mRNA_H-paniculata_contig28033.7663.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28033.7663.1
Unique NamemRNA_H-paniculata_contig28033.7663.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig28033.7663.1 vs. uniprot
Match: A0A2S2NPY8_SCHGA (Copia protein (Fragment) n=1 Tax=Schizaphis graminum TaxID=13262 RepID=A0A2S2NPY8_SCHGA)

HSP 1 Score: 175 bits (444), Expect = 2.350e-47
Identity = 107/286 (37.41%), Postives = 156/286 (54.55%), Query Frame = 1
Query:    1 VSDEKPKSAAEALKSPETEKWRAAMEEEWRTLVKNRTWESEDPGRSLMGRKAISTKWNFKRKLKEDGSVPRYKARLVAQDFSQVEGENFFETSAPVARMSTLRT--VFSLKKSCLL--------------------SYPSRFSLSPETFVRRLHKSLYGLKQSGRNWNNILDDFLVGIGLQRSTTDPCLYFSRDEGIETDILVAVYVDDLVIARRR-ERVDEFKYNISRHFTMKDLGSLSRVLGIEVQCDLPNGTRTISQGGYIREVLKRYGFDECRGVPTPVEGK 789
            + D  P +  EA   P  ++W  AM+ E  +L KN+TW      +    R  ISTKW FK K   +G + +YKARLVA+ FSQ EG ++ ET +PVA+++T R+  VF+++K+  L                      P  FS +    V RLHK+LYGLKQ+ + WNN    FL  IG  RS TD CLY     G E  I + +YVDD+++A     R++E KY +   F ++D G LS  LGI+++ ++      ISQG Y++ VL+R+   +C+    P+E K
Sbjct:   58 IIDNVPTTYDEAQSHPNKKEWNLAMKSEIESLYKNKTWTLV---KKPQNRNIISTKWIFKIKKDGEGQITKYKARLVARGFSQQEGMDYTETYSPVAKLTTFRSLLVFAVQKNWYLYQLDVKTAFLHGVVNEEIYIEQPCGFSEN-NNLVCRLHKALYGLKQASKCWNNRFHQFLTKIGFTRSNTDHCLYTLDFSGSEDLIHLLLYVDDIILASGSINRINELKYQLKEEFEIEDCGILSYYLGIKIEHNIDKAELKISQGQYLKNVLRRFNMLDCKPRSIPIETK 339          
BLAST of mRNA_H-paniculata_contig28033.7663.1 vs. uniprot
Match: A0A8D9B1F5_9HEMI (Copia protein n=1 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D9B1F5_9HEMI)

HSP 1 Score: 172 bits (436), Expect = 1.830e-46
Identity = 101/271 (37.27%), Postives = 149/271 (54.98%), Query Frame = 1
Query:   43 SPETEKWRAAMEEEWRTLVKNRTWE-SEDPGRSLMGRKAISTKWNFKRKLKEDGSVPRYKARLVAQDFSQVEGENFFETSAPVARMSTLRTVFS----------------------LKKSCLLSYPSRFSLSPETFVRRLHKSLYGLKQSGRNWNNILDDFLVGIGLQRSTTDPCLYFSRDEGIETDILVAVYVDDLVIA-RRRERVDEFKYNISRHFTMKDLGSLSRVLGIEVQCDLPNGTRTISQGGYIREVLKRYGFDECRGVPTPVE 783
            SPE + W  AMEEE   L +NRTW  +E+PG     +  I  KW F++K   +G++ ++KARLVA+ F Q  G ++ E  APVA++ST+RTV +                      L++   +  P  ++      V +L+KSLYGLKQS R WN   +DF+V  G +RS  D CLY   +EG+     V +YVDDL++      ++   K  + + F M D G L   LGIE++ D   GT ++SQ  YI ++L R+   +C+GV TP+E
