEDNEAPRYKARLVARGFTQKQGFDYSDTYSPLARMDTLRTVLALANQRGWSVHQMDVKCAFLNGELTEEIYMLQPEGFEQRDGLVCRLKRSLYGLKQAARSWNERFHNFVVRLGFVRSRNDLCLY-RRGSG-DTQVILVIYVDDVLIASGSEKLVGTIKKCLSTEFEMTDVGEVRNFLGMRIDRDAEKKTLRISQRRYLENLLDRFQMRDCRPIATPMENRLKL 372
BLAST of mRNA_H-paniculata_contig28033.7663.1 vs. uniprot
Match: A0A6S7HEL0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HEL0_PARCT) HSP 1 Score: 173 bits (438), Expect = 3.160e-45 Identity = 103/288 (35.76%), Postives = 163/288 (56.60%), Query Frame = 1
Query: 16 PKSAAEALKSPETEKWRAAMEEEWRTLVKNRTWESEDPGRSLMGRKAISTKWNFKRKLKEDGSVPRYKARLVAQDFSQVEGENFFETSAPVARMSTLRTVFSL----------------------KKSCLLSYPSRFSLS-PETFVRRLHKSLYGLKQSGRNWNNILDDFLVGIGLQRSTTDPCLYFSRDEGIETDI-LVAVYVDDLVIARRR-ERVDEFKYNISRHFTMKDLGSLSRVLGIEVQCDLPNGTRTISQGGYIREVLKRYGFDECRGVPTPVEGKGKILA 804
P + +EAL P E+W AM++E +L ++ WE + + RKA+ KW FK K DGS+ R+KARLVAQ FSQ G ++ ET +PV R +RTV +L + + P F + E V +L+KSLYGLKQS R WN++LD+ L IG ++ +DPC+Y ++G DI +VA++VDD+++A + E++ + K +I+ F +KD+G L +LG++V + + I Q Y ++K+YG + C+ V TPV+ K+++
Sbjct: 760 PTTVSEALCGPNAERWHEAMQQEMDSLQEHDVWELTELPKD---RKAVGCKWVFKVKHNADGSIERHKARLVAQGFSQRFGVDYDETFSPVVRFEKIRTVIALSVQRGLKLHQMDVTAAFLNGELEDEVYMKQPEGFEVKGKEHLVCKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDG---DIFVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVS 1039 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28033.7663.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig28033.7663.1 >prot_H-paniculata_contig28033.7663.1 ID=prot_H-paniculata_contig28033.7663.1|Name=mRNA_H-paniculata_contig28033.7663.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=277bp VSDEKPKSAAEALKSPETEKWRAAMEEEWRTLVKNRTWESEDPGRSLMGRback to top mRNA from alignment at H-paniculata_contig28033:726..1644+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig28033.7663.1 ID=mRNA_H-paniculata_contig28033.7663.1|Name=mRNA_H-paniculata_contig28033.7663.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=919bp|location=Sequence derived from alignment at H-paniculata_contig28033:726..1644+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig28033:726..1644+ >mRNA_H-paniculata_contig28033.7663.1 ID=mRNA_H-paniculata_contig28033.7663.1|Name=mRNA_H-paniculata_contig28033.7663.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1662bp|location=Sequence derived from alignment at H-paniculata_contig28033:726..1644+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |