mRNA_H-paniculata_contig2802.7660.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2802.7660.1
Unique NamemRNA_H-paniculata_contig2802.7660.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2802.7660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2802contigH-paniculata_contig2802:2074..2659 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size485
Cds size309
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2802.7660.1prot_H-paniculata_contig2802.7660.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2802 2249..2659 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929850.2207544-UTR-H-paniculata_contig2802:2073..22481622929850.2207544-UTR-H-paniculata_contig2802:2073..2248Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2802 2074..2248 +
1691481038.979303-UTR-H-paniculata_contig2802:2073..22481691481038.979303-UTR-H-paniculata_contig2802:2073..2248Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2802 2074..2248 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929850.255674-CDS-H-paniculata_contig2802:2248..23291622929850.255674-CDS-H-paniculata_contig2802:2248..2329Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2802 2249..2329 +
1691481038.9943664-CDS-H-paniculata_contig2802:2248..23291691481038.9943664-CDS-H-paniculata_contig2802:2248..2329Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2802 2249..2329 +
1622929850.288859-CDS-H-paniculata_contig2802:2431..26591622929850.288859-CDS-H-paniculata_contig2802:2431..2659Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2802 2432..2659 +
1691481039.0091066-CDS-H-paniculata_contig2802:2431..26591691481039.0091066-CDS-H-paniculata_contig2802:2431..2659Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2802 2432..2659 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2802.7660.1

>prot_H-paniculata_contig2802.7660.1 ID=prot_H-paniculata_contig2802.7660.1|Name=mRNA_H-paniculata_contig2802.7660.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
MRGKPANPNCTDTNCPHLQRVTRPLAPRLCGGDSRVVVSTWWIKVAATLA
RTALLDSVASLRWLHRATVTCERSNNPSMVNVRVLGEVDHCVLLSQLCRT
LAV
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mRNA from alignment at H-paniculata_contig2802:2074..2659+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2802.7660.1 ID=mRNA_H-paniculata_contig2802.7660.1|Name=mRNA_H-paniculata_contig2802.7660.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=586bp|location=Sequence derived from alignment at H-paniculata_contig2802:2074..2659+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACAGGCAATCAAACACCGATGTCTTCTTTTAATGACCCCAGTTCCGAC
GACAAGTCTCTGGTGTCGGAGTCGCCACATCCGGACGGTGCATCCCCAAT
GACTACGAACATGTCCCATGCCAATCAGAGGGGACTTGCAAAGCCCGGGC
TCCTTTGGCCGGATCCCAACACGTCATGAGGGGGAAGCCTGCCAACCCTA
ACTGCACAGACACTAACTGCCCCCATCTTCAACGCGTTACTCGCCCTCTT
GCGCCCGTCCATCACACGCTTCGTCGGTAAATCAGATCTTCTGGCGCCCT
CATCTTTTCTTAAGTCATTTGCCTCCTCTTTGGTTGTTGCTTCACCATCA
TACACAAGCGACTCTGTGGTGGTGACAGTCGTGTCGTTGTTAGTACCTGG
TGGATAAAGGTAGCAGCGACCCTTGCACGCACAGCTCTTTTGGACTCGGT
GGCTTCATTGCGCTGGCTTCATCGGGCTACAGTTACATGTGAGCGTTCTA
ATAATCCCAGCATGGTCAACGTAAGAGTGCTGGGAGAGGTTGACCACTGT
GTTCTTTTGTCTCAGCTCTGCCGCACGCTCGCCGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig2802:2074..2659+

>mRNA_H-paniculata_contig2802.7660.1 ID=mRNA_H-paniculata_contig2802.7660.1|Name=mRNA_H-paniculata_contig2802.7660.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig2802:2074..2659+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGGGGAAGCCTGCCAACCCTAACTGCACAGACACTAACTGCCCCCA
TCTTCAACGCGTTACTCGCCCTCTTGCGCCCATGAGGGGGAAGCCTGCCA
ACCCTAACTGCACAGACACTAACTGCCCCCATCTTCAACGCGTTACTCGC
CCTCTTGCGCCCCGACTCTGTGGTGGTGACAGTCGTGTCGTTGTTAGTAC
CTGGTGGATAAAGGTAGCAGCGACCCTTGCACGCACAGCTCTTTTGGACT
CGGTGGCTTCATTGCGCTGGCTTCATCGGGCTACAGTTACATGTGAGCGT
TCTAATAATCCCAGCATGGTCAACGTAAGAGTGCTGGGAGAGGTTGACCA
CTGTGTTCTTTTGTCTCAGCTCTGCCGCACGCTCGCCGTCCGACTCTGTG
GTGGTGACAGTCGTGTCGTTGTTAGTACCTGGTGGATAAAGGTAGCAGCG
ACCCTTGCACGCACAGCTCTTTTGGACTCGGTGGCTTCATTGCGCTGGCT
TCATCGGGCTACAGTTACATGTGAGCGTTCTAATAATCCCAGCATGGTCA
ACGTAAGAGTGCTGGGAGAGGTTGACCACTGTGTTCTTTTGTCTCAGCTC
TGCCGCACGCTCGCCGTC
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