Sbjct:   30 SPERDNWIKAMEEEMSALHENRTWNLTENPG----NKNVIKCKWVFQKKFNSEGNIEKFKARLVAKGFQQRRGIDYDEIFAPVAKLSTIRTVLAIANHKDLFLHQMDVKTAFLNGVLEEEIYMYQPEGYNSVNSGMVCKLNKSLYGLKQSPRCWNKRFNDFMVTSGFERSKNDYCLYSRFEEGLT--FYVILYVDDLILCCNDLNKIQNMKNRLCKEFKMTDFGKLKFFLGIEIERDEEKGTLSMSQKQYILKLLDRFQMTDCKGVNTPME 294          
BLAST of mRNA_H-paniculata_contig28033.7663.1 vs. uniprot
Match: A0A7D9JFU5_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9JFU5_PARCT)

HSP 1 Score: 171 bits (433), Expect = 5.120e-46
Identity = 106/286 (37.06%), Postives = 154/286 (53.85%), Query Frame = 1
Query:    7 DEKPKSAAEALKSPETEKWRAAMEEEWRTLVKNRTWESEDPGRSLMGRKAISTKWNFKRKLKEDGSVPRYKARLVAQDFSQVEGENFFETSAPVARMSTLRTVFSL-------------KKSCLLSYPSR--FSLSPETFVRRLH--------KSLYGLKQSGRNWNNILDDFLVGIGLQRSTTDPCLY---FSRDEGIETDILVAVYVDDLV-IARRRERVDEFKYNISRHFTMKDLGSLSRVLGIEVQCDLPNGTRTISQGGYIREVLKRYGFDECRGVPTPVE 783
            +E+P+S +EAL      KW+ A++EE+ +L+ N TWE   P     G   I +KW  K K   DG+V R+KARLVAQ +SQ  G N+ E  +PVAR S++RT+ +L             K + L  Y     +   P+ FV + H        KSLYGLKQS R WN  LD FL   G ++S  D C+Y      D G  + +++AVYVDD++ I+     ++  K  + +HF M D G +  +LG+ ++ D    T  ISQ  Y+  VL R+G   C+ + TP+E
Sbjct:   11 NEEPQSISEALNGANASKWKQALKEEYNSLISNETWELVPPPE---GCNVIGSKWVMKIKRDADGNVDRHKARLVAQGYSQTPGINYEEVFSPVARHSSIRTLLALANKHNLEIHQMDVKTAFLNGYIEHDIYMSQPDGFVDQEHPEYVCKLKKSLYGLKQSARCWNQTLDSFLTKNGYRKSNADNCIYVKSIKNDNGFISFVILAVYVDDIIPISNDINMLNTEKDLLCKHFEMTDQGEIHFILGMTIKRDRETKTLFISQQRYLESVLDRFGMANCKPISTPLE 293          
BLAST of mRNA_H-paniculata_contig28033.7663.1 vs. uniprot
Match: A0A0C9RAA9_9HYME (POLX_4 protein (Fragment) n=1 Tax=Fopius arisanus TaxID=64838 RepID=A0A0C9RAA9_9HYME)

HSP 1 Score: 173 bits (439), Expect = 8.260e-46
Identity = 112/297 (37.71%), Postives = 162/297 (54.55%), Query Frame = 1
Query:   16 PKSAAEALKSPETEKWRAAMEEEWRTLVKNRTWESEDPGRSLMGRKAISTKWNFKRKLKEDGSVPRYKARLVAQDFSQVEGENFFETSAPVARMSTLRTVFSLKKSCLLSYPSR---------------FSLSPETF------VRRLHKSLYGLKQSGRNWNNILDDFLVGIGLQRSTTDPCLYFSRDEGIETDILVAVYVDD-LVIARRRERVDEFKYNISRHFTMKDLGSLSRVLGIEVQCDLPNGTRTISQGGYIREVLKRYGFDECRGVPTPVEGKGKI---LAPESADKSPE 831
            P +  EAL SPE + W+ AM+EE  +   NRTW      +   G++AI+TKW FK K   +G++ RYKARLV +  SQ +G ++ ET +PV R ++LR +F++     LS                   F   PE +      V RL KSLYGLKQ+ + WN+ L++ L+ +GL RS  D C+YF   E   + + VA+YVDD LV +  ++     K  +S    MKD+GS S VLG+ VQ D       + Q  YI  VLKR+G D+C  V TP++   K+   + P+S ++  E
Sbjct:  233 PVNLEEALNSPEADDWKRAMKEEIESHKTNRTWVLT---KLPEGKRAINTKWVFKTKRNAEGALVRYKARLVVKGCSQKQGVDYSETFSPVVRYNSLRFLFAMAAKHDLSVHQLDAVTAFLNGELQEEVFMKQPEGYSDNSGRVCRLLKSLYGLKQASKVWNDKLNEVLISLGLIRSEVDQCIYFCVSE--YSMVYVAIYVDDVLVFSNDKKATQRIKNELSSKIKMKDMGSASSVLGMRVQRDEVKKLIKLDQSEYISSVLKRFGMDDCNAVATPLDLSQKLTLDMCPKSEEEKKE 524          
BLAST of mRNA_H-paniculata_contig28033.7663.1 vs. uniprot
Match: A0A7D9HZ03_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HZ03_PARCT)

HSP 1 Score: 172 bits (436), Expect = 9.950e-46
Identity = 100/287 (34.84%), Postives = 161/287 (56.10%), Query Frame = 1
Query:   16 PKSAAEALKSPETEKWRAAMEEEWRTLVKNRTWESEDPGRSLMGRKAISTKWNFKRKLKEDGSVPRYKARLVAQDFSQVEGENFFETSAPVARMSTLRTVFSL----------------------KKSCLLSYPSRFSLS-PETFVRRLHKSLYGLKQSGRNWNNILDDFLVGIGLQRSTTDPCLYFSRDEGIETDILVAVYVDDLVIARRR-ERVDEFKYNISRHFTMKDLGSLSRVLGIEVQCDLPNGTRTISQGGYIREVLKRYGFDECRGVPTPVEGKGKILA 804
            P + +EAL  P  E+W  AM++E  +L ++  WE  +  +    RKA+  KW FK K   DGS+ R+KARLVAQ FSQ  G ++ ET +PV R  ++RTV +L                      +    +  P  F +   E    +L+KSLYGLKQS R WN++LD+ L  IG  ++ +DPC+Y   ++G     +VA++VDD+++A +  E++ + K +I+  F +KD+G L  +LG++V  +  +    I Q  Y   ++K+YG + C+ V TPV+   K+++
Sbjct:  146 PTTVSEALCGPNAERWHEAMQQEMDSLQEHDVWELTELPKD---RKAVGCKWVFKVKHNADGSIERHKARLVAQGFSQRFGVDYDETFSPVVRFESIRTVIALSVQRGLKLHQMDVTAAFLNGELEDEVYMKQPEGFEVKGKEHLACKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDG--NIFVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVS 425          
BLAST of mRNA_H-paniculata_contig28033.7663.1 vs. uniprot
Match: A0A0A9WI29_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9WI29_LYGHE)

HSP 1 Score: 167 bits (423), Expect = 1.100e-45
Identity = 110/301 (36.54%), Postives = 170/301 (56.48%), Query Frame = 1
Query:   16 PKSAAEALKSPETEKWRAAMEEEWRTLVKNRTWESED--PGRSLMGRKAISTKWNFKRKLKEDGSVPRYKARLVAQDFSQVEGENFFETSAPVARMSTLRTVFSL----------------------KKSCLLSYPSRFSLSPETFVRRLHKSLYGLKQSGRNWNNILDDFLVGIGLQRSTTDPCLYFSR-DEGIETDILVAVYVDDLV-IARRRERVDEFKYNISRHFTMKDLGSLSRVLGIEVQCDLPNGTRTISQGGYIREVLKRYGFDECRGVPTPVEGK---GKILAPESADKSPE 831
            PK+  +A++ PE++ W+AAMEEE  +L   + WE  +  PG++     AI +KW FK K   DG+V RYKARLVAQ F+Q  G ++ ET +PV  +  +R +F L                      K+   +  P   +   E  V RL +SLYGLKQSGR+W   LD+ L+  G+ +  ++PC+Y+ R +E ++   ++ VYVDDL+ I+   E + E K  + R+F MKDLG L+ +LGIEV+    + +  ++Q  YI+E+L  +   +C+ V TP+E     GK   P+S ++  E
Sbjct:   26 PKTFKQAMEGPESDLWKAAMEEELTSLEVMKVWEFTELPPGKT-----AIGSKWVFKIKYMADGTVERYKARLVAQGFTQKPGVDYEETYSPVISLPAIRLLFKLAVNNNWIIHQMDVKTAYLNGELKEEIYMKCPDGIT-GAEGKVCRLLRSLYGLKQSGRSWYEKLDEKLLEGGMNKCKSEPCIYYRRCNENVK---IILVYVDDLILISSSEECMVEMKEMLRRNFDMKDLGELNYILGIEVKKG--DHSLRLNQVKYIKEILSEFNMSDCKSVSTPMETNYNIGKQHCPKSDEERKE 315          
BLAST of mRNA_H-paniculata_contig28033.7663.1 vs. uniprot
Match: A0A034WM55_BACDO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Bactrocera dorsalis TaxID=27457 RepID=A0A034WM55_BACDO)

HSP 1 Score: 173 bits (438), Expect = 2.070e-45
Identity = 114/287 (39.72%), Postives = 161/287 (56.10%), Query Frame = 1
Query:   16 PKSAAEALKSPETEKWRAAMEEEWRTLVKNRTWE-SEDPGRSLMGRKAISTKWNFKRKLKEDGSVPRYKARLVAQDFSQVEGENFFETSAPVARMSTLR-----------TVFS-----------LKKSCLLSYPSRFSLSPETFVRRLHKSLYGLKQSGRNWNNILDDFLVGIGLQRSTTDPCLYFSRDEGIETDILVAVYVDDLVI-ARRRERVDEFKYNISRHFTMKDLGSLSRVLGIEVQCDLPNGTRTISQGGYIREVLKRYGFDECRGVPTPVEGKGKILA 804
            P +  EA+ S   + W++AM EE  +   N TWE S  P    MG+KAI +KW FKRK+  DG   RYKARLV + F+Q +  ++ ET APV R +++R           TV+            LK+   ++ PS F       V +L KSLYGLKQS R WN  L+  LV  GLQRS  D C+YF   +  +  + VAVYVDD+++ A   + +++ K  +S  F MKDLG+ S VLG+ +  +L  GT  I Q  YI +V++R+G +EC  V TP++   K+ A
Sbjct:  342 PNTVEEAMASEHHKLWQSAMIEEIESHDINGTWELSALP----MGKKAIPSKWVFKRKVNADGDPVRYKARLVVKGFNQKQHIDYDETFAPVVRYTSIRFLLALAVKYNLTVYQMDAVSAFLHGELKEEIYMTQPSGFD-DGSGRVCKLRKSLYGLKQSSRVWNIKLNSTLVSFGLQRSNVDQCVYFLVAD--KKMLFVAVYVDDVILFANDTKLLNKLKDKLSETFKMKDLGAASSVLGMRIAQNLKEGTLKIDQSAYIADVIRRFGMEECNPVGTPLDVNQKLSA 621          
BLAST of mRNA_H-paniculata_contig28033.7663.1 vs. uniprot
Match: A0A034VP70_BACDO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Bactrocera dorsalis TaxID=27457 RepID=A0A034VP70_BACDO)

HSP 1 Score: 173 bits (439), Expect = 2.250e-45
Identity = 112/297 (37.71%), Postives = 162/297 (54.55%), Query Frame = 1
Query:   16 PKSAAEALKSPETEKWRAAMEEEWRTLVKNRTWESEDPGRSLMGRKAISTKWNFKRKLKEDGSVPRYKARLVAQDFSQVEGENFFETSAPVARMSTLRTVFSLKKSCLLSYPSR---------------FSLSPETF------VRRLHKSLYGLKQSGRNWNNILDDFLVGIGLQRSTTDPCLYFSRDEGIETDILVAVYVDD-LVIARRRERVDEFKYNISRHFTMKDLGSLSRVLGIEVQCDLPNGTRTISQGGYIREVLKRYGFDECRGVPTPVEGKGKI---LAPESADKSPE 831
            P +  EAL SPE + W+ AM+EE  +   NRTW      +   G++AI+TKW FK K   +G++ RYKARLV +  SQ +G ++ ET +PV R ++LR +F++     LS                   F   PE +      V RL KSLYGLKQ+ + WN+ L++ L+ +GL RS  D C+YF   E   + + VA+YVDD LV +  ++     K  +S    MKD+GS S VLG+ VQ D       + Q  YI  VLKR+G D+C  V TP++   K+   + P+S ++  E
Sbjct:  752 PVNLEEALNSPEADDWKRAMKEEIESHKTNRTWVLT---KLPEGKRAINTKWVFKTKRNAEGALVRYKARLVVKGCSQKQGVDYSETFSPVVRYNSLRFLFAMAAKHDLSVHQLDAVTAFLNGELQEEVFMKQPEGYSDNSGRVCRLLKSLYGLKQASKVWNDKLNEVLISLGLIRSEVDQCIYFCVSE--YSMVYVAIYVDDVLVFSNDKKATQRIKNELSSKIKMKDMGSASSVLGMRVQRDEVKKLIKLDQSEYISSVLKRFGMDDCNAVATPLDLSQKLTLDMCPKSEEEKKE 1043          
BLAST of mRNA_H-paniculata_contig28033.7663.1 vs. uniprot
Match: A0A182GR37_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GR37_AEDAL)

HSP 1 Score: 166 bits (419), Expect = 3.120e-45
Identity = 103/268 (38.43%), Postives = 147/268 (54.85%), Query Frame = 1
Query:   61 WRAAMEEEWRTLVKNRTWESEDPGRSLMGRKAISTKWNFKRKLKEDGSVPRYKARLVAQDFSQVEGENFFETSAPVARMSTLRTVFSLK------------KSCLLS---YPSRFSLSPETF------VRRLHKSLYGLKQSGRNWNNILDDFLVGIGLQRSTTDPCLYFSRDEGIETDILVAVYVDDLVIARRRER-VDEFKYNISRHFTMKDLGSLSRVLGIEVQCDLPNGTRTISQGGYIREVLKRYGFDECRGVPTPVEGKGKI 798
            W+ AM+EE  +LV N  W      +   GR A++ KW FK K  ED   PRYKARLVA+ F+Q +G ++ +T +P+ARM TLRTV +L             K   L+       + L PE F      V RL +SLYGLKQ+ R+WN    +F+V +G  RS  D CLY  R  G +T +++ +YVDD++IA   E+ V   K  +S  F M D+G +   LG+ +  D    T  ISQ  Y+  +L R+   +CR + TP+E + K+
Sbjct:  110 WKQAMQEEMDSLVSNEKWTLV---KLPEGRNAVTCKWIFKLKHSEDNEAPRYKARLVARGFTQKQGFDYSDTYSPLARMDTLRTVLALANQRGWSVHQMDVKCAFLNGELTEEIYMLQPEGFEQRDGLVCRLKRSLYGLKQAARSWNERFHNFVVRLGFVRSRNDLCLY-RRGSG-DTQVILVIYVDDVLIASGSEKLVGTIKKCLSTEFEMTDVGEVRNFLGMRIDRDAEKKTLRISQRRYLENLLDRFQMRDCRPIATPMENRLKL 372          
BLAST of mRNA_H-paniculata_contig28033.7663.1 vs. uniprot
Match: A0A6S7HEL0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HEL0_PARCT)

HSP 1 Score: 173 bits (438), Expect = 3.160e-45
Identity = 103/288 (35.76%), Postives = 163/288 (56.60%), Query Frame = 1
Query:   16 PKSAAEALKSPETEKWRAAMEEEWRTLVKNRTWESEDPGRSLMGRKAISTKWNFKRKLKEDGSVPRYKARLVAQDFSQVEGENFFETSAPVARMSTLRTVFSL----------------------KKSCLLSYPSRFSLS-PETFVRRLHKSLYGLKQSGRNWNNILDDFLVGIGLQRSTTDPCLYFSRDEGIETDI-LVAVYVDDLVIARRR-ERVDEFKYNISRHFTMKDLGSLSRVLGIEVQCDLPNGTRTISQGGYIREVLKRYGFDECRGVPTPVEGKGKILA 804
            P + +EAL  P  E+W  AM++E  +L ++  WE  +  +    RKA+  KW FK K   DGS+ R+KARLVAQ FSQ  G ++ ET +PV R   +RTV +L                      +    +  P  F +   E  V +L+KSLYGLKQS R WN++LD+ L  IG  ++ +DPC+Y   ++G   DI +VA++VDD+++A +  E++ + K +I+  F +KD+G L  +LG++V  +  +    I Q  Y   ++K+YG + C+ V TPV+   K+++
Sbjct:  760 PTTVSEALCGPNAERWHEAMQQEMDSLQEHDVWELTELPKD---RKAVGCKWVFKVKHNADGSIERHKARLVAQGFSQRFGVDYDETFSPVVRFEKIRTVIALSVQRGLKLHQMDVTAAFLNGELEDEVYMKQPEGFEVKGKEHLVCKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDG---DIFVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVS 1039          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28033.7663.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2S2NPY8_SCHGA2.350e-4737.41Copia protein (Fragment) n=1 Tax=Schizaphis gramin... [more]
A0A8D9B1F5_9HEMI1.830e-4637.27Copia protein n=1 Tax=Cacopsylla melanoneura TaxID... [more]
A0A7D9JFU5_PARCT5.120e-4637.06Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0C9RAA9_9HYME8.260e-4637.71POLX_4 protein (Fragment) n=1 Tax=Fopius arisanus ... [more]
A0A7D9HZ03_PARCT9.950e-4634.84Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0A9WI29_LYGHE1.100e-4536.54Retrovirus-related Pol polyprotein from transposon... [more]
A0A034WM55_BACDO2.070e-4539.72Retrovirus-related Pol polyprotein from transposon... [more]
A0A034VP70_BACDO2.250e-4537.71Retrovirus-related Pol polyprotein from transposon... [more]
A0A182GR37_AEDAL3.120e-4538.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6S7HEL0_PARCT3.160e-4535.76Retrovirus-related Pol poly from transposon TNT 1-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28033contigH-paniculata_contig28033:726..1644 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score170.6
Seed ortholog evalue1e-39
Seed eggNOG ortholog6334.EFV57947
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons2
Model size831
Cds size831
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929850.6513863-CDS-H-paniculata_contig28033:725..10491622929850.6513863-CDS-H-paniculata_contig28033:725..1049Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28033 726..1049 +
1691481039.131903-CDS-H-paniculata_contig28033:725..10491691481039.131903-CDS-H-paniculata_contig28033:725..1049Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28033 726..1049 +
1622929850.6697874-CDS-H-paniculata_contig28033:1137..16441622929850.6697874-CDS-H-paniculata_contig28033:1137..1644Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28033 1138..1644 +
1691481039.144233-CDS-H-paniculata_contig28033:1137..16441691481039.144233-CDS-H-paniculata_contig28033:1137..1644Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28033 1138..1644 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28033.7663.1prot_H-paniculata_contig28033.7663.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28033 726..1644 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28033.7663.1

>prot_H-paniculata_contig28033.7663.1 ID=prot_H-paniculata_contig28033.7663.1|Name=mRNA_H-paniculata_contig28033.7663.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=277bp
VSDEKPKSAAEALKSPETEKWRAAMEEEWRTLVKNRTWESEDPGRSLMGR
KAISTKWNFKRKLKEDGSVPRYKARLVAQDFSQVEGENFFETSAPVARMS
TLRTVFSLKKSCLLSYPSRFSLSPETFVRRLHKSLYGLKQSGRNWNNILD
DFLVGIGLQRSTTDPCLYFSRDEGIETDILVAVYVDDLVIARRRERVDEF
KYNISRHFTMKDLGSLSRVLGIEVQCDLPNGTRTISQGGYIREVLKRYGF
DECRGVPTPVEGKGKILAPESADKSPE
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mRNA from alignment at H-paniculata_contig28033:726..1644+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28033.7663.1 ID=mRNA_H-paniculata_contig28033.7663.1|Name=mRNA_H-paniculata_contig28033.7663.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=919bp|location=Sequence derived from alignment at H-paniculata_contig28033:726..1644+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTATCTGATGAAAAGCCGAAATCTGCGGCAGAAGCATTGAAGAGCCCAGA GACAGAAAAATGGCGCGCGGCAATGGAGGAGGAATGGAGGACGTTGGTGA AAAATAGGACGTGGGAGAGCGAGGACCCGGGGAGGTCACTGATGGGGCGG AAGGCGATCTCTACCAAATGGAATTTCAAGCGCAAACTGAAGGAGGACGG CAGCGTGCCACGCTACAAAGCGCGACTGGTGGCTCAAGATTTTTCACAGG TGGAGGGTGAGAATTTCTTTGAAACCAGTGCCCCCGTAGCTCGCATGTCG ACATTGCGTACTGTTTTTAGCCTGGTCGCAGAACATGATTTCGAACTAAA AGGCATGGACGTAGATGCGGAAAGGCATGGACGTAGATGCGGCGTATTGA ACGCCCCCGTAGAAGAAGAGCTGTTTGTTAAGCTACCCCTCGAGGTTTTC CCTTTCTCCCGAGACTTTTGTGCGTCGCCTGCATAAAAGCCTGTATGGCC TCAAGCAGAGCGGCCGAAACTGGAATAACATTCTTGACGACTTTCTTGTT GGGATAGGACTCCAGCGTTCCACTACCGACCCATGCTTGTACTTCTCTCG CGACGAAGGGATAGAGACAGACATTCTCGTGGCCGTCTATGTTGACGACC TGGTCATCGCTCGACGTCGTGAGAGAGTAGACGAATTCAAGTACAACATA AGTCGGCATTTTACGATGAAAGACTTGGGCTCCCTCTCGCGCGTGTTGGG AATAGAAGTACAATGTGACCTCCCCAATGGTACCAGAACCATCTCGCAGG GTGGCTATATCCGCGAGGTACTCAAAAGATACGGTTTTGACGAATGTCGA GGCGTGCCCACCCCTGTAGAGGGAAAAGGGAAGATTTTGGCACCCGAGTC GGCCGACAAGTCCCCCGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig28033:726..1644+

>mRNA_H-paniculata_contig28033.7663.1 ID=mRNA_H-paniculata_contig28033.7663.1|Name=mRNA_H-paniculata_contig28033.7663.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1662bp|location=Sequence derived from alignment at H-paniculata_contig28033:726..1644+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTATCTGATGAAAAGCCGAAATCTGCGGCAGAAGCATTGAAGAGCCCAGA
GACAGAAAAATGGCGCGCGGCAATGGAGGAGGAATGGAGGACGTTGGTGA
AAAATAGGACGTGGGAGAGCGAGGACCCGGGGAGGTCACTGATGGGGCGG
AAGGCGATCTCTACCAAATGGAATTTCAAGCGCAAACTGAAGGAGGACGG
CAGCGTGCCACGCTACAAAGCGCGACTGGTGGCTCAAGATTTTTCACAGG
TGGAGGGTGAGAATTTCTTTGAAACCAGTGCCCCCGTAGCTCGCATGTCG
ACATTGCGTACTGTTTTTAGCCTGGTATCTGATGAAAAGCCGAAATCTGC
GGCAGAAGCATTGAAGAGCCCAGAGACAGAAAAATGGCGCGCGGCAATGG
AGGAGGAATGGAGGACGTTGGTGAAAAATAGGACGTGGGAGAGCGAGGAC
CCGGGGAGGTCACTGATGGGGCGGAAGGCGATCTCTACCAAATGGAATTT
CAAGCGCAAACTGAAGGAGGACGGCAGCGTGCCACGCTACAAAGCGCGAC
TGGTGGCTCAAGATTTTTCACAGGTGGAGGGTGAGAATTTCTTTGAAACC
AGTGCCCCCGTAGCTCGCATGTCGACATTGCGTACTGTTTTTAGCCTGAA
GAAGAGCTGTTTGTTAAGCTACCCCTCGAGGTTTTCCCTTTCTCCCGAGA
CTTTTGTGCGTCGCCTGCATAAAAGCCTGTATGGCCTCAAGCAGAGCGGC
CGAAACTGGAATAACATTCTTGACGACTTTCTTGTTGGGATAGGACTCCA
GCGTTCCACTACCGACCCATGCTTGTACTTCTCTCGCGACGAAGGGATAG
AGACAGACATTCTCGTGGCCGTCTATGTTGACGACCTGGTCATCGCTCGA
CGTCGTGAGAGAGTAGACGAATTCAAGTACAACATAAGTCGGCATTTTAC
GATGAAAGACTTGGGCTCCCTCTCGCGCGTGTTGGGAATAGAAGTACAAT
GTGACCTCCCCAATGGTACCAGAACCATCTCGCAGGGTGGCTATATCCGC
GAGGTACTCAAAAGATACGGTTTTGACGAATGTCGAGGCGTGCCCACCCC
TGTAGAGGGAAAAGGGAAGATTTTGGCACCCGAGTCGGCCGACAAGTCCC
CCGAAAAGAAGAGCTGTTTGTTAAGCTACCCCTCGAGGTTTTCCCTTTCT
CCCGAGACTTTTGTGCGTCGCCTGCATAAAAGCCTGTATGGCCTCAAGCA
GAGCGGCCGAAACTGGAATAACATTCTTGACGACTTTCTTGTTGGGATAG
GACTCCAGCGTTCCACTACCGACCCATGCTTGTACTTCTCTCGCGACGAA
GGGATAGAGACAGACATTCTCGTGGCCGTCTATGTTGACGACCTGGTCAT
CGCTCGACGTCGTGAGAGAGTAGACGAATTCAAGTACAACATAAGTCGGC
ATTTTACGATGAAAGACTTGGGCTCCCTCTCGCGCGTGTTGGGAATAGAA
GTACAATGTGACCTCCCCAATGGTACCAGAACCATCTCGCAGGGTGGCTA
TATCCGCGAGGTACTCAAAAGATACGGTTTTGACGAATGTCGAGGCGTGC
CCACCCCTGTAGAGGGAAAAGGGAAGATTTTGGCACCCGAGTCGGCCGAC
AAGTCCCCCGAA
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